csgillespie's library 34 articles Export

	Accurate stochastic simulation via the step anticipation tau-leaping (SAL) algorithm. [My Copy] Journal of computational biology : a journal of computational molecular cell biology, Vol. 16, No. 9. (September 2009), pp. 1195-1208. by Mary Sehl, Alexander V. Alekseyenko, Kenneth L. Lange posted to no-tag by csgillespie on 2009-09-26 23:06:20 as
	MicroarrayDesigner: an online search tool and repository for near-optimal microarray experimental designs [My Copy] BMC Bioinformatics, Vol. 10, No. 1. (22 September 2009), 304. by Ahmet Sacan, Nilgun Ferhatosmanoglu, Hakan Ferhatosmanoglu posted to no-tag by csgillespie on 2009-09-26 11:09:23 as along with 5 people and 1 group jforment rdiaz Zephyrus daforerog nuin Bioinformatics Core Service
	The Mathematics of Internet Congestion Control (Systems & Control: Foundations & Applications) [My Copy] (12 December 2003) by Rayadurgam Srikant posted to queue by csgillespie on 2009-08-24 17:26:43 as
	Optimal Combination of Sampled Network Measurements [My Copy] IMC '05, 2005 Internet Measurement Conference, pp. 91-104. by Nick Duffield, Carsten Lund, Mikkel Thorup posted to queue by csgillespie on 2009-08-24 17:07:52 as along with 1 person mfisk
	Measurement of packet loss probability by optimal design of packet probing experiments [My Copy] Communications, IET In Communications, IET, Vol. 3, No. 6. (2009), pp. 979-991. by B. M. Parker, S. G. Gilmour, J. Schormans posted to queue by csgillespie on 2009-08-24 17:03:55 as
	Fundamental bounds on the accuracy of network performance measurements [My Copy] In SIGMETRICS '05: Proceedings of the 2005 ACM SIGMETRICS international conference on Measurement and modeling of computer systems, Vol. 33, No. 1. (June 2005), pp. 253-264. by Matthew Roughan posted to queue by csgillespie on 2009-08-24 16:56:14 as along with 2 people and 1 group ianwelch rewaskar unc_cs_net
	MACAT--microarray chromosome analysis tool. [My Copy] Bioinformatics, Vol. 21, No. 9. (1 May 2005), pp. 2112-2113. by J. Toedling, S. Schmeier, M. Heinig, B. Georgi, S. Roepcke posted to cgharray nina by csgillespie on 2009-04-28 17:59:28 as along with 1 person rdiaz
	Integration of Gene Dosage and Gene Expression in Non-Small Cell Lung Cancer, Identification of HSP90 as Potential Target [My Copy] PLoS ONE, Vol. 3, No. 3. (5 March 2008), e0001722. by Mariëlle I. Gallegos Ruiz, Karijn Floor, Paul Roepman, et al.José A. Rodriguez, Gerrit A. Meijer, Wolter J. Mooi, Ewa Jassem, Jacek Niklinski, Thomas Muley, Nico van Zandwijk, Egbert F. Smit, Kristin Beebe, Len Neckers, Bauke Ylstra, Giuseppe Giaccone posted to cgharray nina by csgillespie on 2009-04-28 17:59:16 as
	ACE-it: a tool for genome-wide integration of gene dosage and RNA expression data. [My Copy] Bioinformatics (Oxford, England), Vol. 22, No. 15. (1 August 2006), pp. 1919-1920. by W. N. van Wieringen, J. A. Belien, S. J. Vosse, E. M. Achame, B. Ylstra posted to cgharray nina by csgillespie on 2009-04-28 17:59:12 as along with 1 person jfr
	Integrated analysis of expression and genome alteration reveals putative amplified target genes in esophageal cancer. [My Copy] Oncol Rep, Vol. 18, No. 2. (August 2007), pp. 465-472. by T. Sugimoto, M. Arai, H. Shimada, A. Hata, N. Seki posted to cgharray nina by csgillespie on 2009-04-28 17:58:59 as along with 1 person lh1
	A genome wide analysis of the response to uncapped telomeres in budding yeast reveals a novel role for the NAD+ biosynthetic gene BNA2 in chromosome end protection [My Copy] Genome Biology, Vol. 9 (01 October 2008), R146. by Amanda Greenall, Guiyuan Lei, Daniel C. Swan, et al.Katherine James, Liming Wang, Heiko Peters, Anil Wipat, Darren J. Wilkinson, David Lydall posted to no-tag by csgillespie on 2009-02-04 10:59:28 as
	SBML-SAT: a systems biology markup language (SBML) based sensitivity analysis tool. [My Copy] BMC bioinformatics, Vol. 9 (15 August 2008), 342. by Zhike Zi, Yanan Zheng, Ann E. Rundell, Edda Klipp posted to sbml by csgillespie on 2008-08-20 11:38:05 as along with 3 people jonathancooper renatomilani guhjy
	Modelling the flow of congestive heart failure patients through a hospital system [My Copy] Journal of the Operational Research Society, Vol. 58, No. 2. (2007), pp. 212-218. by B. Shaw, A. H. Marshall posted to data markov by csgillespie on 2008-05-08 10:07:58 as
	Gene Regulation at the Single-Cell Level [My Copy] Science, Vol. 307, No. 5717. (25 March 2005), pp. 1962-1965. by Nitzan Rosenfeld, Jonathan W. Young, Uri Alon, Peter S. Swain, Michael B. Elowitz posted to data by csgillespie on 2008-04-15 09:17:56 as along with 20 people dbikard pkm ddcttrl Borelli boko4ikameto kshundyak jimeet rklancer snuppepuppan kentsis Toze bayesian balicea JKelly555 balabu comb mhucka timflutre margaritis vladimirov
	Classical versus Stochastic Kinetics Modeling of Biochemical Reaction Systems [My Copy] Biophys. J., Vol. 92, No. 7. (1 April 2007), pp. 2350-2365. by John Goutsias posted to moment-closure stochastic by csgillespie on 2008-02-25 13:22:32 as along with 1 person ibschwartz
	Conditioned averages in chemical kinetics [My Copy] The Journal of Chemical Physics, Vol. 75, No. 2. (1981), pp. 704-709. by Daniel T. Gillespie, Marc Mangel posted to moment-closure stochastic by csgillespie on 2008-02-25 10:37:11 as
	Non-linear optimization of biochemical pathways: applications to metabolic engineering and parameter estimation [My Copy] Bioinformatics (Oxford, England) In Bioinformatics, Vol. 14, No. 10. (1 November 1998), pp. 869-883. by P. Mendes, D. Kell posted to data estimation hiv by csgillespie on 2008-01-22 15:26:21 as along with 6 people and 1 group nicholasflann peterli yujiangwang dullhunk dagmar pmendes compneur
	Towards Reusing Model Components in Systems Biology [My Copy] Computational Methods in Systems Biology (2005), pp. 192-206. by Adelinde M. Uhrmacher, Daniela Degenring, Jens Lemcke, Mario Krahmer posted to sysbio by csgillespie on 2008-01-18 23:15:16 as along with 2 people and 3 groups carmaus dagmar dIEMoSIRIS MoSi-Rostock compneur
	The SBML discrete stochastic models test suite [My Copy] Bioinformatics, Vol. 24, No. 2. (15 January 2008), pp. 285-286. by Thomas W. Evans, Colin S. Gillespie, Darren J. Wilkinson posted to no-tag by csgillespie on 2008-01-15 09:33:32 as along with 3 people tonamswish mailund Ema
	A Derivative Matching Approach to Moment Closure for the Stochastic Logistic Model [My Copy] Bulletin of Mathematical Biology, Vol. 69, No. 6. (2007), pp. 1909-1925. by Abhyudai Singh, João Hespanha posted to moment-closure by csgillespie on 2007-12-06 12:14:45 as
	Stochastic Noise and Synchronisation during Dictyostelium Aggregation Make cAMP Oscillations Robust [My Copy] PLoS Computational Biology, Vol. 3, No. 11. (1 November 2007), e218. by Jongrae Kim, Pat Heslop-Harrison, Ian Postlethwaite, Declan G. Bates posted to no-tag by csgillespie on 2007-12-03 11:59:44 as
	Steady-state expression of self-regulated genes [My Copy] Bioinformatics, Vol. 23, No. 23. (1 December 2007), pp. 3185-3192. by T. Fournier, J. P. Gabriel, C. Mazza, J. Pasquier, J. L. Galbete, N. Mermod posted to stochastic sysbio by csgillespie on 2007-11-27 20:24:56 as along with 1 person austin
	SBML-PET: a Systems Biology Markup Language-based parameter estimation tool. [My Copy] Bioinformatics (Oxford, England), Vol. 22, No. 21. (1 November 2006), pp. 2704-2705. by Zhike Zi, Edda Klipp posted to data estimation parameter by csgillespie on 2007-11-02 16:34:06 as along with 5 people schwartzjmc cannin dullhunk jrbanga Ronalddonald
	A practical guide to stochastic simulations of reaction-diffusion processes [My Copy] (19 Nov 2007) by Radek Erban, Jonathan Chapman, Philip Maini posted to no-tag by csgillespie on 2007-10-31 21:33:08 as along with 6 people and 3 groups citemyface amhr supertjhok cottrell roland_ewald dagmar dIEMoSIRIS MoSi-Rostock compneur
	Chaos in a Three-Species Food Chain [My Copy] Ecology, Vol. 72, No. 3. (1991), pp. 896-903. by Alan Hastings, Thomas Powell posted to chaos by csgillespie on 2007-10-31 13:52:27 as
	Conservation laws and unidentifiability of rate expressions in biochemical models [My Copy] Systems Biology, IET In Systems Biology, IET, Vol. 1, No. 4. (2007), pp. 230-237. by M. Anguelova, G. Cedersund, M. Johansson, C. J. Franzen, B. Wennberg posted to computer-simulation mathematical-modelling model sensitivity by csgillespie on 2007-10-23 10:58:17 as along with 1 person fishtank
	The statistical mechanics of complex signaling networks: nerve growth factor signaling. [My Copy] Physical biology, Vol. 1, No. 3-4. (December 2004), pp. 184-195. by K. S. Brown, C. C. Hill, G. A. Calero, et al.C. R. Myers, K. H. Lee, J. P. Sethna, R. A. Cerione posted to data model by csgillespie on 2007-10-11 13:30:22 as along with 2 people ajaymalik cjryan
	Universally sloppy parameter sensitivities in systems biology models. [My Copy] PLoS computational biology, Vol. 3, No. 10. (1 October 2007), pp. 1871-1878. by Ryan N. Gutenkunst, Joshua J. Waterfall, Fergal P. Casey, Kevin S. Brown, Christopher R. Myers, James P. Sethna posted to sensitivity by csgillespie on 2007-10-11 13:27:32 as along with 6 people PaperCollector schwartzjmc aheilbut jjray chad_davis jooce
	Estimation of the number of extreme pathways for metabolic networks [My Copy] BMC Bioinformatics, Vol. 8 (27 September 2007), 363. by Matthew Yeung, Ines Thiele, Bernard O. Palsson posted to no-tag by csgillespie on 2007-09-29 17:11:29 as
	Robust parameter estimation techniques for stochastic within-host macroparasite models [My Copy] pp. 419-430. by S. Riley posted to moment-closure by csgillespie on 2007-09-27 20:11:40 as
	Novel bivariate moment-closure approximations [My Copy] Mathematical Biosciences, Vol. 208, No. 2. (August 2007), pp. 621-643. by Isthrinayagy Krishnarajah, Glenn Marion, Gavin Gibson posted to moment-closure by csgillespie on 2007-08-26 10:00:13 as
	Novel moment closure approximations in stochastic epidemics. [My Copy] Bull Math Biol, Vol. 67, No. 4. (July 2005), pp. 855-873. by I. Krishnarajah, A. Cook, G. Marion, G. Gibson posted to moment-closure by csgillespie on 2007-08-26 09:59:15 as along with 1 person and 1 group e2holmes Stoc_Proc_Ecology_WG
	A method for estimating stochastic noise in large genetic regulatory networks [My Copy] Bioinformatics, Vol. 21, No. 2., 208. by David Orrell, Stephen Ramsey, Pedro d. de Atauri, Hamid Bolouri posted to simulations stochastic by csgillespie on 2007-08-16 15:22:58 as along with 1 person cottrell
	Discrete Event Modeling and Simulation in Systems Biology [My Copy] Journal of Simulation, Vol. 1, No. 2. (2007), pp. 81-96. by Roland Ewald, Carsten Maus, Arndt Rolfs, Adelinde M. Uhrmacher posted to computer-simulation by csgillespie on 2007-08-15 21:31:52 as along with 1 person and 2 groups roland_ewald dIEMoSIRIS MoSi-Rostock

Note: You may cite this page as: http://www.citeulike.org/user/csgillespie

moment-closure	6
data	5
queue	4
cgharray	4
nina	4
stochastic	4
estimation	2
sensitivity	2
sysbio	2
model	2
computer-simulation	2
parameter	1
markov	1
simulations	1
chaos	1
hiv	1
sbml	1
mathematical-modelling	1

csgillespie's library 34 articles Export

csgillespie's tags