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	Darwinian Evolution on a Chip [My Copy] PLoS Biology, Vol. 6, No. 4. (1 April 2008), e85. by Brian M. Paegel, Gerald F. Joyce posted to evolution experiment by cjeans on 2008-05-06 01:52:55 as along with 2 people biomcgary gulkur
	The evolution of gene collectives: How natural selection drives chemical innovation [My Copy] Proceedings of the National Academy of Sciences (23 January 2008), 0709132105. by Michael A. Fischbach, Christopher T. Walsh, Jon Clardy posted to evolution by cjeans on 2008-01-24 08:27:21 as along with 3 people stevanspringer operon tomhebbron
	Preferential protection of protein interaction network hubs in yeast: evolved functionality of genetic redundancy. [My Copy] Proceedings of the National Academy of Sciences of the United States of America, Vol. 105, No. 4. (29 January 2008), pp. 1243-1248. by Ran Kafri, Orna Dahan, Jonathan Levy, Yitzhak Pilpel posted to evolution network pin by cjeans on 2008-01-24 08:26:19 as along with 5 people and 1 group saket zwang janek04 wsjames mclarenv Oxford Virology
	Positive selection acting on splicing motifs reflects compensatory evolution [My Copy] Genome Res. (18 January 2008), gr.070268.107. by Shengdong Ke, Xiang H. Zhang, Lawrence A. Chasin posted to coevolution evolution by cjeans on 2008-01-22 00:43:06 as along with 4 people and 1 group operon bpcusack stajich gjuggler Mycology
	The evolutionary dynamics of the Saccharomyces cerevisiae protein interaction network after duplication [My Copy] Proceedings of the National Academy of Sciences, Vol. 105, No. 3. (22 January 2008), pp. 950-954. by Aviva Presser, Michael B. Elowitz, Manolis Kellis, Roy Kishony posted to duplication evolution module network pin ppi by cjeans on 2008-01-17 08:39:26 as along with 10 people carlk ellarond saket leemond31 robfsouza loukialili pradiptaray zwang roys phoenixzxl
	High-confidence prediction of global interactomes based on genome-wide coevolutionary networks. [My Copy] Proceedings of the National Academy of Sciences of the United States of America, Vol. 105, No. 3. (22 January 2008), pp. 934-939. by David Juan, Florencio Pazos, Alfonso Valencia posted to coevolution evolution mirrortree pin ppi profile by cjeans on 2008-01-17 08:07:50 as along with 18 people and 1 group dfdong ptrobajo biomcgary qluo winterschlaefer marti tmmurali brant balicea sebastien_vigneau bluto aconesa Katje roys friendpine huali mdstobbe paolomarcatili microbiology_nijmegen
	Functional evolution of the p53 regulatory network through its target response elements. [My Copy] Proceedings of the National Academy of Sciences of the United States of America, Vol. 105, No. 3. (22 January 2008), pp. 944-949. by A. G. Jegga, A. Inga, D. Menendez, B. J. Aronow, M. A. Resnick posted to evolution network transcription by cjeans on 2008-01-14 05:28:50 as along with 7 people and 1 group danaiancu brant zwang cisevol idonaldson renatomilani guhjy cis-regulatory-evolution
	Evolution and Selection in Yeast Promoters: Analyzing the Combined Effect of Diverse Transcription Factor Binding Sites [My Copy] PLoS Computational Biology, Vol. 4, No. 1. (1 January 2008), e7. by Daniela Raijman, Ron Shamir, Amos Tanay posted to evolution tfbs transcription by cjeans on 2008-01-14 03:39:27 as
	Expression Profiles Reveal Parallel Evolution of Epistatic Interactions Involving the CRP regulon in Escherichia coli [My Copy] PLoS Genetics, Vol. preprint, No. 2008. (1 January 2008), e35.eor. by Tim F. Cooper, Susanna Remold, Rich E. Lenski, Dominique Schneider posted to evolution expression transcription by cjeans on 2008-01-14 03:17:17 as
	Mutation-Selection Models of Codon Substitution and Their Use to Estimate Selective Strengths on Codon Usage. [My Copy] Mol Biol Evol (3 January 2008) by Ziheng Yang, Rasmus Nielsen posted to algorithm evolution by cjeans on 2008-01-11 06:01:13 as along with 4 people and 1 group operon BioNica stajich gjuggler Mycology
	Phylogeny of endocytic components yields insight into the process of nonendosymbiotic organelle evolution [My Copy] Proceedings of the National Academy of Sciences (8 January 2008), 0707318105. by Joel B. Dacks, Pak P. Poon, Mark C. Field posted to evolution by cjeans on 2008-01-09 13:10:39 as along with 1 person renatomilani
	Protein dispensability and rate of evolution. [My Copy] Nature, Vol. 411, No. 6841. (28 June 2001), pp. 1046-1049. by A. E. Hirsh, H. B. Fraser posted to evolution fitness phenotype by cjeans on 2007-12-29 08:50:04 as along with 5 people and 1 group bjorns balicea penka bluto tfogal Nie
	A simple method for estimating the parameter of substitution rate variation among sites [My Copy] Mol Biol Evol, Vol. 14, No. 11. (1 November 1997), pp. 1106-1113. by X. Gu, J. Zhang posted to evolution substitution by cjeans on 2007-12-26 04:15:27 as
	Determining divergence times with a protein clock: Update and<img src="corehtml/pmc/pmcents/x2009.gif" border="0" alt=" " />reevaluation [My Copy] posted to evolution by cjeans on 2007-12-26 04:11:12 as
	Comparative analysis of the Saccharomyces cerevisiae and Caenorhabditis elegans protein interaction networks [My Copy] BMC Evolutionary Biology, Vol. 5, No. 1. (2005) by Ino Agrafioti, Jonathan Swire, James Abbott, Derek Huntley, Sarah Butcher, Michael Stumpf posted to compare-genomics evolution pin by cjeans on 2007-12-25 12:39:35 as along with 2 people and 1 group thegoose2 tharris C. elegans / WormBase
	A Single Determinant Dominates the Rate of Yeast Protein Evolution [My Copy] Mol Biol Evol, Vol. 23, No. 2. (1 February 2006), pp. 327-337. by D. Allan Drummond, Alpan Raval, Claus O. Wilke posted to evolution pin ppi by cjeans on 2007-12-25 12:34:18 as along with 2 people and 1 group daveGerrard robfsouza BergmanLab
	Integration of Horizontally Transferred Genes into Regulatory Interaction Networks Takes Many Million Years [My Copy] Mol Biol Evol (24 December 2007), msm283. by Martin J. Lercher, Csaba Pal posted to evolution network by cjeans on 2007-12-25 12:03:06 as along with 4 people and 1 group dquest marcio cambray cisevol cis-regulatory-evolution
	Deriving structure from evolution: metazoan segmentation [My Copy] Mol Syst Biol, Vol. 3 (18 December 2007) by Paul Francois, Vincent Hakim, Eric D. Siggia posted to evolution network system-biology by cjeans on 2007-12-20 00:41:22 as along with 3 people grahamc biomcgary Ema
	Double Dutch for duplications [My Copy] Nature Genetics, Vol. 39, No. 11., pp. 1303-1304. by Ewan Birney posted to duplication evolution genetics by cjeans on 2007-12-17 00:57:10 as along with 1 person jandot
	Evolutionary Analysis of Amino Acid Repeats Across the Genomes of 12 Drosophila Species [My Copy] Mol Biol Evol (7 December 2007), msm129. by Melanie A. Huntley, Andrew G. Clark posted to compare-genomics evolution by cjeans on 2007-12-16 04:42:40 as along with 1 person robfsouza
	Positive selection at the protein network periphery: Evaluation in terms of structural constraints and cellular context [My Copy] Proceedings of the National Academy of Sciences In Proceedings of the National Academy of Sciences, Vol. 104, No. 51. (18 December 2007), pp. 20274-20279. by Philip M. Kim, Jan O. Korbel, Mark B. Gerstein posted to evolution network by cjeans on 2007-12-14 00:28:33 as along with 12 people phoenixzxl lptolik daveGerrard Garamonfok diamantis renewang guhjy tmmurali grahamc mingzhi minostro wilbur
	Life-history traits drive the evolutionary rates of mammalian coding and noncoding genomic elements [My Copy] Proceedings of the National Academy of Sciences (11 December 2007), 0705658104. by Sergey I. Nikolaev, Juan I. Montoya-Burgos, Konstantin Popadin, et al.Leila Parand, Elliott H. Margulies, National, Stylianos E. Antonarakis posted to evolution by cjeans on 2007-12-12 10:24:10 as along with 5 people and 1 group pradiptaray djkt zwang cisevol aprasad cis-regulatory-evolution
	Analysis of the human protein interactome and comparison with yeast, worm and fly interaction datasets [My Copy] Nature Genetics, Vol. 38, No. 3. (24 February 2006), pp. 285-293. by T. K. B. Gandhi, Jun Zhong, Suresh Mathivanan, et al.L. Karthick, K. N. Chandrika, Sujatha S. Mohan, Salil Sharma, Stefan Pinkert, Shilpa Nagaraju, Balamurugan Periaswamy, Goparani Mishra, Kannabiran Nandakumar, Beiyi Shen, Nandan Deshpande, Rashmi Nayak, Malabika Sarker, Jef D. Boeke, Giovanni Parmigiani, Jörg Schultz, Joel S. Bader, Akhilesh Pandey posted to evolution pin ppi by cjeans on 2007-12-10 10:24:26 as along with 14 people and 2 groups semin yyby aprildh31 balajis indigoviolet tny spavey TheresaNiederberger alwinpremanand dejori Pao-Yang pmendes carlk cerca EisenLab FAB-lab
	Tests for comparing related amino-acid sequences. Cytochrome c and cytochrome c551 [My Copy] Journal of Molecular Biology, Vol. 61, No. 2. (28 October 1971), pp. 409-424. by A. D. Mclachlan posted to correlated-mutation evolution by cjeans on 2007-12-02 11:17:13 as along with 1 person Lombardo_7
	Molecular evolution in large genetic networks: does connectivity equal constraint? [My Copy] Journal of molecular evolution, Vol. 58, No. 2. (February 2004), pp. 203-211. by M. W. Hahn, G. C. Conant, A. Wagner posted to evolution network by cjeans on 2007-12-02 11:14:36 as along with 3 people and 1 group chica diamantis penka Nie
	Two types of amino acid substitutions in protein evolution. [My Copy] J Mol Evol, Vol. 12, No. 3. (15 March 1979), pp. 219-236. by T. Miyata, S. Miyazawa, T. Yasunaga posted to evolution by cjeans on 2007-12-02 11:13:17 as along with 1 person Iden-J_GluR
	A pair-to-pair amino acids substitution matrix and its applications for protein structure prediction. [My Copy] Proteins, Vol. 67, No. 1. (1 April 2007), pp. 142-153. by E. Eyal, M. Frenkel-Morgenstern, V. Sobolev, S. Pietrokovski posted to coevolution correlated-mutation evolution by cjeans on 2007-12-02 10:45:50 as along with 5 people dfdong qluo RebeccaHamer bicko Lombardo_7
	Gene conversion as a focusing mechanism for correlated mutations: a hypothesis. [My Copy] Mol Gen Genet, Vol. 251, No. 5. (19 July 1996), pp. 503-508. by J. Ninio posted to correlated-mutation evolution hypothesis by cjeans on 2007-12-01 08:22:07 as
	Single and coincident intragenic mutations attributable to gene conversion in a human cell line. [My Copy] Genetics, Vol. 146, No. 4. (August 1997), pp. 1429-1439. by C. R. Giver, A. J. Grosovsky posted to correlated-mutation evolution by cjeans on 2007-12-01 07:49:53 as
	Evolution of Two-Component Signal Transduction [My Copy] Mol Biol Evol, Vol. 17, No. 12. (1 December 2000), pp. 1956-1970. by Kristin K. Koretke, Andrei N. Lupas, Patrick V. Warren, Martin Rosenberg, James R. Brown posted to coevolution evolution by cjeans on 2007-12-01 07:29:46 as along with 2 people mgomes tale
	Sequence evolution and the mechanism of protein folding. [My Copy] Biophys J, Vol. 79, No. 4. (October 2000), pp. 1787-1799. by A. R. Ortiz, J. Skolnick posted to evolution sequence structure by cjeans on 2007-12-01 07:16:13 as along with 2 people and 2 groups marcius penka BioinfoCIPF SGU-CIPF
	The Effect of Stochasticity on the Lac Operon: An Evolutionary Perspective [My Copy] PLoS Computational Biology, Vol. 3, No. 6. (1 June 2007), e111. by Milan van Hoek, Paulien Hogeweg posted to evolution simulation by cjeans on 2007-12-01 02:53:45 as along with 3 people Retchless madhadron proulx
	POINT: a database for the prediction of protein-protein interactions based on the orthologous interactome [My Copy] Bioinformatics, Vol. 20, No. 17. (22 November 2004), pp. 3273-3276. by Tao-Wei Huang, An-Chi Tien, Wen-Shien Huang, et al.Yuan-Chii G. Lee, Chin-Lin Peng, Huei-Hun Tseng, Cheng-Yan Kao, Chi-Ying F. Huang posted to evolution ortholog ppi by cjeans on 2007-11-30 06:47:59 as along with 1 person cerca
	Evolutionary predictions of binding surfaces and interactions [My Copy] Current Opinion in Structural Biology, Vol. 12, No. 1. (1 February 2002), pp. 21-27. by Olivier Lichtarge, Mathew E. Sowa posted to evolution interface ppi by cjeans on 2007-11-30 01:14:28 as along with 1 person Pao-Yang
	Protein interaction networks from yeast to human. [My Copy] Current opinion in structural biology, Vol. 14, No. 3. (June 2004), pp. 292-299. by Peer Bork, Lars J. Jensen, Christian von Mering, Arun K. Ramani, Insuk Lee, Edward M. Marcotte posted to evolution pin ppi by cjeans on 2007-11-30 00:58:27 as along with 9 people aelef jiny kuhn koller grahamc lpfernandes selrac Evangelia larsjuhljensen
	Determination of protein function, evolution and interactions by structural genomics [My Copy] Current Opinion in Structural Biology, Vol. 11, No. 3. (1 June 2001), pp. 354-363. by Sarah A. Teichmann, Alexey G. Murzin, Cyrus Chothia posted to evolution genome ppi structure by cjeans on 2007-11-28 09:47:51 as along with 1 person ramiro2k
	Conserved patterns of protein interaction in multiple species. [My Copy] Proceedings of the National Academy of Sciences of the United States of America, Vol. 102, No. 6. (8 February 2005), pp. 1974-1979. by Roded Sharan, Silpa Suthram, Ryan M. Kelley, et al.Tanja Kuhn, Scott McCuine, Peter Uetz, Taylor Sittler, Richard M. Karp, Trey Ideker posted to evolution ppi by cjeans on 2007-11-28 00:40:00 as along with 18 people and 2 groups chica kiekyon thegoose2 robfsouza carlk tharris jiny sza dragonrez okarsligil balajis nuke2005 maryee gurkanbebek koller iris_2001 maralena mdstobbe C. elegans / WormBase Bioinformatics
	Are protein-protein interfaces more conserved in sequence than the rest of the protein surface? [My Copy] Protein science : a publication of the Protein Society, Vol. 13, No. 1. (January 2004), pp. 190-202. by D. R. Caffrey, S. Somaroo, J. D. Hughes, J. Mintseris, E. S. Huang posted to evolution interface ppi by cjeans on 2007-11-28 00:20:51 as along with 4 people chica bicko Evangelia higueruelo
	Phenotypic Mutation Rates and the Abundance of Abnormal Proteins in Yeast [My Copy] PLoS Computational Biology, Vol. 3, No. 11. (1 November 2007), e203. by Martin Willensdorfer, Reinhard Bürger, Martin A. Nowak posted to evolution by cjeans on 2007-11-27 01:50:13 as
	On Evolutionary Conservation of Thermodynamic Coupling in Proteins [My Copy] Journal of Biological Chemistry, Vol. 279, No. 18. (30 April 2004), pp. 19046-19050. by Anthony A. Fodor, Richard W. Aldrich posted to correlated-mutation evolution by cjeans on 2007-11-26 08:38:08 as along with 8 people and 2 groups dfdong ana barry gbart tale friendpine ca3295 Lombardo_7 structural_bioinformatics Bioinformatics
	Structural divergence and distant relationships in proteins: evolution of the globins. [My Copy] Current opinion in structural biology, Vol. 15, No. 3. (June 2005), pp. 290-301. by Juliette T. Lecomte, David A. Vuletich, Arthur M. Lesk posted to evolution sequence structure by cjeans on 2007-11-26 06:46:33 as along with 1 person martainn
	Scoring docking models with evolutionary information. [My Copy] Proteins, Vol. 60, No. 2. (1 August 2005), pp. 275-280. by M. Tress, D. de Juan, O. Graña, et al.M. J. Gómez, P. Gómez-Puertas, J. M. González, G. López, A. Valencia posted to docking evolution ppi structure by cjeans on 2007-11-26 06:38:20 as along with 3 people and 2 groups bicko marcius ameetsoni BioinfoCIPF SGU-CIPF
	Exploring a Phylogenetic Approach for the Detection of Correlated Substitutions in Proteins [My Copy] Mol Biol Evol, Vol. 17, No. 11. (1 November 2000), pp. 1753-1759. by Pierre Tuff, Pierre Darlu posted to coevolution evolution sequence by cjeans on 2007-11-26 06:33:55 as along with 1 person tale
	An insight into domain combinations. [My Copy] Bioinformatics, Vol. 17 Suppl 1 (2001) by G. Apic, J. Gough, S. A. Teichmann posted to domain evolution by cjeans on 2007-11-26 02:30:40 as along with 4 people wiedenhoeft swp09 choonpeng gulkur
	Structure, function and evolution of multidomain proteins. [My Copy] Current opinion in structural biology, Vol. 14, No. 2. (April 2004), pp. 208-216. by Christine Vogel, Matthew Bashton, Nicola D. Kerrison, Cyrus Chothia, Sarah A. Teichmann posted to domain evolution structure by cjeans on 2007-11-26 02:30:13 as along with 5 people and 1 group wiedenhoeft dgront Einat Schmidtc cmzmasek structural_bioinformatics
	The linked conservation of structure and function in a family of high diversity: the monomeric cupredoxins. [My Copy] Structure, Vol. 12, No. 6. (June 2004), pp. 917-925. by J. Gough, C. Chothia posted to domain evolution by cjeans on 2007-11-26 02:29:50 as along with 1 person and 1 group Einat structural_bioinformatics
	The relationship between domain duplication and recombination. [My Copy] Journal of molecular biology, Vol. 346, No. 1. (11 February 2005), pp. 355-365. by Christine Vogel, Sarah A. Teichmann, Jose Pereira-Leal posted to domain evolution by cjeans on 2007-11-26 02:29:29 as along with 5 people and 4 groups ana marcius tny martainn mdimon structural_bioinformatics Bioinformatics BioinfoCIPF SGU-CIPF
	Relative rates of gene fusion and fission in multi-domain proteins. [My Copy] Trends Genet, Vol. 21, No. 1. (January 2005), pp. 25-30. by S. K. Kummerfeld, S. A. Teichmann posted to domain evolution by cjeans on 2007-11-26 02:29:14 as along with 3 people wiedenhoeft mingzhi gulkur
	The evolution of domain arrangements in proteins and interaction networks. [My Copy] Cell Mol Life Sci, Vol. 62, No. 4. (February 2005), pp. 435-445. by E. Bornberg-Bauer, F. Beaussart, S. K. Kummerfeld, S. A. Teichmann, J. Weiner posted to domain evolution by cjeans on 2007-11-26 02:28:57 as along with 4 people agustinarce choonpeng cmzmasek gulkur
	The properties of protein family space depend on experimental design [My Copy] Bioinformatics, Vol. 21, No. 11. (1 June 2005), pp. 2618-2622. by Victor Kunin, Sarah A. Teichmann, Martijn A. Huynen, Christos A. Ouzounis posted to domain evolution structure by cjeans on 2007-11-26 02:28:37 as along with 2 people and 2 groups ana barry structural_bioinformatics Bioinformatics

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evolution	149
ppi	115
structure	100
network	87
domain	82
sequence	79
coiled-coil	57
system-biology	54
coevolution	48
database	43
expression	40
interface	39
interaction	34
transcription	33
regulation	33
correlated-mutation	32
integrative	29
sample	28
experiment	23
phylogenetic	20
prediction	20
bzip	17
microarray	16
function	16
pin	16
design	16
docking	15
tissue-specific	14
tfbs	14
protein	13
genome-wide	12
genome	12
noise	11
motif	11
rna	11
residues	10
virus	10
trn	9
modification	9
compare-genomics	9
drug	9
hmm	9
algorithm	9
membrane-traffic	9
post-translation	9
ortholog	9
contact	9
human	8
module	8
transcriptome	8
phenotype	7
dataset	7
metabolic	7
applied-math	7
text-mining	7
cancer	7
ubiquitin	7
pathogen	7
classic	6
simulation	6
f1000	6
statistics	6
disease	6
hypothesis	6
theory	6
msa	6
genetics	6
hiv	5
cell-cycle	5
proteome	5
modelling	5
critical	5
ddi	5
xml	5
profile	4
detect	4
est	4
nervous-system	4
bio-math	4
paralog	4
signaling	4
plant	4
ancestral-sequence-reconstruction	3
landscape	3
neuroscience	3
chromatin	3
blast	3
fitness	3
pathway	3
mirrortree	3
ecology	3
sample-structure	3
physics	3
autophagy	3
gc-content	2
chothia	2
machine-learning	2
homology	2
duplication	2
go	2
microrna	2
spb	2
sample-domain	2
model	2
software	2
tropomyosin	2
iup	2
bayesian	2
omics	2
yeast	2
essay	2
substitution	2
clustering	2
sample-gene	2
phosphorylation	2
directed-evolution	2
fragment	2
biotech	2
ww	1
topology	1
ms	1
molecular-dynamics	1
math	1
positive-selection	1
antigenic-variation	1
pssm	1
sample-phenomenon	1
ai	1
forest	1
ligand	1
kyle	1
threading	1
standards	1
snp	1
protein-abundance	1
endocytosis	1
assessment	1
structural-genomics	1
grn	1
worm	1
non-parameter	1
interolog	1
resources	1
sh2	1
gibbs-sampler	1
tree-comparison	1
write	1
snare	1
rate	1
flu	1
single-molecule	1
sumo	1
test	1
energy	1
tips	1
translation	1
ecoli	1
align-free	1
sna	1
brain	1
wilcoxon-test	1
graph	1
pairwise	1
shuffling	1
epigenetics	1
sca	1
sample-network	1

cjeans's evolution [149 articles] Export Sort

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