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	Universality and diversity of folding mechanics for three-helix bundle proteins [My Copy] Proceedings of the National Academy of Sciences (14 January 2008), 0707284105. by Jae S. Yang, Stefan Wallin, Eugene I. Shakhnovich posted to structure by cjeans on 2008-01-15 07:19:17 as
	Matt: Local Flexibility Aids Protein Multiple Structure Alignment [My Copy] PLoS Computational Biology, Vol. 4, No. 1. (1 January 2008), e10. by Matthew Menke, Bonnie Berger, Lenore Cowen posted to sequence structure by cjeans on 2008-01-14 03:31:23 as
	Preferred side-chain constellations at antiparallel coiled-coil interfaces. [My Copy] Proceedings of the National Academy of Sciences of the United States of America, Vol. 105, No. 2. (15 January 2008), pp. 530-535. by Erik B. Hadley, Oliver D. Testa, Derek N. Woolfson, Samuel H. Gellman posted to coiled-coil design structure by cjeans on 2008-01-10 09:42:03 as along with 5 people zwang phoenixzxl kgutwin patrickking chdnw
	A threading-based method (FINDSITE) for ligand-binding site prediction and functional annotation [My Copy] Proceedings of the National Academy of Sciences (28 December 2007), 0707684105. by Michal Brylinski, Jeffrey Skolnick posted to prediction structure by cjeans on 2007-12-30 03:25:06 as along with 2 people iaolier zwang
	Proteomics: Solving a 3D jigsaw puzzle : Article : Nature Reviews Molecular Cell Biology [My Copy] posted to structure system-biology by cjeans on 2007-12-21 03:10:30 as
	The molecular sociology of the cell [My Copy] Nature, Vol. 450, No. 7172. (12 December 2007), pp. 973-982. by Carol V. Robinson, Andrej Sali, Wolfgang Baumeister posted to structure system-biology by cjeans on 2007-12-21 03:10:18 as along with 8 people mijam guhjy cmmorel chad_davis grahamc phoenixzxl higueruelo megraw
	Identification of rare slipknots in proteins and their implications for stability and folding. [My Copy] J Mol Biol, Vol. 373, No. 1. (12 October 2007), pp. 153-166. by N. P. King, E. O. Yeates, T. O. Yeates posted to structure by cjeans on 2007-12-20 01:21:09 as along with 1 person jwm
	The origin of protein interactions and allostery in colocalization. [My Copy] Nature, Vol. 450, No. 7172. (13 December 2007), pp. 983-990. by John Kuriyan, David Eisenberg posted to ppi protein structure by cjeans on 2007-12-18 13:40:36 as along with 7 people and 1 group mittinatten yanjiang ynaito sobolevnrm mingzhi phoenixzxl higueruelo baker-group
	Combining Efficient Conformational Sampling with a Deformable Elastic Network Model Facilitates Structure Refinement at Low Resolution [My Copy] Structure, Vol. 15, No. 12. (13 December 2007), pp. 1630-1641. by Gunnar F. Schroder, Axel T. Brunger, Michael Levitt posted to network structure by cjeans on 2007-12-12 12:31:40 as along with 4 people and 1 group aqeel sobolevnrm jlh64 TOchi baker-group
	Collecting Butterflies and the Protein Structure Initiative: The Right Questions? [My Copy] Structure, Vol. 15, No. 12. (13 December 2007), pp. 1523-1524. by Thomas A. Steitz posted to structural-genomics structure by cjeans on 2007-12-12 12:30:47 as along with 2 people chrishmorris rph
	Modeling Backbone Flexibility Improves Protein Stability Estimation [My Copy] Structure, Vol. 15, No. 12. (13 December 2007), pp. 1567-1576. by Shuangye Yin, Feng Ding, Nikolay V. Dokholyan posted to structure by cjeans on 2007-12-12 12:23:56 as along with 1 person aalibes
	Determining promoter location based on DNA structure first-principles calculations. [My Copy] Genome Biology, Vol. 8, No. 12. (2007) by Ramon J. Goni, Alberto Perez, David Torrents, Modesto Orozco posted to structure tfbs by cjeans on 2007-12-12 10:32:21 as along with 4 people orzenil megraw nklee maximilianh
	Stereochemical Criteria for Prediction of the Effects of Proline Mutations on Protein Stability [My Copy] PLoS Computational Biology, Vol. 3, No. 12. (1 December 2007), e241. by Kanika Bajaj, M. S. Madhusudhan, Bharat V. Adkar, et al.Purbani Chakrabarti, C. Ramakrishnan, Andrej Sali, Raghavan Varadarajan posted to structure by cjeans on 2007-12-08 06:44:25 as
	The Modular Organization of Domain Structures: Insights into Protein–Protein Binding [My Copy] PLoS Computational Biology, Vol. 3, No. 12. (1 December 2007), e239. by Del, Pablo Carbonell posted to domain ppi structure by cjeans on 2007-12-08 06:40:10 as along with 9 people bicko chad_davis choonpeng grahamc zwang niallhaslam biehl marti carlk
	Principles underlying energetic coupling along an allosteric communication trajectory of a voltage-activated K+ channel [My Copy] Proceedings of the National Academy of Sciences (5 December 2007), 0708120104. by Evgeniya Sadovsky, Ofer Yifrach posted to structure by cjeans on 2007-12-06 23:47:09 as along with 1 person and 1 group sobolevnrm baker-group
	Localizing frustration in native proteins and protein assemblies [My Copy] Proceedings of the National Academy of Sciences (5 December 2007), 0709915104. by Diego U. Ferreiro, Joseph A. Hegler, Elizabeth A. Komives, Peter G. Wolynes posted to interface ppi structure by cjeans on 2007-12-06 23:43:25 as along with 2 people and 1 group cactus sobolevnrm baker-group
	Structure-function-rescue: the diverse nature of common p53 cancer mutants. [My Copy] Oncogene, Vol. 26, No. 15. (2 April 2007), pp. 2226-2242. by A. C. Joerger, A. R. Fersht posted to cancer function structure by cjeans on 2007-12-02 11:55:03 as along with 1 person Petersarkies
	LTHREADER: prediction of ligand-receptor interactions using localized threading. [My Copy] Pac Symp Biocomput (2007), pp. 64-75. by V. Pulim, J. Bienkowska, B. Berger posted to structure threading by cjeans on 2007-12-02 10:29:30 as
	Structural Diversity in a Family of Homologous Proteins [My Copy] Journal of Molecular Biology, Vol. 258, No. 2. (3 May 1996), pp. 349-366. by Krzysztof Pawlowski, Andrzej Bierzynski, Adam Godzik posted to homology structure by cjeans on 2007-12-01 08:21:04 as along with 1 person dfdong
	Effective use of sequence correlation and conservation in fold recognition. [My Copy] Journal of molecular biology, Vol. 293, No. 5. (12 November 1999), pp. 1221-1239. by O. Olmea, B. Rost, A. Valencia posted to correlated-mutation structure by cjeans on 2007-12-01 07:56:45 as along with 2 people qluo gbart
	Fold assembly of small proteins using Monte Carlo simulations driven by restraints derived from multiple sequence alignments [My Copy] Journal of Molecular Biology, Vol. 277, No. 2. (27 March 1998), pp. 419-448. by Angel R. Ortiz, Andrzej Kolinski, Jeffrey Skolnick posted to correlated-mutation structure by cjeans on 2007-12-01 07:54:55 as
	Sequence evolution and the mechanism of protein folding. [My Copy] Biophys J, Vol. 79, No. 4. (October 2000), pp. 1787-1799. by A. R. Ortiz, J. Skolnick posted to evolution sequence structure by cjeans on 2007-12-01 07:16:13 as along with 2 people and 2 groups marcius penka BioinfoCIPF SGU-CIPF
	Structure and dynamics of a molten globular enzyme. [My Copy] Nat Struct Mol Biol (11 November 2007) by Konstantin Pervushin, Katherina Vamvaca, Beat Vögeli, Donald Hilvert posted to sample structure by cjeans on 2007-12-01 03:17:36 as along with 2 people and 1 group cactus sobolevnrm baker-group
	G protein-coupled receptors: In silico drug discovery in 3D [My Copy] posted to drug structure by cjeans on 2007-11-30 07:10:58 as
	A complex prediction: three-dimensional model of the yeast exosome [My Copy] posted to structure by cjeans on 2007-11-30 07:09:49 as
	A simple physical model for binding energy hot spots in proteinâprotein complexes [My Copy] Proceedings of the National Academy of Sciences of the United States of America, Vol. 99, No. 22. (29 October 2002), pp. 14116-14121. by Tanja Kortemme, David Baker posted to interaction interface ppi structure by cjeans on 2007-11-30 01:00:01 as along with 8 people and 1 group chemrahul82 onufriev oceanwind lna jwm bicko hmk skoddet Nielsen group
	Cell biology: Pore puzzle [My Copy] Nature, Vol. 450, No. 7170. (28 November 2007), pp. 621-622. by John D. Aitchison, Richard W. Wozniak posted to structure by cjeans on 2007-11-30 00:57:03 as along with 1 person megraw
	Multimeric threading-based prediction of protein-protein interactions on a genomic scale: application to the Saccharomyces cerevisiae proteome. [My Copy] Genome Res, Vol. 13, No. 6A. (June 2003), pp. 1146-1154. by L. Lu, A. K. Arakaki, H. Lu, J. Skolnick posted to ppi structure by cjeans on 2007-11-29 09:50:22 as along with 5 people and 1 group bicko mdimmic lfriedl chad_davis ruvido kdl
	The molecular architecture of the nuclear pore complex [My Copy] Nature, Vol. 450, No. 7170. (29 November 2007), pp. 695-701. by Frank Alber, Svetlana Dokudovskaya, Liesbeth M. Veenhoff, et al.Wenzhu Zhang, Julia Kipper, Damien Devos, Adisetyantari Suprapto, Orit Karni-Schmidt, Rosemary Williams, Brian T. Chait, Andrej Sali, Michael P. Rout posted to simulation structure by cjeans on 2007-11-29 06:20:43 as along with 9 people kgutwin MatthiasReimann hadesnumb chad_davis neils zwang mkikkawa faion phoenixzxl
	Determining the architectures of macromolecular assemblies [My Copy] Nature, Vol. 450, No. 7170. (29 November 2007), pp. 683-694. by Frank Alber, Svetlana Dokudovskaya, Liesbeth M. Veenhoff, et al.Wenzhu Zhang, Julia Kipper, Damien Devos, Adisetyantari Suprapto, Orit Karni-Schmidt, Rosemary Williams, Brian T. Chait, Michael P. Rout, Andrej Sali posted to simulation structure by cjeans on 2007-11-29 06:17:52 as along with 9 people mijam bicko chad_davis neils zwang CameronNeylon faion phoenixzxl higueruelo
	Determination of protein function, evolution and interactions by structural genomics [My Copy] Current Opinion in Structural Biology, Vol. 11, No. 3. (1 June 2001), pp. 354-363. by Sarah A. Teichmann, Alexey G. Murzin, Cyrus Chothia posted to evolution genome ppi structure by cjeans on 2007-11-28 09:47:51 as along with 1 person ramiro2k
	A structural perspective on protein-protein interactions. [My Copy] Curr Opin Struct Biol, Vol. 14, No. 3. (June 2004), pp. 313-324. by R. B. Russell, F. Alber, P. Aloy, et al.F. P. Davis, D. Korkin, M. Pichaud, M. Topf, A. Sali posted to ppi structure by cjeans on 2007-11-28 09:44:40 as along with 13 people and 1 group baaden bicko anita chad_davis dgront sriram_s ruvido Evangelia Pao-Yang marti higueruelo jteyra timg structure-bii
	Computational methods of analysis of protein-protein interactions [My Copy] Current Opinion in Structural Biology, Vol. 13, No. 3. (June 2003), pp. 377-382. by Lukasz Salwinski, David Eisenberg posted to ppi structure by cjeans on 2007-11-28 00:23:28 as
	Docking and scoring protein complexes: CAPRI 3rd Edition [My Copy] Proteins: Structure, Function, and Bioinformatics, Vol. 9999, No. 9999. (2007), NA. by Marc F. Lensink, Raúl Méndez, Shoshana J. Wodak posted to docking interaction interface ppi structure by cjeans on 2007-11-27 08:32:55 as along with 9 people and 1 group mgomes flbarroso csrocha bicko ruvido carlescorbi yalexeev middledomain timg structural_bioinformatics
	High-resolution protein–protein docking [My Copy] Current Opinion in Structural Biology In Theory and simulation/Macromolecular assemblages - Joel Janin and Michael Levitt/Edward H Egelman and Andrew GW Leslie, Vol. 16, No. 2. (April 2006), pp. 183-193. by J GRAY, posted to docking interaction ppi structure by cjeans on 2007-11-27 08:30:17 as along with 8 people rabio flbarroso aqeel jwm ima bluvsh1 ruvido higueruelo
	Prediction and design of macromolecular structures and interactions. [My Copy] Philos Trans R Soc Lond B Biol Sci, Vol. 361, No. 1467. (29 March 2006), pp. 459-463. by D. Baker posted to design interaction structure by cjeans on 2007-11-27 08:27:11 as
	Three-dimensional cluster analysis identifies interfaces and functional residue clusters in proteins. [My Copy] J Mol Biol, Vol. 307, No. 5. (13 April 2001), pp. 1487-1502. by R. Landgraf, I. Xenarios, D. Eisenberg posted to sequence structure by cjeans on 2007-11-27 08:26:36 as along with 8 people and 2 groups dfdong ramiro2k barry pansapiens sriram_s mingzhi Pao-Yang marti structural_bioinformatics Bioinformatics
	Predicted protein-protein interaction sites from local sequence information. [My Copy] FEBS Lett, Vol. 544, No. 1-3. (5 June 2003), pp. 236-239. by Y. Ofran, B. Rost posted to ppi sequence structure by cjeans on 2007-11-27 06:05:36 as
	HotPatch: a statistical approach to finding biologically relevant features on protein surfaces. [My Copy] Journal of molecular biology, Vol. 369, No. 3. (8 June 2007), pp. 863-879. by Frank K. Pettit, Emiko Bare, Albert Tsai, James U. Bowie posted to ppi structure by cjeans on 2007-11-27 05:52:09 as along with 3 people ubcg08l iaolier bicko
	Protein-protein interaction hotspots carved into sequences. [My Copy] PLoS computational biology, Vol. 3, No. 7. (13 July 2007) by Yanay Ofran, Burkhard Rost posted to ppi sequence structure by cjeans on 2007-11-27 05:44:13 as along with 9 people and 2 groups superpyrin qluo bicko dchughes grahamc zwang Jporci Pao-Yang higueruelo G4ID Genetics-of-Gambling
	Structure-Templated Predictions of Novel Protein Interactions from Sequence Information [My Copy] PLoS Computational Biology, Vol. 3, No. 9. (1 September 2007), e182. by Doron Betel, Kevin E. Breitkreuz, Ruth Isserlin, Danielle Dewar-Darch, Mike Tyers, Christopher W. Hogue posted to ppi sequence structure by cjeans on 2007-11-27 05:43:32 as along with 3 people agustinarce zwang winterschlaefer
	Predicting protein function from sequence and structure [My Copy] Nature Reviews Molecular Cell Biology, Vol. 8, No. 12. (01 December 2007), pp. 995-1005. by David Lee, Oliver Redfern, Christine Orengo posted to function sequence structure by cjeans on 2007-11-27 00:46:11 as along with 14 people and 1 group dbikard operon michaelbarton smpraveena MarcoAlvarez skhadar neils zwang Evangelia hpaces Ema renatomilani kluck janasont MuraLab
	Protein folding rates estimated from contact predictions. [My Copy] J Mol Biol, Vol. 348, No. 3. (6 May 2005), pp. 507-512. by M. Punta, B. Rost posted to contact structure by cjeans on 2007-11-26 11:46:23 as along with 1 person aalibes
	Structural divergence and distant relationships in proteins: evolution of the globins. [My Copy] Current opinion in structural biology, Vol. 15, No. 3. (June 2005), pp. 290-301. by Juliette T. Lecomte, David A. Vuletich, Arthur M. Lesk posted to evolution sequence structure by cjeans on 2007-11-26 06:46:33 as along with 1 person martainn
	Scoring docking models with evolutionary information. [My Copy] Proteins, Vol. 60, No. 2. (1 August 2005), pp. 275-280. by M. Tress, D. de Juan, O. Graña, et al.M. J. Gómez, P. Gómez-Puertas, J. M. González, G. López, A. Valencia posted to docking evolution ppi structure by cjeans on 2007-11-26 06:38:20 as along with 3 people and 2 groups bicko marcius ameetsoni BioinfoCIPF SGU-CIPF
	Structure, function and evolution of multidomain proteins. [My Copy] Current opinion in structural biology, Vol. 14, No. 2. (April 2004), pp. 208-216. by Christine Vogel, Matthew Bashton, Nicola D. Kerrison, Cyrus Chothia, Sarah A. Teichmann posted to domain evolution structure by cjeans on 2007-11-26 02:30:13 as along with 5 people and 1 group wiedenhoeft dgront Einat Schmidtc cmzmasek structural_bioinformatics
	The properties of protein family space depend on experimental design [My Copy] Bioinformatics, Vol. 21, No. 11. (1 June 2005), pp. 2618-2622. by Victor Kunin, Sarah A. Teichmann, Martijn A. Huynen, Christos A. Ouzounis posted to domain evolution structure by cjeans on 2007-11-26 02:28:37 as along with 2 people and 2 groups ana barry structural_bioinformatics Bioinformatics
	Prediction of distant residue contacts with the use of evolutionary information. [My Copy] Proteins, Vol. 58, No. 4. (1 March 2005), pp. 935-949. by S. Vicatos, B. V. Reddy, Y. Kaznessis posted to coevolution correlated-mutation sequence structure by cjeans on 2007-11-25 10:44:34 as
	A model of globin evolution. [My Copy] Gene, Vol. 398, No. 1-2. (15 August 2007), pp. 132-142. by S. N. Vinogradov, D. Hoogewijs, X. Bailly, et al.K. Mizuguchi, S. Dewilde, L. Moens, J. R. Vanfleteren posted to evolution structure by cjeans on 2007-11-25 09:46:30 as
	A First-Principles Model of Early Evolution: Emergence of Gene Families, Species, and Preferred Protein Folds [My Copy] PLoS Comput Biol, Vol. 3, No. 7. (13 July 2007), e139. by Konstantin B. Zeldovich, Peiqiu Chen, Boris E. Shakhnovich, Eugene I. Shakhnovich posted to evolution structure by cjeans on 2007-11-25 09:45:30 as along with 6 people BioNica grahamc zwang Jporci farhat biinins

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evolution	149
ppi	115
structure	100
network	87
domain	82
sequence	79
coiled-coil	57
system-biology	54
coevolution	48
database	43
expression	40
interface	39
interaction	34
transcription	33
regulation	33
correlated-mutation	32
integrative	29
sample	28
experiment	23
phylogenetic	20
prediction	20
bzip	17
microarray	16
function	16
pin	16
design	16
docking	15
tissue-specific	14
tfbs	14
protein	13
genome-wide	12
genome	12
noise	11
motif	11
rna	11
residues	10
virus	10
trn	9
modification	9
compare-genomics	9
drug	9
hmm	9
algorithm	9
membrane-traffic	9
post-translation	9
ortholog	9
contact	9
human	8
module	8
transcriptome	8
phenotype	7
dataset	7
metabolic	7
applied-math	7
text-mining	7
cancer	7
ubiquitin	7
pathogen	7
classic	6
simulation	6
f1000	6
statistics	6
disease	6
hypothesis	6
theory	6
msa	6
genetics	6
hiv	5
cell-cycle	5
proteome	5
modelling	5
critical	5
ddi	5
xml	5
profile	4
detect	4
est	4
nervous-system	4
bio-math	4
paralog	4
signaling	4
plant	4
ancestral-sequence-reconstruction	3
landscape	3
neuroscience	3
chromatin	3
blast	3
fitness	3
pathway	3
mirrortree	3
ecology	3
sample-structure	3
physics	3
autophagy	3
gc-content	2
chothia	2
machine-learning	2
homology	2
duplication	2
go	2
microrna	2
spb	2
sample-domain	2
model	2
software	2
tropomyosin	2
iup	2
bayesian	2
omics	2
yeast	2
essay	2
substitution	2
clustering	2
sample-gene	2
phosphorylation	2
directed-evolution	2
fragment	2
biotech	2
ww	1
topology	1
ms	1
molecular-dynamics	1
math	1
positive-selection	1
antigenic-variation	1
pssm	1
sample-phenomenon	1
ai	1
forest	1
ligand	1
kyle	1
threading	1
standards	1
snp	1
protein-abundance	1
endocytosis	1
assessment	1
structural-genomics	1
grn	1
worm	1
non-parameter	1
interolog	1
resources	1
sh2	1
gibbs-sampler	1
tree-comparison	1
write	1
snare	1
rate	1
flu	1
single-molecule	1
sumo	1
test	1
energy	1
tips	1
translation	1
ecoli	1
align-free	1
sna	1
brain	1
wilcoxon-test	1
graph	1
pairwise	1
shuffling	1
epigenetics	1
sca	1
sample-network	1

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