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cjeans's Zhang [21 articles]

Recent papers posted to cjeans's library by the author Zhang. You can also see everyone's Zhang.
  • Positive selection acting on splicing motifs reflects compensatory evolution
    Genome Res. (18 January 2008), gr.070268.107.
    by Shengdong Ke, Xiang H Zhang, Lawrence A Chasin
    posted to coevolution evolution by cjeans on 2008-01-22 00:43:06 as ** along with 4 people and 1 group bpcusack operon stajich gjuggler Berkeley Mycology
  • A simple method for estimating the parameter of substitution rate variation among sites
    Mol Biol Evol, Vol. 14, No. 11. (1 November 1997), pp. 1106-1113.
    by X Gu, J Zhang
    posted to evolution substitution by cjeans on 2007-12-26 04:15:27 as **
  • A map of human cancer signaling
    Mol Syst Biol, Vol. 3 (18 December 2007)
    by Qinghua Cui, Yun Ma, Maria Jaramillo, Hamza Bari, Arif Awan, Song Yang, Simo Zhang, Lixue Liu, Meng Lu, Maureen O'Connor-Mccourt, Enrico O Purisima, Edwin Wang
    posted to cancer disease integrative network system-biology by cjeans on 2007-12-20 00:43:28 as ** along with 6 people frohike srp33 tmmurali ealloza Ema renatomilani
  • A modular network model of aging
    Mol Syst Biol, Vol. 3 (4 December 2007)
    by Huiling Xue, Bo Xian, Dong Dong, Kai Xia, Shanshan Zhu, Zhongnan Zhang, Lei Hou, Qingpeng Zhang, Yi Zhang, Jing-Dong J Han
    posted to integrative network by cjeans on 2007-12-18 05:57:42 as ** along with 8 people tmmurali muraken grahamc zwang biehl mingzhi renatomilani dap5087
  • Divergence of Transcription Factor Binding Sites Across Related Yeast Species
    Science, Vol. 317, No. 5839. (10 August 2007), pp. 815-819.
    by Anthony R Borneman, Tara A Gianoulis, Zhengdong D Zhang, Haiyuan Yu, Joel Rozowsky, Michael R Seringhaus, Lu Y Wang, Mark Gerstein, Michael Snyder
    posted to compare-genomics regulation tfbs by cjeans on 2007-12-12 13:29:42 as ** along with 16 people and 2 groups anka nklee aalibes chad_davis dpollard djkt mikaelhuss lusk sujaikumar zwang GustavoLacerda Jporci maximilianh cisevol njcitulike emptyhb EisenLab cis-regulatory-evolution
  • Integrated analysis of experimental data sets reveals many novel promoters in 1% of the human genome
    Genome Res., Vol. 17, No. 6. (1 June 2007), pp. 720-731.
    by Nathan D Trinklein, Ulas Karaoz, Jiaqian Wu, Anason Halees, Force, Patrick J Collins, Deyou Zheng, Zhengdong D Zhang, Mark B Gerstein, Michael Snyder, Richard M Myers, Zhiping Weng
    posted to regulation system-biology by cjeans on 2007-12-12 02:56:57 as ** along with 5 people jasonflannick jyuh djkt olympos Garamonfok
  • Global landscape of protein complexes in the yeast Saccharomyces cerevisiae
    Nature (22 March 2006)
    by Nevan J Krogan, Gerard Cagney, Haiyuan Yu, Gouqing Zhong, Xinghua Guo, Alexandr Ignatchenko, Joyce Li, Shuye Pu, Nira Datta, Aaron P Tikuisis, Thanuja Punna, Josã© M Peregrã­n-Alvarez, Michael Shales, Xin Zhang, Michael Davey, Mark D Robinson, Alberto Paccanaro, James E Bray, Anthony Sheung, Bryan Beattie, Dawn P Richards, Veronica Canadien, Atanas Lalev, Frank Mena, Peter Wong, Andrei Starostine, Myra M Canete, James Vlasblom, Samuel Wu, Chris Orsi, Sean R Collins, Shamanta Chandran, Robin Haw, Jennifer J Rilstone, Kiran Gandi, Natalie J Thompson, Gabe Musso, Peter St Onge, Shaun Ghanny, Mandy HY Lam, Gareth Butland, Amin M Altaf-Ul, Shigehiko Kanaya, Ali Shilatifard, Erin O'Shea, Jonathan S Weissman, James C Ingles, Timothy R Hughes, John Parkinson, Mark Gerstein, Shoshana J Wodak, Andrew Emili, Jack F Greenblatt
    posted to network pin ppi by cjeans on 2007-12-11 01:24:23 as ** along with 21 people and 4 groups ethkim mapplab chasmand hplatero frohike carlk Borelli lfriedl chad_davis balajis marcius tardigrade nirfriedman balabu j3xucite nickluscombe koller raiyar nicoleq Evangelia csaveanu kdl EBI-regulation BioinfoCIPF SGU-CIPF
  • Topological structure analysis of the protein-protein interaction network in budding yeast
    Nucl. Acids Res., Vol. 31, No. 9. (1 May 2003), pp. 2443-2450.
    by Dongbo Bu, Yi Zhao, Lun Cai, Hong Xue, Xiaopeng Zhu, Hongchao Lu, Jingfen Zhang, Shiwei Sun, Lunjiang Ling, Nan Zhang, Guojie Li, Runsheng Chen
    posted to network ppi topology by cjeans on 2007-11-30 06:52:35 as ** along with 5 people and 1 group ellakat carlk lfriedl iris_2001 minostro kdl
  • A forest-based approach to identifying gene and gene gene interactions
    Proceedings of the National Academy of Sciences (28 November 2007), 0709868104.
    by Xiang Chen, Ching-Ti Liu, Meizhuo Zhang, Heping Zhang
    posted to algorithm forest by cjeans on 2007-11-29 08:31:37 as ** along with 5 people jyuh balicea zwang xingxu hpaces
  • The molecular architecture of the nuclear pore complex
    Nature, Vol. 450, No. 7170. (29 November 2007), pp. 695-701.
    by Frank Alber, Svetlana Dokudovskaya, Liesbeth M Veenhoff, Wenzhu Zhang, Julia Kipper, Damien Devos, Adisetyantari Suprapto, Orit Karni-Schmidt, Rosemary Williams, Brian T Chait, Andrej Sali, Michael P Rout
    posted to simulation structure by cjeans on 2007-11-29 06:20:43 as ** along with 6 people chad_davis neils zwang mkikkawa faion phoenixzxl
  • Determining the architectures of macromolecular assemblies
    Nature, Vol. 450, No. 7170., pp. 683-694.
    by Frank Alber, Svetlana Dokudovskaya, Liesbeth M Veenhoff, Wenzhu Zhang, Julia Kipper, Damien Devos, Adisetyantari Suprapto, Orit Karni-Schmidt, Rosemary Williams, Brian T Chait, Michael P Rout, Andrej Sali
    posted to simulation structure by cjeans on 2007-11-29 06:17:52 as ** along with 7 people higueruelo chad_davis neils zwang CameronNeylon faion phoenixzxl
  • Surprising complexity of the ancestral apoptosis network
    Genome Biology, Vol. 8 (24 October 2007), R226.
    by Christian M Zmasek, Qing Zhang, Yuzhen Ye, Adam Godzik
    posted to network by cjeans on 2007-11-10 02:46:10 as ** along with 1 person cmzmasek
  • CDD: a Conserved Domain Database for protein classification.
    Nucleic Acids Res, Vol. 33, No. Database issue. (1 January 2005)
    by A Marchler-Bauer, JB Anderson, PF Cherukuri, C DeWeese-Scott, LY Geer, M Gwadz, S He, DI Hurwitz, JD Jackson, Z Ke, CJ Lanczycki, CA Liebert, C Liu, F Lu, GH Marchler, M Mullokandov, BA Shoemaker, V Simonyan, JS Song, PA Thiessen, RA Yamashita, JJ Yin, D Zhang, SH Bryant
    posted to database domain by cjeans on 2007-11-08 08:26:11 as ** along with 2 people rabio balajis
  • Predicting protein-protein interactions based only on sequences information
    PNAS, Vol. 104, No. 11. (13 March 2007), pp. 4337-4341.
    by Juwen Shen, Jian Zhang, Xiaomin Luo, Weiliang Zhu, Kunqian Yu, Kaixian Chen, Yixue Li, Hualiang Jiang
    posted to ppi prediction by cjeans on 2007-10-11 10:00:29 as ** along with 5 people and 1 group phoenixzxl samjlord Dualsystems ruvido huyun110 moernerlab
  • Low Rates of Expression-Profile Divergence in Highly-Expressed Genes and Tissue-Specific Genes During Mammalian Evolution.
    Mol Biol Evol (6 March 2006)
    by Ben-Yang Y Liao, Jianzhi Zhang
    posted to evolution expression microarray by cjeans on 2007-06-30 11:02:40 as *** along with 5 people and 1 group dragonrez aprasad dpollard djkt emarker EisenLab
  • Evolutionary Conservation of Expression Profiles Between Human and Mouse Orthologous Genes
    Molecular Biology and Evolution, Vol. 23, No. 3. (March 2006), pp. 530-540.
    by Ben-Yang Liao, Jianzhi Zhang
    posted to evolution expression microarray by cjeans on 2007-06-30 11:01:18 as ***** along with 2 people and 1 group penka gjuggler Nie
  • Genome-wide atlas of gene expression in the adult mouse brain
    Nature
    by Ed S Lein, Michael J Hawrylycz, Nancy Ao, Mikael Ayres, Amy Bensinger, Amy Bernard, Andrew F Boe, Mark S Boguski, Kevin S Brockway, Emi J Byrnes, Lin Chen, Li Chen, Tsuey-Ming Chen, Mei C Chin, Jimmy Chong, Brian E Crook, Aneta Czaplinska, Chinh N Dang, Suvro Datta, Nick R Dee, Aimee L Desaki, Tsega Desta, Ellen Diep, Tim A Dolbeare, Matthew J Donelan, Hong-Wei Dong, Jennifer G Dougherty, Ben J Duncan, Amanda J Ebbert, Gregor Eichele, Lili K Estin, Casey Faber, Benjamin A Facer, Rick Fields, Shanna R Fischer, Tim P Fliss, Cliff Frensley, Sabrina N Gates, Katie J Glattfelder, Kevin R Halverson, Matthew R Hart, John G Hohmann, Maureen P Howell, Darren P Jeung, Rebecca A Johnson, Patrick T Karr, Reena Kawal, Jolene M Kidney, Rachel H Knapik, Chihchau L Kuan, James H Lake, Annabel R Laramee, Kirk D Larsen, Christopher Lau, Tracy A Lemon, Agnes J Liang, Ying Liu, Lon T Luong, Jesse Michaels, Judith J Morgan, Rebecca J Morgan, Marty T Mortrud, Nerick F Mosqueda, Lydia L Ng, Randy Ng, Geralyn J Orta, Caroline C Overly, Tu H Pak, Sheana E Parry, Sayan D Pathak, Owen C Pearson, Ralph B Puchalski, Zackery L Riley, Hannah R Rockett, Stephen A Rowland, Joshua J Royall, Marcos J Ruiz, Nadia R Sarno, Katherine Schaffnit, Nadiya V Shapovalova, Taz Sivisay, Clifford R Slaughterbeck, Simon C Smith, Kimberly A Smith, Bryan I Smith, Andy J Sodt, Nick N Stewart, Kenda-Ruth Stumpf, Susan M Sunkin, Madhavi Sutram, Angelene Tam, Carey D Teemer, Christina Thaller, Carol L Thompson, Lee R Varnam, Axel Visel, Ray M Whitlock, Paul E Wohnoutka, Crissa K Wolkey, Victoria Y Wong, Matthew Wood, Murat B Yaylaoglu, Rob C Young, Brian L Youngstrom, Xu F Yuan, Bin Zhang, Theresa A Zwingman, Allan R Jones
    posted to tissue-specific transcriptome by cjeans on 2007-06-30 10:18:08 as ** along with 13 people and 4 groups jonsta247 jeremymiller jfr dchughes adepace jclau mgaldzic nm JBEgwa01 N0131826 cmor rschulz dlmace EisenLab G4ID CHIP Genetics-of-Gambling
  • A gene atlas of the mouse and human protein-encoding transcriptomes.
    Proc Natl Acad Sci U S A, Vol. 101, No. 16. (20 April 2004), pp. 6062-6067.
    by AI Su, T Wiltshire, S Batalov, H Lapp, KA Ching, D Block, J Zhang, R Soden, M Hayakawa, G Kreiman, MP Cooke, JR Walker, JB Hogenesch
    posted to tissue-specific transcriptome by cjeans on 2007-06-30 04:08:50 as **** along with 11 people and 2 groups gjuggler dragonrez nickluscombe jeremymiller eukfn usagi-kirin asu shikin jdiezperezj caseybrown maralena EBI-regulation GeschwindLab
  • Accuracies of ancestral amino acid sequences inferred by the parsimony, likelihood, and distance methods.
    J Mol Evol, Vol. 44 Suppl 1 (1997)
    by J Zhang, M Nei
    posted to ancestral-sequence-reconstruction evolution by cjeans on 2007-06-26 10:34:36 as ****
  • A map of WW domain family interactions
    PROTEOMICS, Vol. 4, No. 3. (2004), pp. 643-655.
    by Hai Hu, John Columbus, Yi Zhang, Dongying Wu, Lubing Lian, Song Yang, Jennifer Goodwin, Christine Luczak, Mark Carter, Lin Chen, Michael James, Roger Davis, Marius Sudol, John Rodwell, Juan J Herrero
    posted to domain interaction ww by cjeans on 2007-06-12 00:52:45 as ****
  • In Search of the Biological Significance of Modular Structures in Protein Networks
    PLoS Computational Biology, Vol. 3, No. 6. (1 June 2007), e107.
    by Zhi Wang, Jianzhi Zhang
    posted to evolution network by cjeans on 2007-06-05 14:46:40 as ***** along with 6 people and 2 groups pinney jfr grahamc massivemayhem zwang cabbagezs Bioinformatics ParkinsonLab_at_MaRS
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