clearbluespring's watchlist [at least 200 articles] Export

Recent papers matching clearbluespring's watchlist criteria

	Transcriptome Complexity in a Genome-Reduced Bacterium [My Copy] Science, Vol. 326, No. 5957. (27 November 2009), pp. 1268-1271. by Marc Guell, Vera van Noort, Eva Yus, et al.Wei-Hua Chen, Justine Leigh-Bell, Konstantinos Michalodimitrakis, Takuji Yamada, Manimozhiyan Arumugam, Tobias Doerks, Sebastian Kuhner, Michaela Rode, Mikita Suyama, Sabine Schmidt, Anne-Claude Gavin, Peer Bork, Luis Serrano posted to transcriptome pyrosequencing bacterium by epigenetics on 2009-11-30 12:47:28 as along with 5 people and 2 groups Vincent_Rouilly jjray djkt balabu jalorenzo iSEEM molnet-macs
	Computation for ChIP-seq and RNA-seq studies. [My Copy] Nature methods, Vol. 6, No. 11 Suppl. (15 November 2009), pp. S22-S32. by Shirley Pepke, Barbara Wold, Ali Mortazavi posted to chipseq-project by epigenetics on 2009-11-18 13:33:11 as along with 23 people and 2 groups urgi Jporci pst timflutre molnet-mna Vincent_Rouilly guhjy cajunsushi mpizbioinfo stubrown hzoltan robertrentzsch xingxu oannes74 tonamswish inesdesantiago Baschl polivares jwfoley druvus GeeSharpMinor chvlyl heliopais molnet-macs Orengo Group Journal Picks
	Use and misuse of the gene ontology annotations [My Copy] Nature Reviews Genetics, Vol. 9, No. 7. (13 May 2008), pp. 509-515. by Seung Yon Rhee, Valerie Wood, Kara Dolinski, Sorin Draghici posted to bioinformatics annotation by epigenetics on 2009-11-18 13:30:54 as along with 40 people and 3 groups singhsh davidmam Thaverkamp druvus dullhunk suizan dolchan Borelli Zephyrus VGreiff klo thomaskelder ilyashl phoenixzxl MarcoAlvarez isakemal bertelsen daforerog jfr djkt guhjy aheilbut mariakmejia cmzmasek A_Olympia realzhang carlk roys gjuggler fpattyn RamuAnandakrishnan ptrobajo giovenko cabbagesofdoom tmmurali renatomilani capitall marck rvosa bpcusack 8_01 logics of knowledge FAB-lab
	MAPK target networks in Arabidopsis thaliana revealed using functional protein microarrays [My Copy] Genes & Development, Vol. 23, No. 1. (1 January 2009), pp. 80-92. by Sorina C. Popescu, George V. Popescu, Shawn Bachan, et al.Zimei Zhang, Mark Gerstein, Michael Snyder, Savithramma P. Dinesh-Kumar posted to cytoscape interactome by epigenetics on 2009-06-18 12:27:57 as
	The Macrophage Colony-Stimulating Factor 1 Response Signature in Breast Carcinoma [My Copy] Clin Cancer Res, Vol. 15, No. 3. (1 February 2009), pp. 778-787. by Andrew H. Beck, Inigo Espinosa, Badreddin Edris, et al.Rui Li, Kelli Montgomery, Shirley Zhu, Sushama Varma, Robert J. Marinelli, Matt van de Rijn, Robert B. West posted to cytoscape interactome by epigenetics on 2009-06-18 12:25:44 as
	Natural selection on gene function drives the evolution of LTR retrotransposon families in the rice genome [My Copy] Genome Research, Vol. 19, No. 2. (24 February 2009), pp. 243-254. by Regina S. Baucom, James C. Estill, Jim Leebens-Mack, Jeffrey L. Bennetzen posted to cytoscape interactome by epigenetics on 2009-06-18 12:25:13 as along with 3 people operon natstreet orzenil
	The Proteome of Seed Development in the Model Legume Lotus japonicus [My Copy] Plant Physiol., Vol. 149, No. 3. (1 March 2009), pp. 1325-1340. by Svend Dam, Brian S. Laursen, Jane H. Ornfelt, et al.Bjarne Jochimsen, Hans H. Staerfeldt, Carsten Friis, Kasper Nielsen, Nicolas Goffard, Soren Besenbacher, Lene Krusell, Shusei Sato, Satoshi Tabata, Ida B. Thogersen, Jan J. Enghild, Jens Stougaard posted to cytoscape interactome by epigenetics on 2009-06-18 12:22:41 as
	Isolation stress for 30 days alters hepatic gene expression profiles, especially with reference to lipid metabolism in mice [My Copy] Physiol. Genomics, Vol. 37, No. 2. (10 April 2009), pp. 79-87. by Keiko Motoyama, Yuji Nakai, Tomoya Miyashita, et al.Yuichiro Fukui, Maki Morita, Kazutsuka Sanmiya, Hiroyuki Sakakibara, Ichiro Matsumoto, Keiko Abe, Takafumi Yakabe, Nobuhiro Yajima, Kayoko Shimoi posted to cytoscape interactome by epigenetics on 2009-06-18 12:20:29 as
	Muscle genome-wide expression profiling during disease evolution in mdx mice [My Copy] Physiol. Genomics, Vol. 37, No. 2. (10 April 2009), pp. 119-132. by Mario Marotta, Claudia Ruiz-Roig, Yaris Sarria, et al.Jose L. Peiro, Fatima Nunez, Julian Ceron, Francina Munell, Manuel Roig-Quilis posted to cytoscape interactome by epigenetics on 2009-06-18 12:17:57 as
	Global Gene Expression Analysis of Reactive Stroma in Prostate Cancer [My Copy] Clin Cancer Res, Vol. 15, No. 12. (15 June 2009), pp. 3979-3989. by Olga Dakhova, Mustafa Ozen, Chad J. Creighton, et al.Rile Li, Gustavo Ayala, David Rowley, Michael Ittmann posted to cytoscape interactome by epigenetics on 2009-06-18 12:15:58 as
	Sexually dimorphic gene expression in the chick brain before gonadal differentiation [My Copy] Poult Sci, Vol. 88, No. 5. (1 May 2009), pp. 1003-1015. by S. I. Lee, W. K. Lee, J. H. Shin, et al.B. K. Han, S. Moon, S. Cho, T. Park, H. Kim, J. Y. Han posted to cytoscape interactome by epigenetics on 2009-06-18 12:13:21 as
	Dynamic reprogramming of transcription factors to and from the subtelomere. [My Copy] Genome research, Vol. 19, No. 6. (16 June 2009), pp. 1014-1025. by H. C. Mak, L. Pillus, T. Ideker posted to cytoscape interactome by epigenetics on 2009-06-18 12:08:53 as along with 5 people and 1 group megraw HawkinsJohnC idonaldson JustinCrocker maximilianh BenosLab
	Dynamic and complex transcription factor binding during an inducible response in yeast [My Copy] Genes & Development, Vol. 23, No. 11. (1 June 2009), pp. 1351-1363. by Li Ni, Can Bruce, Christopher Hart, et al.Justine Leigh-Bell, Daniel Gelperin, Lara Umansky, Mark B. Gerstein, Michael Snyder posted to cytoscape interactome by epigenetics on 2009-06-18 12:05:59 as along with 1 person roys
	KEGG Atlas mapping for global analysis of metabolic pathways. [My Copy] Nucleic acids research, Vol. 36, No. Web Server issue. (1 July 2008), gkn282. by Shujiro Okuda, Takuji Yamada, Masami Hamajima, et al.Masumi Itoh, Toshiaki Katayama, Peer Bork, Susumu Goto, Minoru Kanehisa posted to bioinformatics gsc005 by epigenetics on 2009-04-08 17:36:31 as along with 6 people Thaverkamp chica michaelbarton reyez renatomilani guhjy
	Nitric oxide deficiency determines global chromatin changes in Duchenne muscular dystrophy [My Copy] FASEB J. (2 April 2009), fj.08-115618. by Claudia Colussi, Aymone Gurtner, Jessica Rosati, et al.Barbara Illi, Gianluca Ragone, Giulia Piaggio, Maurizio Moggio, Costanza Lamperti, Grazia D'Angelo, Emilio Clementi, Giulia Minetti, Chiara Mozzetta, Annalisa Antonini, Maurizio C. Capogrossi, Pier L. Puri, Carlo Gaetano posted to chromatin disease epigenetics by epigenetics on 2009-04-05 11:06:09 as
	A gene network for navigating the literature. [My Copy] Nat Genet, Vol. 36, No. 7. (July 2004) by R. Hoffmann, A. Valencia posted to bioinformatics gsc005 by epigenetics on 2009-03-30 16:12:42 as along with 10 people and 2 groups guhjy aalibes yas benny caporaso minostro adoms frohike Borelli beete T_lab biomedical-nlp
	Analysis of the platypus genome suggests a transposon origin for mammalian imprinting [My Copy] Genome Biology, Vol. 10 (02 January 2009), R1. by Andrew, Marilyn B. Renfree posted to epigenetics evolution imprinting transposon by epigenetics on 2009-01-14 15:01:50 as along with 5 people and 1 group djkt inesdesantiago bpcusack rschulz PaulFlook Imprinting
	Drosophila Stem Cells Share a Common Requirement for the Histone H2B Ubiquitin Protease Scrawny [My Copy] Science, Vol. 323, No. 5911. (9 January 2009), pp. 248-251. by Michael Buszczak, Shelley Paterno, Allan C. Spradling posted to chromatin epigenetics histone by epigenetics on 2009-01-14 09:18:58 as along with 1 person wangjinglong
	The lysine demethylase LSD1 (KDM1) is required for maintenance of global DNA methylation. [My Copy] Nature genetics, Vol. 41, No. 1. (21 January 2009), pp. 125-129. by Jing Wang, Sarah Hevi, Julia K. Kurash, et al.Hong Lei, Frédérique Gay, Jeffrey Bajko, Hui Su, Weitao Sun, Hua Chang, Guoliang Xu, François Gaudet, En Li, Taiping Chen posted to epigenetics epigenome methylation methylome by epigenetics on 2009-01-09 12:08:31 as along with 2 people ashkelon13 guhjy
	A position effect on the heritability of epigenetic silencing. [My Copy] PLoS genetics, Vol. 4, No. 10. (10 October 2008), e1000216. by J. Singh, M. Freeling, D. Lisch posted to chromatin epigenetics inheritance plant by epigenetics on 2008-12-04 15:45:21 as along with 5 people galka8_diploma jiayi369 madreach inesdesantiago djkt
	Reduced representation bisulfite sequencing for comparative high-resolution DNA methylation analysis [My Copy] Nucleic Acids Research, Vol. 33, No. 18. (2005), pp. 5868-5877. by Alexander Meissner, Andreas Gnirke, George W. Bell, Bernard Ramsahoye, Eric S. Lander, Rudolf Jaenisch posted to epigenetics epigenome methods methylation by epigenetics on 2008-08-21 13:36:30 as along with 1 person hkuhn
	A comprehensive library of histone mutants identifies nucleosomal residues required for H3K4 methylation. [My Copy] Nature structural & molecular biology (11 July 2008) by Shima Nakanishi, Brian W W. Sanderson, Kym M M. Delventhal, William D D. Bradford, Karen Staehling-Hampton, Ali Shilatifard posted to chromatin epigenetics histone methylation by epigenetics on 2008-08-01 13:53:22 as along with 1 person ghattem
	DNA methylation analysis by digital bisulfite genomic sequencing and digital MethyLight. [My Copy] Nucleic acids research (15 July 2008) by Daniel J J. Weisenberger, Binh N N. Trinh, Mihaela Campan, et al.Shikhar Sharma, Tiffany I I. Long, Suchitra Ananthnarayan, Gangning Liang, Francisco J J. Esteva, Gabriel N N. Hortobagyi, Frank McCormick, Peter A A. Jones, Peter W W. Laird posted to epigenetics methods methylation by epigenetics on 2008-08-01 13:52:43 as along with 1 person misonneh
	Requirement of histone deacetylase1 (HDAC1) in signal transducer and activator of transcription 3 (STAT3) nucleocytoplasmic distribution [My Copy] Nucl. Acids Res., Vol. 36, No. 13. (1 August 2008), pp. 4510-4520. by Sutapa Ray, Chang Lee, Tieying Hou, Istvan Boldogh, Allan R. Brasier posted to chromatin epigenetics hdacs histone signalling by epigenetics on 2008-08-01 13:50:37 as along with 1 person mapplab
	High mobility group protein B1 enhances DNA repair and chromatin modification after DNA damage. [My Copy] Proceedings of the National Academy of Sciences of the United States of America, Vol. 105, No. 30. (29 July 2008), pp. 10320-10325. by S. S. Lange, D. L. Mitchell, K. M. Vasquez posted to chromatin epigenetics repair by epigenetics on 2008-08-01 13:49:01 as
	An HMM approach to genome-wide identification of differential histone modification sites from ChIP-seq data [My Copy] Bioinformatics, Vol. 24, No. 20. (15 October 2008), pp. 2344-2349. by Han Xu, Chia-Lin Wei, Feng Lin, Wing-Kin Sung posted to bioinformatics chromatin epigenetics epigenome histone by epigenetics on 2008-08-01 13:46:06 as along with 8 people darian mkiyer tonamswish ewilban1 rschulz polivares caseybrown djkt
	Polydactyly in Mice Lacking HDAC9/HDRP [My Copy] Experimental Biology and Medicine, Vol. 233, No. 8. (1 August 2008), pp. 980-988. by Brad E. Morrison, Santosh R. D'Mello posted to development embryology epigenetics hdacs histone signalling by epigenetics on 2008-07-29 14:03:08 as
	The effect of the internucleosomal interaction on the folding of the chromatin fiber [My Copy] Biophys. J. (25 July 2008), biophysj.107.120543. by Rene Stehr, Nick Kepper, Karsten Rippe, Gero Wedemann posted to biophysics chromatin epigenetics modeling by epigenetics on 2008-07-29 14:01:49 as
	Global Mapping of DNA Methylation in Mouse Promoters Reveals Epigenetic Reprogramming of Pluripotency Genes [My Copy] PLoS Genet, Vol. 4, No. 6. (27 June 2008), e1000116. by Cassandra R. Farthing, Gabriella Ficz, Ray K. Ng, et al.Chun-Fung Chan, Simon Andrews, Wendy Dean, Myriam Hemberger, Wolf Reik posted to development embryology epigenetics imprinting methylation methylome reproduction by epigenetics on 2008-07-29 13:53:38 as along with 5 people rschulz MSchipper Schmidtc djkt inesdesantiago
	DNA methyltransferase loading, but not de novo methylation, is an oocyte-autonomous process stimulated by SCF signalling. [My Copy] Developmental biology (25 June 2008) by Diane J J. Lees-Murdock, Ho-Tak T. Lau, Diego H H. Castrillon, Massimo De Felici, Colum P P. Walsh posted to development epigenetics imprinting methylation reproduction signalling by epigenetics on 2008-07-23 09:25:20 as along with 1 person rschulz
	Prader-Willi phenotype caused by paternal deficiency for the HBII-85 C/D box small nucleolar RNA cluster [My Copy] Nature Genetics, Vol. 40, No. 6. (25 May 2008), pp. 719-721. by Trilochan Sahoo, Daniela D. Gaudio, Jennifer R. German, et al.Marwan Shinawi, Sarika U. Peters, Richard E. Person, Adolfo Garnica, Sau W. Cheung, Arthur L. Beaudet posted to disease epigenetics imprinting inheritance rna by epigenetics on 2008-06-16 14:24:58 as
	MeCP2, a Key Contributor to Neurological Disease, Activates and Represses Transcription [My Copy] Science, Vol. 320, No. 5880. (30 May 2008), pp. 1224-1229. by Maria Chahrour, Sung Y. Jung, Chad Shaw, et al.Xiaobo Zhou, Stephen T. Wong, Jun Qin, Huda Y. Zoghbi posted to epigenetics methylation neuroscience by epigenetics on 2008-05-30 14:23:38 as along with 1 person giovanni
	Structural mechanism of demethylation and inactivation of protein phosphatase 2A. [My Copy] Cell, Vol. 133, No. 1. (4 April 2008), pp. 154-163. by Y. Xing, Z. Li, Y. Chen, J. B. Stock, P. D. Jeffrey, Y. Shi posted to epigenetics methylation signalling by epigenetics on 2008-05-21 15:38:35 as along with 1 person tibbitts
	Carcinogenesis and the hypothesis of phylogenetic reversion. [My Copy] Analytical and quantitative cytology and histology / the International Academy of Cytology [and] American Society of Cytology, Vol. 28, No. 5. (October 2006), pp. 243-252. by P. H. Bartels, J. Ranger-Moore, D. Alberts, L. Hess, M. Scarpelli, R. Montironi posted to cancer epigenetics evolution hypothesis by epigenetics on 2008-04-30 20:58:59 as
	Histone acetylation and methylation at sites initiating divergent polycistronic transcription in trypanosoma cruzi [My Copy] J. Biol. Chem. (9 April 2008), M802081200. by Patricia Respuela, Marcela Ferella, Alvaro Rada-Iglesias, Lena Aslund posted to chromatin epigenetics evolution histone methylation by epigenetics on 2008-04-25 15:48:49 as
	A brief history of RNAi: the silence of the genes. [My Copy] FASEB J, Vol. 20, No. 9. (July 2006), pp. 1293-1299. by G. L. Sen, H. M. Blau posted to rna by epigenetics on 2008-04-24 14:54:15 as along with 9 people and 2 groups heliopais bala tkershaw tardigrade Hosna mgantier Fritz adalb_decode srfairclough neurolit DictyosteliumGroup
	The regulation of genes and genomes by small RNAs. [My Copy] Development (4 April 2007) by Victor Ambros, Xuemei Chen posted to rna by epigenetics on 2008-04-24 14:53:36 as along with 5 people and 4 groups bala tardigrade andersbj dchughes heliopais microRNA G4ID DictyosteliumGroup Genetics-of-Gambling
	RNA Interference Guides Histone Modification during the S Phase of Chromosomal Replication. [My Copy] Current biology : CB, Vol. 18, No. 7. (8 April 2008), pp. 490-495. by A. Kloc, M. Zaratiegui, E. Nora, R. Martienssen posted to chromatin epigenetics histone rna by epigenetics on 2008-04-23 09:38:15 as along with 2 people micromassive MSchipper
	Histone lysine methyltransferases and demethylases in Plasmodium falciparum. [My Copy] International journal for parasitology (26 January 2008) by Liwang Cui, Qi Fan, Long Cui, Jun Miao posted to chromatin crps epigenetics histone methylation parasite protist by epigenetics on 2008-04-10 23:14:48 as
	A Class II Histone Deacetylase Acts on Newly Synthesized Histones in Tetrahymena [My Copy] Eukaryotic Cell, Vol. 7, No. 3. (1 March 2008), pp. 471-482. by Joshua J. Smith, Sharon E. Torigoe, Julia Maxson, Lisa C. Fish, Emily A. Wiley posted to chromatin epigenetics evolution hdacs histone protist by epigenetics on 2008-04-10 23:12:28 as
	Is folic acid good for everyone? [My Copy] Am J Clin Nutr, Vol. 87, No. 3. (1 March 2008), pp. 517-533. by David A. Smith, Young-In Kim, Helga Refsum posted to epigenetics hypothesis nutrition reviews by epigenetics on 2008-04-10 23:11:22 as along with 2 people jmiles guhjy
	Arsenite alters global histone H3 methylation [My Copy] Carcinogenesis (4 March 2008), bgn063. by Xue Zhou, Hong Sun, Thomas P. Ellen, Haobin Chen, Max Costa posted to chromatin epigenetics histone toxicology by epigenetics on 2008-04-10 23:09:32 as
	Epigenetics: what is it and why is it important to mental disease? [My Copy] Br Med Bull, Vol. 85, No. 1. (1 March 2008), pp. 35-45. by Anthony R. Isles, Lawrence S. Wilkinson posted to behavior epigenetics neuroscience reviews by epigenetics on 2008-04-10 23:08:23 as along with 1 person stefanjanusz
	X-inactivation in female human embryonic stem cells is in a nonrandom pattern and prone to epigenetic alterations. [My Copy] Proc Natl Acad Sci U S A (13 March 2008) by Yin Shen, Youko Matsuno, Shaun D D. Fouse, et al.Nagesh Rao, Sierra Root, Renhe Xu, Matteo Pellegrini, Arthur D D. Riggs, Guoping Fan posted to epigenetics imprinting reproduction by epigenetics on 2008-04-10 23:05:59 as along with 2 people sebastien_vigneau inesdesantiago
	Bisulfite sequencing Data Presentation and Compilation (BDPC) web server--a useful tool for DNA methylation analysis [My Copy] Nucl. Acids Res., Vol. 36, No. 5. (1 March 2008), e34. by Christian Rohde, Yingying Zhang, Tomasz P. Jurkowski, Heinrich Stamerjohanns, Richard Reinhardt, Albert Jeltsch posted to bioinformatics epigenetics methylation by epigenetics on 2008-04-10 23:03:18 as along with 1 person guhjy
	Sensitive Melting Analysis after Real Time - Methylation Specific PCR (SMART-MSP): high-throughput and probe-free quantitative DNA methylation detection [My Copy] Nucl. Acids Res. (15 March 2008), gkn113. by Lasse S. Kristensen, Thomas Mikeska, Michael Krypuy, Alexander Dobrovic posted to epigenetics methods methylation by epigenetics on 2008-04-10 22:58:24 as along with 1 person guhjy
	An analytical pipeline for genomic representations used for cytosine methylation studies [My Copy] Bioinformatics (18 March 2008), btn096. by Reid F. Thompson, Mark Reimers, Batbayar Khulan, et al.Mathieu Gissot, Todd A. Richmond, Quan Chen, Xin Zheng, Kami Kim, John M. Greally posted to bioinformatics epigenetics epigenome methylation methylome by epigenetics on 2008-04-10 22:56:08 as along with 1 person renatomilani
	Histone deacetylase 3 localizes to the mitotic spindle and is required for kinetochore-microtubule attachment [My Copy] Proceedings of the National Academy of Sciences, Vol. 105, No. 11. (18 March 2008), pp. 4179-4184. by Sumiyasu Ishii, Yasuhiro Kurasawa, Jiemin Wong, Li-Yuan Yu-Lee posted to chromatin division epigenetics hdacs histone by epigenetics on 2008-04-10 22:55:39 as along with 1 person mclarenv
	Efficient gene delivery using reconstituted chromatin enhanced for nuclear targeting [My Copy] FASEB J. (20 March 2008), fj.07-099911. by Kylie M. Wagstaff, Jun Y. Fan, Michelle A. De Jesus, David J. Tremethick, David A. Jans posted to methods by epigenetics on 2008-04-10 22:53:34 as
	Involvement of Arabidopsis HOS15 in histone deacetylation and cold tolerance [My Copy] Proceedings of the National Academy of Sciences, Vol. 105, No. 12. (25 March 2008), pp. 4945-4950. by Jianhua Zhu, Jae C. Jeong, Yanmei Zhu, et al.Irina Sokolchik, Saori Miyazaki, Jian-Kang Zhu, Paul M. Hasegawa, Hans J. Bohnert, Huazhong Shi, Dae-Jin Yun, Ray A. Bressan posted to chromatin hdacs histone plant by epigenetics on 2008-04-10 22:52:16 as

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evolution	50
methylation	29
retrogenes	21
human	20
ctcf	18
features	17
sequence	17
imprinting	16
review	15
cohesin	14
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eed	1
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herv	1
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