coldmeadow's library 84 articles Export

	Finishing the euchromatic sequence of the human genome [My Copy] Nature, Vol. 431, No. 7011. (2004), 931--945. by Alireza A. Zahra Abdellah posted to segmentation mutation by coldmeadow on 2009-10-08 01:11:34 as
	Mutation rates differ among regions of the mammalian genome [My Copy] Nature, Vol. 337 (1989), 283--285. by K. H. Wolfe, P. M. Sharp, W. H. Li posted to segmentation mutation by coldmeadow on 2009-10-08 01:11:34 as
	Is the synonymous substitution rate in mammals gene-specific? [My Copy] Molecular Biology and Evolution, Vol. 19, No. 8. (2002), 1395-1398. by E. J. B. Williams, L. D. Hurst posted to segmentation mutation by coldmeadow on 2009-10-08 01:11:34 as
	Initial sequencing and comparative analysis of the mouse genome [My Copy] Nature, Vol. 420, No. 6915. (2002), 520--562. by R. H. Waterston, K. Lindblad-Toh, E. Birney, et al.J. Rogers, J. F. Abril, P. Agarwal, R. Agarwala, R. Ainscough, M. Alexandersson, P. An, Others posted to segmentation mutation by coldmeadow on 2009-10-08 01:11:34 as
	The relationship between non-protein-coding DNA and eukaryotic complexity [My Copy] Bioessays, Vol. 29, No. 3. (2007), 288-299. by R. J. Taft, M. Pheasant, J. S. Mattick posted to segmentation mutation by coldmeadow on 2009-10-08 01:11:34 as
	Trade-offs in detecting evolutionarily constrained sequence by comparative genomics [My Copy] Annu. Rev. Genomics Hum. Genet, Vol. 6 (2005), 143--164. by E. A. Stone, G. M. Cooper, A. Sidow posted to segmentation mutation by coldmeadow on 2009-10-08 01:11:34 as
	Deterministic mutation rate variation in the human genome [My Copy] Genome Research, Vol. 12, No. 9. (2002), 1350-1356. by N. G. C. Smith, M. T. Webster, H. Ellegren posted to segmentation mutation by coldmeadow on 2009-10-08 01:11:34 as
	Multiple comparisons of log-likelihoods with applications to phylogenetic inference [My Copy] Molecular Biology and Evolution, Vol. 16, No. 8. (1999), 1114. by H. Shimodaira, M. Hasegawa posted to segmentation mutation by coldmeadow on 2009-10-08 01:11:34 as
	Estimating the dimension of a model [My Copy] Annals of Statistics, Vol. 6, No. 2. (1978), 461--464. by G. Schwarz posted to segmentation mutation by coldmeadow on 2009-10-08 01:11:34 as
	NCBI reference sequences (RefSeq): a curated non-redundant sequence database of genomes, transcripts and proteins. [My Copy] Nucleic Acids Research, Vol. 35 (2007), D61-D65. by K. D. Pruitt, T. Tatusova, D. R. Maglott posted to segmentation mutation by coldmeadow on 2009-10-08 01:11:34 as
	Raising the estimate of functional human sequences [My Copy] Genome Research, Vol. 17, No. 9. (2007), 1245--1253. by M. Pheasant, J. S. Mattick posted to segmentation mutation by coldmeadow on 2009-10-08 01:11:33 as
	Genetic evidence for complex speciation of humans and chimpanzees [My Copy] Nature, Vol. 441, No. 7097. (2006), 1103-1108. by N. Patterson, D. J. Richter, S. Gnerre, E. S. Lander, D. Reich posted to segmentation mutation by coldmeadow on 2009-10-08 01:11:31 as
	Rapid evolution of noncoding RNAs: lack of conservation does not mean lack of function [My Copy] Trends in Genetics, Vol. 22, No. 1. (2006), 1--5. by K. C. Pang, M. C. Frith, J. S. Mattick posted to segmentation mutation by coldmeadow on 2009-10-08 01:11:31 as
	Assessment of compositional heterogeneity within and between eukaryotic genomes [My Copy] Genome Research, Vol. 10, No. 12. (2000), 1986-1995. by A. Nekrutenko, W. H. Li posted to segmentation mutation by coldmeadow on 2009-10-08 01:11:31 as
	Dual multiple change-point model leads to more accurate recombination detection [My Copy] Bioinformatics, Vol. 21, No. 13. (2005), 3034-3042. by V. N. Minin, K. S. Dorman, F. Fang, M. A. Suchard posted to segmentation mutation by coldmeadow on 2009-10-08 01:11:31 as
	A new paradigm for developmental biology [My Copy] Journal of Experimental Biology, Vol. 210, No. 9. (2007), 1526-1547. by J. S. Mattick posted to segmentation mutation by coldmeadow on 2009-10-08 01:11:31 as
	Genome-wide identification of human functional DNA using a neutral indel model [My Copy] PLoS Comput Biol, Vol. 2, No. 1. (2006), e5. by G. Lunter, C. P. Ponting, J. Hein posted to segmentation mutation by coldmeadow on 2009-10-08 01:11:31 as
	Genome sequence, comparative analysis and haplotype structure of the domestic dog [My Copy] Nature, Vol. 438, No. 7069. (2005), 803--819. by Kerstin Lindblad-Toh, Claire M. Wade, Tarjei S. Mikkelsen, et al.Elinor K. Karlsson, David B. Jaffe, Michael Kamal, Michele Clamp, Jean L. Chang, Edward J. Kulbokas, Michael C. Zody, Evan Mauceli, Xiaohui Xie, Matthew Breen, Robert K. Wayne, Elaine A. Ostrander, Chris P. Ponting, Francis Galibert, Douglas R. Smith, Pieter J. deJong, Ewen Kirkness, Pablo Alvarez, Tara Biagi, William Brockman, Jonathan Butler, Chee-Wye Chin, April Cook, James Cuff, Mark J. Daly, David DeCaprio, Sante Gnerre, Manfred Grabherr, Manolis Kellis, Michael Kleber, Carolyne Bardeleben, Leo Goodstadt, Andreas Heger, Christophe Hitte, Lisa Kim, Klaus-Peter Koepfli, Heidi G. Parker, John P. Pollinger, Stephen M. J. Searle, Nathan B. Sutter, Rachael Thomas, Caleb Webber, Eric S. Lander posted to segmentation mutation by coldmeadow on 2009-10-08 01:11:31 as
	A Generalized Markov Sampler [My Copy] Methodology and Computing in Applied Probability, Vol. 6, No. 1. (2004), 29-53. by J. M. Keith, D. P. Kroese, D. Bryant posted to segmentation mutation by coldmeadow on 2009-10-08 01:11:31 as
	Delineating Slowly and Rapidly Evolving Fractions of the Drosophila Genome [My Copy] Journal of Computational Biology, Vol. 15, No. 4. (2008), 407--430. by J. M. Keith, P. Adams, S. Stephen, J. S. Mattick posted to segmentation mutation by coldmeadow on 2009-10-08 01:11:31 as
	Algorithms for sequence analysis via mutagenesis [My Copy] Bioinformatics, Vol. 20, No. 15. (2004), 2401-2410. by J. M. Keith, P. Adams, D. Bryant, D. A. E. Cochran, G. H. Lala, K. R. Mitchelson posted to segmentation mutation by coldmeadow on 2009-10-08 01:11:31 as
	Segmenting Eukaryotic Genomes with the Generalized Gibbs Sampler [My Copy] Journal of Computational Biology, Vol. 13, No. 7. (2006), 1369--1383. by J. M. Keith posted to segmentation mutation by coldmeadow on 2009-10-08 01:11:31 as
	The UCSC Genome Browser Database: 2008 update [My Copy] Nucleic Acids Research, Vol. 36, No. Database issue. (2008), D773. by D. Karolchik, R. M. Kuhn, R. Baertsch, et al.G. P. Barber, H. Clawson, M. Diekhans, B. Giardine, R. A. Harte, A. S. Hinrichs, F. Hsu, Others posted to segmentation mutation by coldmeadow on 2009-10-08 01:11:30 as
	Molecular paleontology of transposable elements in the Drosophila melanogaster genome [My Copy] Proceedings of the National Academy of Sciences, Vol. 100, No. 11. (2003), 6569-6574. by V. V. Kapitonov, J. Jurka posted to segmentation mutation by coldmeadow on 2009-10-08 01:11:30 as
	Covariation of GC content and the silent site substitution rate in rodents: implications for methodology and for the evolution of isochores [My Copy] Gene, Vol. 261, No. 1. (2000), 107-114. by L. D. Hurst, E. J. B. Williams posted to segmentation mutation by coldmeadow on 2009-10-08 01:11:30 as
	Genomic relationships and speciation times of human, chimpanzee, and gorilla inferred from a coalescent hidden Markov model [My Copy] PLoS Genet, Vol. 3, No. 2. (2007), e7. by A. Hobolth, O. F. Christensen, T. Mailund, M. H. Schierup posted to segmentation mutation by coldmeadow on 2009-10-08 01:11:30 as
	Covariation in frequencies of substitution, deletion, transposition, and recombination during eutherian evolution [My Copy] Genome Research, Vol. 13, No. 1. (2003), 13-26. by R. C. Hardison, K. M. Roskin, S. Yang, et al.M. Diekhans, W. J. Kent, R. Weber, L. Elnitski, J. Li, M. O'Connor, D. Kolbe posted to segmentation mutation by coldmeadow on 2009-10-08 01:11:30 as
	Ubiquitous selective constraints in the Drosophila genome revealed by a genome-wide interspecies comparison [My Copy] Genome Research, Vol. 16, No. 7. (2006), 875--884. by D. L. Halligan, P. D. Keightley posted to segmentation mutation by coldmeadow on 2009-10-08 01:11:30 as
	Patterns of Evolutionary Constraints in Intronic and Intergenic DNA of Drosophila [My Copy] Vol. 14, 273-279. by D. L. Halligan, A. Eyre-Walker, P. Andolfatto, Keightley posted to segmentation mutation by coldmeadow on 2009-10-08 01:11:30 as
	Assessment of Compositional Heterogeneity Within and Between [My Copy] by E. Genomes posted to segmentation mutation by coldmeadow on 2009-10-08 01:11:30 as
	Toward defining the course of evolution: minimum change for a specific tree topology [My Copy] Syst Zool, Vol. 20, No. 4. (1971), 406--416. by W. M. Fitch posted to segmentation mutation by coldmeadow on 2009-10-08 01:11:30 as
	PHYLIP (phylogeny inference package), version 3.57 c [My Copy] Seattle: University of Washington (1995) by J. Felsenstein posted to segmentation mutation by coldmeadow on 2009-10-08 01:11:30 as
	The regulated retrotransposon transcriptome of mammalian cells [My Copy] Nature genetics, Vol. 41, No. 5. (2009), 563-571. by G. J. Faulkner, Y. Kimura, C. O. Daub, et al.S. Wani, C. Plessy, K. M. Irvine, K. Schroder, N. Cloonan, A. L. Steptoe, T. Lassmann posted to segmentation mutation by coldmeadow on 2009-10-08 01:11:30 as
	Mutations of different molecular origins exhibit contrasting patterns of regional substitution rate variation [My Copy] PLoS Computational Biology, Vol. 4, No. 2. (2008), PLoS Computational Biology. by N. Elango, S. H. Kim, Program, E. Vigoda, S. V. Yi posted to segmentation mutation by coldmeadow on 2009-10-08 01:11:30 as
	Genes on human chromosome 19 show extreme divergence from the mouse orthologs and a high GC content [My Copy] Nucleic Acids Research, Vol. 30, No. 8. (2002), 1751--1756. by J. Castresana posted to segmentation mutation by coldmeadow on 2009-10-08 01:11:30 as
	Bayes and Empirical Bayes Methods for Data Analysis [My Copy] (2000) by B. P. Carlin, T. A. Louis posted to segmentation mutation by coldmeadow on 2009-10-08 01:11:30 as
	Identification and analysis of functional elements in 1% of the human genome by the ENCODE pilot project [My Copy] Nature, Vol. 447, No. 7146. (2007), 799--816. by E. Birney, J. A. Stamatoyannopoulos, A. Dutta, et al.R. Guigó, T. R. Gingeras, E. H. Margulies, Z. Weng, M. Snyder, E. T. Dermitzakis, J. A. Stamatoyannopoulos, Others posted to segmentation mutation by coldmeadow on 2009-10-08 01:11:27 as
	Analysis of Sequence Conservation at Nucleotide Resolution [My Copy] PLoS Comput Biol, Vol. 3, No. 12. (2007), e254. by S. Asthana, M. Roytberg, J. Stamatoyannopoulos, S. Sunyaev, M. Brudno posted to segmentation mutation by coldmeadow on 2009-10-08 01:11:27 as
	Widely distributed noncoding purifying selection in the human genome [My Copy] Proceedings of the National Academy of Sciences, Vol. 104, No. 30. (2007), 12410--12415. by S. Asthana, W. S. Noble, G. Kryukov, C. E. Grant, S. Sunyaev, J. A. Stamatoyannopoulos posted to segmentation mutation by coldmeadow on 2009-10-08 01:11:27 as
	Substantial regional variation in substitution rates in the human genome: importance of GC content, gene density, and telomere-specific effects [My Copy] Journal of molecular evolution, Vol. 60, No. 6. (2005), 748-763. by P. F. Arndt, T. Hwa, D. A. Petrov posted to segmentation mutation by coldmeadow on 2009-10-08 01:11:27 as
	REVCOM: a robust Bayesian method for evolutionary rate estimation [My Copy] Bioinformatics, Vol. 21, No. 10. (15 May 2005), pp. 2315-2321. by Andrew J. Bordner, Ruben Abagyan posted to multiple_sequence_alignment by coldmeadow on 2009-09-28 01:00:58 as along with 1 person BioNica
	Genomewide Comparative Analysis of the Highly Abundant Transposable Element DINE-1 Suggests a Recent Transpositional Burst in Drosophila yakuba [My Copy] Genetics, Vol. 173, No. 1. (1 May 2006), pp. 189-196. by Hsiao-Pei Yang, Tzu-Ling Hung, Tzung-Lin You, Tzung-Han Yang posted to dine-1 by coldmeadow on 2009-09-16 01:45:17 as
	Motif Discovery Through Predictive Modeling of Gene Regulation [My Copy] Research in Computational Molecular Biology (2005), pp. 538-552. by Manuel Middendorf, Anshul Kundaje, Mihir Shah, Yoav Freund, Chris H. Wiggins, Christina Leslie posted to motif by coldmeadow on 2009-08-14 04:51:44 as along with 1 person Dulce
	Using GOstats to test gene lists for GO term association. [My Copy] Bioinformatics, Vol. 23, No. 2. (15 January 2007), pp. 257-258. by S. Falcon, R. Gentleman posted to go by coldmeadow on 2009-08-14 04:49:25 as along with 1 person florianleitner
	Fast Construction of Generalized Suffix Trees Over a Very Large Alphabet [My Copy] Computing and Combinatorics (2003), pp. 284-293. by Zhixiang Chen, Richard Fowler, Ada W. Fu, Chunyue Wang posted to motif by coldmeadow on 2009-08-14 04:30:05 as along with 1 person myui
	Algorithms for extracting structured motifs using a suffix tree with an application to promoter and regulatory site consensus identification. [My Copy] Journal of computational biology : a journal of computational molecular cell biology, Vol. 7, No. 3-4. (2000), pp. 345-362. by L. Marsan, M. F. Sagot posted to motif by coldmeadow on 2009-08-11 03:06:15 as along with 2 people wowalz dquest
	14-3-3s are DNA-replication proteins. [My Copy] Biochemical Society transactions, Vol. 30, No. 4. (August 2002), pp. 397-401. by M. Zannis-Hadjopoulos, O. Novac, D. Alvarez, G. B. Price posted to utr by coldmeadow on 2009-08-04 07:44:19 as along with 3 people nns1987 roboonya guhjy
	DPP signaling controls development of the lamina glia required for retinal axon targeting in the visual system of Drosophila. [My Copy] Development (Cambridge, England), Vol. 132, No. 20. (October 2005), pp. 4587-4598. by Shoko Yoshida, Laurent Soustelle, Angela Giangrande, et al.Daiki Umetsu, Satoshi Murakami, Tetsuo Yasugi, Takeshi Awasaki, Kei Ito, Makoto Sato, Tetsuya Tabata posted to gcm by coldmeadow on 2009-08-04 05:36:33 as along with 2 people jonathanmkeith larios
	Transcriptional control of glial cell development in Drosophila [My Copy] Developmental Biology, Vol. 278, No. 2. (15 February 2005), pp. 265-273. by Bradley W. Jones posted to gcm by coldmeadow on 2009-08-04 03:30:23 as along with 1 person jonathanmkeith
	Transcriptional control of glial and blood cell development in Drosophila: cis-regulatory elements of glial cells missing. [My Copy] Developmental biology, Vol. 266, No. 2. (15 February 2004), pp. 374-387. by Bradley W. Jones, Matthew Abeysekera, Jolanta Galinska, Ethel M. Jolicoeur posted to gcm by coldmeadow on 2009-08-04 03:28:36 as

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mutation	47
segmentation	40
gcm	13
motif	12
mirna	2
age-at-onset	1
alignment	1
appendicitis	1
bioinformatics	1
dine-1	1
go	1
linkage	1
multiple_sequence_alignment	1
ortholog	1
phylogenetic	1
reference	1
selection	1
smoking	1
utr	1

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