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cjeans's transcription [33 articles]

Recent papers added to cjeans's library classified by the tag transcription. You can also see everyone's transcription.
  • Gene transcription: Two worlds merged
    Nature, Vol. 452, No. 7190. (23 April 2008), pp. 946-947.
    by David M Lonard, Bert W O'Malley
    posted to transcription by cjeans on 2008-05-06 01:29:30 as **
  • Alignment Uncertainty and Genomic Analysis
    Science, Vol. 319, No. 5862. (25 January 2008), pp. 473-476.
    by Karen M Wong, Marc A Suchard, John P Huelsenbeck
    posted to regulation transcription by cjeans on 2008-01-25 07:09:15 as ** along with 24 people and 2 groups bpcusack pradiptaray jdelcampo timflutre gracio adacier jyuh bpb aprasad dayjm dpollard tny djkt zwang lisa1 cactus biomcgary lilou kinestetika dandaman gjuggler renatomilani mclarenv youdon EisenLab microbiology_nijmegen
  • Concurrent Fast and Slow Cycling of a Transcriptional Activator at an Endogenous Promoter
    Science, Vol. 319, No. 5862. (25 January 2008), pp. 466-469.
    by Tatiana S Karpova, Min J Kim, Corentin Spriet, Kip Nalley, Timothy J Stasevich, Zoulika Kherrouche, Laurent Heliot, James G Mcnally
    posted to regulation transcription by cjeans on 2008-01-25 07:04:00 as ** along with 3 people djkt margaritis caseybrown
  • Functional evolution of the p53 regulatory network through its target response elements
    Proceedings of the National Academy of Sciences (10 January 2008), 0704694105.
    by Anil G Jegga, Alberto Inga, Daniel Menendez, Bruce J Aronow, Michael A Resnick
    posted to evolution network transcription by cjeans on 2008-01-14 05:28:50 as ** along with 5 people and 1 group brant zwang cisevol idonaldson renatomilani cis-regulatory-evolution
  • Evolution and Selection in Yeast Promoters: Analyzing the Combined Effect of Diverse Transcription Factor Binding Sites
    PLoS Computational Biology, Vol. 4, No. 1. (1 January 2008), e7.
    by Daniela Raijman, Ron Shamir, Amos Tanay
    posted to evolution tfbs transcription by cjeans on 2008-01-14 03:39:27 as **
  • Expression Profiles Reveal Parallel Evolution of Epistatic Interactions Involving the CRP regulon in Escherichia coli
    PLoS Genetics, Vol. preprint, No. 2008. (1 January 2008), e35.eor.
    by Tim F Cooper, Susanna Remold, Rich E Lenski, Dominique Schneider
    posted to evolution expression transcription by cjeans on 2008-01-14 03:17:17 as **
  • Accurate prediction of gene feedback circuit behavior from component properties
    Mol Syst Biol, Vol. 3 (13 November 2007)
    by Nitzan Rosenfeld, Jonathan W Young, Uri Alon, Peter S Swain, Michael B Elowitz
    posted to regulation system-biology transcription by cjeans on 2007-12-20 06:42:20 as ** along with 3 people austin balicea rsantana
  • Programming gene expression with combinatorial promoters
    Mol Syst Biol, Vol. 3 (13 November 2007)
    by Robert S Cox, Michael G Surette, Michael B Elowitz
    posted to expression regulation tfbs transcription transcriptome by cjeans on 2007-12-20 00:55:19 as ** along with 14 people and 2 groups tresch Retchless tmmurali austin dpollard balicea kengg dbikard margaritis lusk zwang discreteonyxorb cabbagezs Ema EisenLab SynBioSys
  • Stalled polymerases and transcriptional regulation
    Nature Genetics, Vol. 39, No. 12., pp. 1421-1422.
    by John W Tamkun
    posted to transcription by cjeans on 2007-12-17 02:30:25 as ** along with 4 people cassj dchughes emptyhb rschulz
  • TRANSCRIPTION: Seven Ups the Code
    Science, Vol. 318, No. 5857. (14 December 2007), pp. 1735-1736.
    by Jeffry L Corden
    posted to regulation transcription by cjeans on 2007-12-14 00:49:26 as ** along with 1 person adrishsen
  • A network of transcriptionally coordinated functional modules in Saccharomyces cerevisiae
    Genome Res., Vol. 15, No. 9. (1 September 2005), pp. 1298-1306.
    by Allegra A Petti, George M Church
    posted to module network transcription by cjeans on 2007-12-13 00:53:44 as **
  • Regulatory Module Network of bHLH Transcription Factors in Mouse Brain
    Genome Biology, Vol. 8 (19 November 2007), R244.
    by Jing Li, Zijing Liu, Yuchun Pan, Qi Liu, Xing Fu, Nigel GF Cooper, Yixue Li, Mengsheng Qiu, Tieliu Shi
    posted to regulation transcription by cjeans on 2007-11-21 06:18:39 as ** along with 2 people roys fpattyn
  • miRNAs control gene expression in the single-cell alga Chlamydomonas reinhardtii
    Nature (30 May 2007)
    by Attila Molnár, Frank Schwach, David J Studholme, Eva C Thuenemann, David C Baulcombe
    posted to regulation rna transcription by cjeans on 2007-07-23 10:07:30 as * along with 2 people and 1 group tardigrade andersbj microRNA
  • Tissue-specific transcriptional regulation has diverged significantly between human and mouse
    Nature Genetics, Vol. 39, No. 6. (21 May 2007), pp. 730-732.
    by Duncan T Odom, Robin D Dowell, Elizabeth S Jacobsen, William Gordon, Timothy W Danford, Kenzie D Macisaac, Alexander P Rolfe, Caitlin M Conboy, David K Gifford, Ernest Fraenkel
    posted to expression regulation tissue-specific transcription by cjeans on 2007-06-30 11:04:51 as **** along with 9 people and 4 groups dpollard gpalidwor dchughes cwbrown djkt maximilianh fpattyn caseybrown yevishere EisenLab G4ID Genetics-of-Gambling cis-regulatory-evolution
  • Co-evolution of transcriptional and post-translational cell-cycle regulation
    Nature (27 September 2006)
    by Lars J Jensen, Thomas S Jensen, Ulrik de Lichtenberg, Søren Brunak, Peer Bork
    posted to cell-cycle coevolution integrative system-biology transcription by cjeans on 2007-06-27 08:22:23 as **** along with 7 people and 1 group JAShapiro adepace koller olympos ccr kluck larsjuhljensen EisenLab
  • Genomics. DNA study forces rethink of what it means to be a gene.
    Science, Vol. 316, No. 5831. (15 June 2007), pp. 1556-1557.
    by E Pennisi
    posted to genetics genome transcription by cjeans on 2007-06-22 10:10:36 as read along with 2 people sebastien_vigneau asddd
  • Coiled coil structures and transcription: an analysis of the S. cerevisiae coilome.
    Mol Genet Genomics (3 May 2007)
    by Kellie E Barbara, Kristine A Willis, Terry M Haley, Stephen J Deminoff, George M Santangelo
    posted to coiled-coil transcription by cjeans on 2007-06-21 15:58:00 as ***** along with 1 person chgjb
  • The many faces of the helix-turn-helix domain: transcription regulation and beyond.
    FEMS Microbiol Rev, Vol. 29, No. 2. (April 2005), pp. 231-262.
    by L Aravind, V Anantharaman, S Balaji, MM Babu, LM Iyer
    posted to evolution network regulation transcription trn by cjeans on 2007-06-20 14:32:11 as *****
  • Genomic analysis of regulatory network dynamics reveals large topological changes.
    Nature, Vol. 431, No. 7006. (16 September 2004), pp. 308-312.
    by NM Luscombe, MM Babu, H Yu, M Snyder, SA Teichmann, M Gerstein
    posted to network regulation transcription trn by cjeans on 2007-06-20 14:24:44 as **** along with 20 people and 6 groups carlk faion camster snuppepuppan hununu icases lna lfriedl alexg nirfriedman dgront nickluscombe kairita comb kengg gespim koller timflutre fishtank rebeccamancy dbk-lab kdl EBI-regulation TNT ColDyn Plantandetc
  • Topology, tinkering and evolution of the human transcription factor network.
    FEBS J, Vol. 272, No. 24. (December 2005), pp. 6423-6434.
    by C Rodriguez-Caso, MA Medina, RV Solé
    posted to human network regulation transcription trn by cjeans on 2007-06-19 13:07:19 as ****
  • Evolutionary Dynamics of Prokaryotic Transcriptional Regulatory Networks
    Journal of Molecular Biology, Vol. 358, No. 2. (28 April 2006), pp. 614-633.
    by Madan, Sarah A Teichmann, L Aravind
    posted to evolution network regulation transcription trn by cjeans on 2007-06-19 13:06:39 as **** along with 4 people Retchless tny tvdbulck timflutre
  • Comprehensive Analysis of Combinatorial Regulation using the Transcriptional Regulatory Network of Yeast
    Journal of Molecular Biology, Vol. In Press, Corrected Proof
    by S Balaji, Madan M Babu, Lakshminarayan M Iyer, Nicholas M Luscombe, L Aravind
    posted to network regulation transcription trn by cjeans on 2007-06-19 13:06:02 as **** along with 2 people tuck gespim
  • Co-evolution of transcription factors and their targets depends on mode of regulation
    Genome Biology, Vol. 7 (19 July 2006), R62.
    by Ruth Hershberg, Hanah Margalit
    posted to coevolution evolution network regulation transcription trn by cjeans on 2007-06-19 13:03:37 as ***** along with 4 people and 2 groups cisevol PetrovLab indigoviolet dpollard cis-regulatory-evolution EisenLab
  • Reconstruction of microbial transcriptional regulatory networks.
    Curr Opin Biotechnol, Vol. 15, No. 1. (February 2004), pp. 70-77.
    by MJ Herrgård, MW Covert, BØ Palsson
    posted to network regulation transcription trn by cjeans on 2007-06-19 13:02:53 as ****
  • Role of the C-terminal domains of rice bZIP proteins RF2a and RF2b in regulating transcription.
    Biochem J (20 March 2007)
    by Yi Liu, Shunhong Dai, Roger N Beachy
    posted to bzip coiled-coil transcription by cjeans on 2007-06-18 14:04:43 as **
  • bZIP proteins of human gammaherpesviruses.
    J Gen Virol, Vol. 84, No. Pt 8. (August 2003), pp. 1941-1949.
    by AJ Sinclair
    posted to bzip coiled-coil interaction transcription virus by cjeans on 2007-06-18 10:30:55 as **** along with 2 people hplatero gwenknight
  • One billion years of bZIP transcription factor evolution: conservation and change in dimerization and DNA-binding site specificity.
    Mol Biol Evol, Vol. 24, No. 3. (March 2007), pp. 827-835.
    by GD Amoutzias, AS Veron, J Weiner, M Robinson-Rechavi, E Bornberg-Bauer, SG Oliver, DL Robertson
    posted to bzip coiled-coil evolution transcription by cjeans on 2007-06-18 10:24:41 as ****
  • Life cycle transcriptome of the malaria mosquito Anopheles gambiae and comparison with the fruitfly Drosophila melanogaster
    PNAS (11 June 2007), 0703988104.
    by Anastasios C Koutsos, Claudia Blass, Stephan Meister, Sabine Schmidt, Robert M Maccallum, Marcelo B Soares, Frank H Collins, Vladimir Benes, Evgeny Zdobnov, Fotis C Kafatos, George K Christophides
    posted to compare-genomics expression sequence transcription by cjeans on 2007-06-12 10:30:18 as ** along with 2 people and 1 group dpollard george_g EisenLab
  • Chromosomal periodicity of evolutionarily conserved gene pairs
    PNAS (11 June 2007), 0610776104.
    by Matthew A Wright, Peter Kharchenko, George M Church, Daniel Segre
    posted to ecoli evolution transcription by cjeans on 2007-06-12 09:05:41 as ** along with 2 people and 1 group dpollard Manchester EisenLab
  • Large-scale analysis of transcriptional cis-regulatory modules reveals both common features and distinct subclasses
    Genome Biology, Vol. 8 (05 June 2007), R101.
    by Long Li, Qianqian Zhu, Xin He, Saurabh Sinha, Marc S Halfon
    posted to regulation transcription by cjeans on 2007-06-12 07:51:13 as ** along with 4 people and 1 group isimpson dpollard lusk maximilianh EisenLab
  • Hierarchy and feedback in the evolution of the Escherichia coli transcription network
    PNAS, Vol. 104, No. 13. (27 March 2007), pp. 5516-5520.
    by Cosentino, P Jona, B Bassetti, H Isambert
    posted to evolution network transcription by cjeans on 2007-06-10 13:15:32 as **** along with 3 people jjray dquest zwang
  • Analysis of transcriptional activation at a distance in Saccharomyces cerevisiae.
    Mol Cell Biol (25 May 2007)
    by Krista C C Dobi, Fred Winston
    posted to evolution regulation transcription yeast by cjeans on 2007-06-10 10:43:47 as ****
  • Functional sequestration of transcription factor activity by repetitive DNA.
    J Biol Chem (25 May 2007)
    by Xiaowei Liu, Bo Wu, Jaroslaw Szary, Eric M M Kofoed, Fred Schaufele
    posted to regulation transcription by cjeans on 2007-06-10 10:18:24 as **
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