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cjeans's library [832 articles]

Recent papers added to cjeans's library.
  • Darwinian Evolution on a Chip
    PLoS Biology, Vol. 6, No. 4. (1 April 2008), e85.
    by Brian M Paegel, Gerald F Joyce
    posted to experiment evolution by cjeans on 2008-05-06 01:52:55 as ** along with 1 person mpickett
  • Biologists initiate plan to map human proteome : Nature News
    posted to proteome by cjeans on 2008-05-06 01:34:59 as ** along with 1 person renatomilani
  • Gene transcription: Two worlds merged
    Nature, Vol. 452, No. 7190. (23 April 2008), pp. 946-947.
    by David M Lonard, Bert W O'Malley
    posted to transcription by cjeans on 2008-05-06 01:29:30 as **
  • Getting Started in Text Mining
    PLoS Computational Biology, Vol. 4, No. 1. (1 January 2008), e20.
    by Bretonnel K Cohen, Lawrence Hunter
    posted to text-mining by cjeans on 2008-04-01 09:17:28 as ** along with 10 people and 1 group ulmer jyuh y4su0 yas dullhunk hpiwowar sebastien_vigneau shigepong wchapman sci91078 dbmi-nlp
  • Mining literature for protein-protein interactions
    Bioinformatics, Vol. 17, No. 4. (1 April 2001), pp. 359-363.
    by Edward M Marcotte, Ioannis Xenarios, David Eisenberg
    posted to text-mining by cjeans on 2008-03-19 02:53:56 as ** along with 1 person blackbart
  • BioMed Central | Full text | PreBIND and Textomy – mining the biomedical literature for protein-protein interactions using a support vector machine
    posted to text-mining by cjeans on 2008-03-19 02:52:30 as **
  • Text-mining and information-retrieval services for molecular biology.
    Genome Biol, Vol. 6, No. 7. (2005)
    by M Krallinger, A Valencia
    posted to text-mining by cjeans on 2008-03-18 09:05:45 as ** along with 8 people and 6 groups spinaltap526 irenas Enro carlblesius textoris yas caporaso shimah78us dbk-lab Blog_and_Wiki_Research mgh-lcs hst-bmi T_lab biomedical-nlp
  • Reassessing a sparse energetic network within a single protein domain
    Proceedings of the National Academy of Sciences (13 March 2008), 0711732105.
    by Celestine N Chi, Lisa Elfstrom, Yao Shi, Tord Snall, Ake Engstrom, Per Jemth
    posted to coevolution correlated-mutation domain sca by cjeans on 2008-03-15 01:26:36 as ** along with 4 people and 1 group sobolevnrm apaydin cactus sunhwan baker-group
  • Using substitution probabilities to improve position-specific scoring matrices
    Comput. Appl. Biosci., Vol. 12, No. 2. (1 April 1996), pp. 135-143.
    by Jorja G Henikoff, Steven Henikoff
    posted to pssm by cjeans on 2008-03-15 01:22:39 as **
  • Evaluation of methods for the prediction of membrane spanning regions.
    Bioinformatics, Vol. 17, No. 7. (July 2001), pp. 646-653.
    by S Möller, MD Croning, R Apweiler
    posted to sequence by cjeans on 2008-03-03 08:13:44 as ** along with 2 people happy_manatee xingxu
  • Domains, Motifs, and Scaffolds: The Role of Modular Interactions in the Evolution and Wiring of Cell Signaling Circuits.
    Annu Rev Biochem (17 March 2006)
    by Roby P P Bhattacharyya, Attila Reményi, Brian J J Yeh, Wendell A A Lim
    posted to domain signaling by cjeans on 2008-01-29 02:46:16 as ** along with 6 people rklancer matzke imouthesmp choonpeng koller melting
  • Specificity in signal transduction: from phosphotyrosine-SH2 domain interactions to complex cellular systems.
    Cell, Vol. 116, No. 2. (23 January 2004), pp. 191-203.
    by T Pawson
    posted to domain sh2 signaling by cjeans on 2008-01-29 02:44:20 as **
  • Oncogenic re-wiring of cellular signaling pathways
    Oncogene, Vol. 26, No. 9. (0000), pp. 1268-1275.
    by T Pawson, N Warner
    posted to domain signaling by cjeans on 2008-01-29 02:43:24 as **
  • The Frequency Dependence of Osmo-Adaptation in Saccharomyces cerevisiae
    Science, Vol. 319, No. 5862. (25 January 2008), pp. 482-484.
    by Jerome T Mettetal, Dale Muzzey, Carlos Gomez-Uribe, Alexander van Oudenaarden
    posted to bio-math modelling system-biology by cjeans on 2008-01-25 07:19:25 as ** along with 4 people bayesian margaritis cactus biomcgary
  • Alignment Uncertainty and Genomic Analysis
    Science, Vol. 319, No. 5862. (25 January 2008), pp. 473-476.
    by Karen M Wong, Marc A Suchard, John P Huelsenbeck
    posted to regulation transcription by cjeans on 2008-01-25 07:09:15 as ** along with 19 people and 2 groups adacier jyuh bpb aprasad dayjm dpollard tny djkt zwang lisa1 cactus biomcgary lilou kinestetika dandaman gjuggler renatomilani mclarenv youdon EisenLab microbiology_nijmegen
  • Concurrent Fast and Slow Cycling of a Transcriptional Activator at an Endogenous Promoter
    Science, Vol. 319, No. 5862. (25 January 2008), pp. 466-469.
    by Tatiana S Karpova, Min J Kim, Corentin Spriet, Kip Nalley, Timothy J Stasevich, Zoulika Kherrouche, Laurent Heliot, James G Mcnally
    posted to regulation transcription by cjeans on 2008-01-25 07:04:00 as ** along with 3 people djkt margaritis caseybrown
  • GENOMICS: Lining Up to Avoid Bias
    Science, Vol. 319, No. 5862. (25 January 2008), pp. 416-417.
    by Antonis Rokas
    posted to sequence by cjeans on 2008-01-25 06:54:26 as ** along with 5 people operon dayjm lilou dandaman renatomilani
  • SYSTEMS BIOLOGY: Enlightening Rhythms
    Science, Vol. 319, No. 5862. (25 January 2008), pp. 417-418.
    by Ovidiu Lipan
    posted to expression microarray system-biology by cjeans on 2008-01-25 06:54:15 as ** along with 2 people dullhunk yuhc
  • Maps of random walks on complex networks reveal community structure
    Proceedings of the National Academy of Sciences (23 January 2008), 0706851105.
    by Martin Rosvall, Carl T Bergstrom
    posted to algorithm applied-math network by cjeans on 2008-01-24 08:30:49 as ** along with 7 people lfriedl cactus hannu roys maralena Diego_Prada lmichan
  • The evolution of gene collectives: How natural selection drives chemical innovation
    Proceedings of the National Academy of Sciences (23 January 2008), 0709132105.
    by Michael A Fischbach, Christopher T Walsh, Jon Clardy
    posted to evolution by cjeans on 2008-01-24 08:27:21 as ** along with 3 people stevanspringer operon tomhebbron
  • Preferential protection of protein interaction network hubs in yeast: Evolved functionality of genetic redundancy
    Proceedings of the National Academy of Sciences (23 January 2008), 0711043105.
    by Ran Kafri, Orna Dahan, Jonathan Levy, Yitzhak Pilpel
    posted to evolution network pin by cjeans on 2008-01-24 08:26:19 as ** along with 4 people and 1 group zwang janek04 wsjames mclarenv Oxford Virology
  • Signal processing by its coil zipper domain activates IKKgamma
    Proceedings of the National Academy of Sciences (23 January 2008), 0706552105.
    by Stuart Bloor, Grigory Ryzhakov, Sebastian Wagner, Butler, David L Smith, Rebekka Krumbach, Ivan Dikic, Felix Randow
    posted to coiled-coil by cjeans on 2008-01-24 06:52:48 as **
  • The Eps15 homology (EH) domain
    FEBS Letters, Vol. 513, No. 1. (20 February 2002), pp. 24-29.
    by Stefano Confalonieri, Pier P Di Fiore
    posted to sample-domain by cjeans on 2008-01-24 01:42:46 as **
  • The ENTH domain
    FEBS Letters, Vol. 513, No. 1. (20 February 2002), pp. 11-18.
    by Pietro De Camilli, Hong Chen, Joel Hyman, Ezequiel Panepucci, Alex Bateman, Axel T Brunger
    posted to sample-domain by cjeans on 2008-01-23 09:48:47 as **
  • Reading protein modifications with interaction domains
    Nature Reviews Molecular Cell Biology, Vol. 7, No. 7., pp. 473-483.
    by Bruce T Seet, Ivan Dikic, Ming-Ming Zhou, Tony Pawson
    posted to domain modification post-translation by cjeans on 2008-01-23 08:13:26 as ** along with 3 people laurabailey choonpeng mingzhi
  • Critical nodes in signalling pathways: insights into insulin action
    Nat Rev Mol Cell Biol, Vol. 7, No. 2. (February 2006), pp. 85-96.
    by Cullen M Taniguchi, Brice Emanuelli, Ronald C Kahn
    posted to network signaling by cjeans on 2008-01-23 08:06:12 as ** along with 3 people and 2 groups tmmurali okarsligil julius Bioinformatics SysbioMPI-TCells
  • p53 in health and disease
    Nature Reviews Molecular Cell Biology, Vol. 8, No. 4., pp. 275-283.
    by Karen H Vousden, David P Lane
    posted to disease by cjeans on 2008-01-23 08:04:14 as ** along with 3 people and 1 group lyndallsarkies jyuh xico WetBiology
  • Dynamic control of signaling by modular adaptor proteins
    Current Opinion in Cell Biology, Vol. In Press, Corrected Proof
    by Tony Pawson
    posted to domain by cjeans on 2008-01-23 07:54:48 as ** along with 2 people choonpeng heb
  • Effects of Molecular Memory and Bursting on Fluctuations in Gene Expression
    Science, Vol. 319, No. 5861. (18 January 2008), pp. 339-343.
    by Juan M Pedraza, Johan Paulsson
    posted to applied-math bio-math expression by cjeans on 2008-01-23 06:57:06 as ** along with 7 people ddcttrl balicea margaritis heliopais roys sb_journal_club rschulz
  • Designed Protein-Protein Association
    Science, Vol. 319, No. 5860. (11 January 2008), pp. 206-209.
    by Dirk Grueninger, Nora Treiber, Mathias O Ziegler, Jochen W Koetter, Monika-Sarah Schulze, Georg E Schulz
    posted to design interface ppi by cjeans on 2008-01-23 06:48:23 as ** along with 4 people and 1 group zwang cactus biomcgary sobolevnrm baker-group
  • Pathways of clathrin-independent endocytosis
    Nature Reviews Molecular Cell Biology, Vol. 8, No. 8., pp. 603-612.
    by Satyajit Mayor, Richard E Pagano
    posted to endocytosis membrane-traffic by cjeans on 2008-01-23 06:27:29 as ** along with 1 person lechristophe
  • Cancer and ageing: convergent and divergent mechanisms
    Nature Reviews Molecular Cell Biology, Vol. 8, No. 9., pp. 715-722.
    by Manuel Serrano, Maria A Blasco
    posted to cancer disease by cjeans on 2008-01-23 06:25:17 as ** along with 4 people and 1 group jyuh sebastien_vigneau loopback007 tdmckee Cancer_Stem_Cells
  • Self-eating and self-killing: crosstalk between autophagy and apoptosis
    Nature Reviews Molecular Cell Biology, Vol. 8, No. 9., pp. 741-752.
    by Chiara M Maiuri, Einat Zalckvar, Adi Kimchi, Guido Kroemer
    posted to autophagy by cjeans on 2008-01-23 06:25:02 as **
  • Concepts in sumoylation: a decade on
    Nat Rev Mol Cell Biol, Vol. 8, No. 12. (December 2007), pp. 947-956.
    by Ruth Geiss-Friedlander, Frauke Melchior
    posted to post-translation modification by cjeans on 2008-01-23 06:21:37 as ** along with 2 people jyuh Ema
  • Palmitoylation: policing protein stability and traffic
    Nature Reviews Molecular Cell Biology, Vol. 8, No. 1., pp. 74-84.
    by Maurine E Linder, Robert J Deschenes
    posted to modification post-translation ubiquitin by cjeans on 2008-01-23 03:27:58 as ** along with 1 person jyuh
  • SUMO and ubiquitin in the nucleus: different functions, similar mechanisms?
    Genes Dev., Vol. 18, No. 17. (1 September 2004), pp. 2046-2059.
    by Grace Gill
    posted to modification post-translation ubiquitin by cjeans on 2008-01-23 03:03:51 as ** along with 2 people and 1 group imouthesmp oannes Regulomics_UCHSC
  • Modification of Proteins by Ubiquitin and Ubiquitin-Like Proteins - Annual Review of Cell and Developmental Biology, 22(1):159 - Full Text
    posted to modification post-translation ubiquitin by cjeans on 2008-01-23 02:28:09 as **
  • Ubiquitin-binding domains
    Nature Reviews Molecular Cell Biology, Vol. 6, No. 8. (01 August 2005), pp. 610-621.
    by Linda Hicke, Heidi L Schubert, Christopher P Hill
    posted to domain modification post-translation ubiquitin by cjeans on 2008-01-23 01:55:14 as ** along with 1 person laurabailey
  • Ubiquitin and ubiquitin-like proteins as multifunctional signals
    Nature Reviews Molecular Cell Biology, Vol. 6, No. 8. (01 August 2005), pp. 599-609.
    by Rebecca L Welchman, Colin Gordon, John R Mayer
    posted to modification post-translation ubiquitin by cjeans on 2008-01-23 01:53:24 as ** along with 1 person laurabailey
  • A superfamily of protein tags: ubiquitin, SUMO and related modifiers
    Trends in Biochemical Sciences, Vol. 28, No. 6. (June 2003), pp. 321-328.
    by David C Schwartz, Mark Hochstrasser
    posted to modification post-translation sumo ubiquitin by cjeans on 2008-01-23 01:51:32 as **
  • Back to the Future with Ubiquitin
    Cell, Vol. 116, No. 2. (23 January 2004), pp. 181-190.
    by Cecile M Pickart
    posted to modification post-translation ubiquitin by cjeans on 2008-01-23 01:50:41 as **
  • Targeting Rab GTPases to distinct membrane compartments.
    Nat Rev Mol Cell Biol, Vol. 5, No. 11. (November 2004), pp. 886-896.
    by S Pfeffer, D Aivazian
    posted to membrane-traffic by cjeans on 2008-01-22 10:05:41 as ** along with 2 people pgastrein rebeccahainess
  • Positive selection acting on splicing motifs reflects compensatory evolution
    Genome Res. (18 January 2008), gr.070268.107.
    by Shengdong Ke, Xiang H Zhang, Lawrence A Chasin
    posted to coevolution evolution by cjeans on 2008-01-22 00:43:06 as ** along with 3 people and 1 group operon stajich gjuggler Berkeley Mycology
  • Intracellular pattern recognition receptors in the host response
    Nature, Vol. 442, No. 7098., pp. 39-44.
    by Etienne Meylan, Jã¼rg Tschopp, Michael Karin
    posted to pathogen by cjeans on 2008-01-21 12:47:31 as ** along with 1 person and 1 group kengg Plantandetc
  • Autophagosome formation: core machinery and adaptations
    Nat Cell Biol, Vol. 9, No. 10. (October 2007), pp. 1102-1109.
    by Zhiping Xie, Daniel J Klionsky
    posted to autophagy by cjeans on 2008-01-19 01:56:43 as ** along with 1 person paulschlesinger
  • Autophagy: from phenomenology to molecular understanding in less than a decade
    Nature Reviews Molecular Cell Biology, Vol. 8, No. 11., pp. 931-937.
    by Daniel J Klionsky
    posted to autophagy by cjeans on 2008-01-19 01:56:29 as **
  • The logic of indirect speech
    Proceedings of the National Academy of Sciences (16 January 2008), 0707192105.
    by Steven Pinker, Martin A Nowak, James J Lee
    posted to applied-math by cjeans on 2008-01-17 09:51:29 as ** along with 2 people briordan niallhaslam
  • Micromechanical properties of keratin intermediate filament networks
    Proceedings of the National Academy of Sciences (16 January 2008), 0710728105.
    by Sivaraj Sivaramakrishnan, James V Degiulio, Laszlo Lorand, Robert D Goldman, Karen M Ridge
    posted to experiment network ppi by cjeans on 2008-01-17 09:48:40 as **
  • The evolutionary dynamics of the Saccharomyces cerevisiae protein interaction network after duplication
    Proceedings of the National Academy of Sciences (16 January 2008), 0707293105.
    by Aviva Presser, Michael B Elowitz, Manolis Kellis, Roy Kishony
    posted to duplication evolution module network pin ppi by cjeans on 2008-01-17 08:39:26 as ** along with 3 people zwang roys phoenixzxl
  • High-confidence prediction of global interactomes based on genome-wide coevolutionary networks
    Proceedings of the National Academy of Sciences (16 January 2008), 0709671105.
    by David Juan, Florencio Pazos, Alfonso Valencia
    posted to coevolution evolution mirrortree pin ppi profile by cjeans on 2008-01-17 08:07:50 as ** along with 11 people and 1 group tmmurali brant balicea sebastien_vigneau bluto aconesa Katje roys friendpine huali mdstobbe microbiology_nijmegen
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