csrocha's library 118 articles Export

	Mayavi2 User Guide [My Copy] (2008) by Prabhu Ramachandran, Ga"l Varoquaux posted to mayavi by csrocha on 2009-09-23 04:34:49 as
	The Mayavi data visualizer [My Copy] (2005--) by Prabhu Ramachandran, Gaël Varoquaux posted to mayavi by csrocha on 2009-09-23 04:34:49 as
	Mayavi: Making 3D Data Visualization Reusable [My Copy] In Proceedings of the 7th Python in Science Conference (2008), pp. 51-56. by Prabhu Ramachandran, Gaël Varoquaux edited by Gaël Varoquaux, Travis Vaught, Jarrod Millman posted to mayavi by csrocha on 2009-09-23 04:34:49 as
	TVTK: A Pythonic VTK [My Copy] In EuroPython Conference Proceedings (2005) by Prabhu Ramachandran posted to vtk tvtk traits mayavi envisage by csrocha on 2009-09-23 04:34:49 as
	MayaVi2: The next generation [My Copy] In EuroPython Conference Proceedings (2005) by Prabhu Ramachandran posted to visualization tvtk traits scientific mayavi envisage data by csrocha on 2009-09-23 04:34:49 as
	VMD: Visual molecular dynamics [My Copy] Journal of Molecular Graphics, Vol. 14, No. 1. (February 1996), pp. 33-38. by W. Humphrey posted to visualization program molecular by csrocha on 2009-09-23 04:19:38 as along with 6 people and 1 group whitead r2s2 pavanghatty choonpeng RamuAnandakrishnan tji Jiang Research Group
	Python 3 Reference Manual [My Copy] (10 March 2009) by Guido Van Rossum, Fred L. Drake edited by Fred L. Drake posted to no-tag by csrocha on 2009-09-23 04:16:59 as
	The PyMOL Molecular Graphics System [My Copy] (2002) by Warren DeLano edited by DeLano Scientific posted to visualization protein program by csrocha on 2009-09-23 03:50:56 as
	The Amber biomolecular simulation programs. [My Copy] Journal of computational chemistry, Vol. 26, No. 16. (December 2005), pp. 1668-1688. by David A. Case, Thomas E. Cheatham, Tom Darden, et al.Holger Gohlke, Ray Luo, Kenneth M. Merz, Alexey Onufriev, Carlos Simmerling, Bing Wang, Robert J. Woods posted to simulation_programs simulation program nucleic_acids molecular_dynamics model_building free_energy_calculations energy_refinement dynamic current_features computational_chemistry biomolecular_simulation by csrocha on 2009-09-23 03:38:21 as along with 18 people and 3 groups krapnik nickolay mmuecke flbarroso charris5 pavanghatty tahereh62 lna jwm ttjoseph xdeupi tovrstra bilab RamuAnandakrishnan IrinaMoreira adilson_mohr mikaellund gisle Radiation_Damage Stressosome LabCompMed
	Molecular mechanism of membrane recruitment of GGA by ARF in lysosomal protein transport. [My Copy] Nature structural biology, Vol. 10, No. 5. (May 2003), pp. 386-393. by Tomoo Shiba, Masato Kawasaki, Hiroyuki Takatsu, et al.Terukazu Nogi, Naohiro Matsugaki, Noriyuki Igarashi, Mamoru Suzuki, Ryuichi Kato, Kazuhisa Nakayama, Soichi Wakatsuki posted to cristalography complex by csrocha on 2009-09-23 00:58:00 as along with 1 person laurabailey
	Fuzzy molecular surfaces. [My Copy] Journal of biomolecular structure & dynamics, Vol. 9, No. 4. (February 1992), pp. 759-768. by M. E. Agishtein posted to surface solvent accessible by csrocha on 2009-09-20 13:14:06 as along with 1 group structural_bioinformatics
	Solvent accessible surface area and excluded volume in proteins. Analytical equations for overlapping spheres and implications for the hydrophobic effect. [My Copy] Journal of molecular biology, Vol. 178, No. 1. (5 September 1984), pp. 63-89. by T. J. Richmond posted to surface solvent protein desolvation accesible by csrocha on 2009-09-20 12:59:36 as along with 1 person and 1 group Lombardo_7 structural_bioinformatics
	Biomolecular Electrostatics with the Linearized Poisson-Boltzmann Equation [My Copy] Biophysical Journal, Vol. 76, No. 1. (January 1999), pp. 1-16. by F. Fogolari posted to protein poisson equation electrostatic boltzmann by csrocha on 2009-08-25 19:10:09 as along with 3 people onufriev dfgreen lillekatt
	Efficient implementation of quaternion Fourier transform, convolution, and correlation by 2-D complex FFT [My Copy] Signal Processing, IEEE Transactions on In Signal Processing, IEEE Transactions on, Vol. 49, No. 11. (2001), pp. 2783-2797. by Soo-Chang Pei, Jian-Jiun Ding, Ja-Han Chang posted to correlation fft quaternion by csrocha on 2009-07-29 17:42:15 as
	Solving a Hamiltonian Path Problem with a bacterial computer [My Copy] Journal of Biological Engineering, Vol. 3, No. 1. (2009), 11. by Jordan Baumgardner, Karen Acker, Oyinade Adefuye, et al.Samuel Crowley, Will DeLoache, James Dickson, Lane Heard, Andrew Martens, Nickolaus Morton, Michelle Ritter, Amber Shoecraft, Jessica Treece, Matthew Unzicker, Amanda Valencia, Mike Waters, A. Malcolm Campbell, Laurie Heyer, Jeffrey Poet, Todd Eckdahl posted to biological computing by csrocha on 2009-07-26 14:24:46 as along with 5 people abhishek_tiwari pablocarb Fantozzi jjrohal neveaire
	Level Set Methods and Dynamic Implicit Surfaces [My Copy] (31 October 2002) by Stanley J. Osher, Ronald P. Fedkiw posted to dynamic implicit level method set surfaces by csrocha on 2009-06-26 18:18:13 as along with 5 people and 1 group iannis watter1985 gracev Zaphod singhsh Medical Image Analysis and Visualization @ OSU
	Mathematical Problems in Image Processing: Partial Differential Equations and the Calculus of Variations (Applied Mathematical Sciences) [My Copy] (01 August 2006) by Gilles Aubert, Pierre Kornprobst posted to calculus differential equation image introduction partial processing variations by csrocha on 2009-06-26 18:16:22 as
	QualitySNP: a pipeline for detecting single nucleotide polymorphisms and insertions/deletions in EST data from diploid and polyploid species [My Copy] BMC Bioinformatics, Vol. 7, No. 1. (09 October 2006), 438. by Jifeng Tang, Ben Vosman, Roeland Voorrips, C. Gerard van der Linden, Jack Leunissen posted to automatic detection snp by csrocha on 2009-05-28 19:34:01 as along with 5 people and 1 group rs orzenil farhat guhjy Ayest Bioinformatics
	SNP-PHAGE - High throughput SNP discovery pipeline [My Copy] BMC Bioinformatics, Vol. 7, No. 1. (23 October 2006), 468. by Lakshmi Matukumalli, John Grefenstette, David Hyten, Ik Y. Choi, Perry Cregan, Curtis Van Tassell posted to automatic detection snp by csrocha on 2009-05-28 19:29:49 as along with 6 people sandfire n00c daforerog natstreet druvus guhjy
	novoSNP, a novel computational tool for sequence variation discovery [My Copy] Genome Research, Vol. 15, No. 3. (March 2005), pp. 436-442. by Stefan Weckx, Jurgen Del-Favero, Rosa Rademakers, et al.Lieve Claes, Marc Cruts, Peter De Jonghe, Christine Van Broeckhoven, Peter De Rijk posted to no-tag by csrocha on 2009-05-28 19:25:14 as along with 4 people n00c daforerog Ayest farhat
	novoSNP3: variant detection and sequence annotation in resequencing projects. [My Copy] Methods in molecular biology (Clifton, N.J.), Vol. 396 (2007), pp. 331-344. by P. D. Rijk, J. Del-Favero posted to automatic detection snp by csrocha on 2009-05-28 19:24:07 as along with 1 person n00c
	PolyPhred analysis software for mutation detection from fluorescence-based sequence data. [My Copy] Current protocols in human genetics / editorial board, Jonathan L. Haines ... [et al.], Vol. Chapter 7 (October 2008) by K. T. Montgomery, O. Iartchouck, L. Li, S. Loomis, V. Obourn, R. Kucherlapati posted to automatic detection snp by csrocha on 2009-05-28 19:20:07 as
	VarDetect: a nucleotide sequence variation exploratory tool. [My Copy] BMC bioinformatics, Vol. 9 Suppl 12 (2008) by C. Ngamphiw, S. Kulawonganunchai, A. Assawamakin, E. Jenwitheesuk, S. Tongsima posted to automatic snp by csrocha on 2009-05-28 18:46:25 as along with 1 person daforerog
	InSNP: a tool for automated detection and visualization of SNPs and InDels. [My Copy] Human mutation, Vol. 26, No. 1. (July 2005), pp. 11-19. by Carl Manaster, Weiyue Zheng, Markus Teuber, et al.Stefan Wächter, Frank Döring, Stefan Schreiber, Jochen Hampe posted to automatic detection snp by csrocha on 2009-05-28 18:32:34 as along with 2 people daforerog ohara
	SNPdetector: a software tool for sensitive and accurate SNP detection. [My Copy] PLoS computational biology, Vol. 1, No. 5. (28 October 2005), e53. by Jinghui Zhang, David A. Wheeler, Imtiaz Yakub, et al.Sharon Wei, Raman Sood, William Rowe, Paul P. Liu, Richard A. Gibbs, Kenneth H. Buetow posted to automatic detection snp by csrocha on 2009-05-27 21:34:52 as along with 4 people n00c natstreet druvus Ayest
	Polar hydrogen positions in proteins: empirical energy placement and neutron diffraction comparison. [My Copy] Proteins, Vol. 4, No. 2. (1988), pp. 148-156. by A. T. Brünger, M. Karplus posted to empirical energy hydrogen polar protein by csrocha on 2009-05-19 10:44:01 as along with 1 person dfgreen
	Face Recognition Based on Fitting a 3D Morphable Model [My Copy] IEEE Trans. Pattern Anal. Mach. Intell., Vol. 25, No. 9. (September 2003), pp. 1063-1074. by Volker Blanz, Thomas Vetter posted to 3d face recognition by csrocha on 2009-05-11 17:54:54 as along with 2 people bamberg thorgal
	3D FACE RECOGNITION FOR BIOMETRIC APPLICATIONS [My Copy] by Akarun posted to applications biometry face recognition by csrocha on 2009-05-11 17:52:38 as
	Customizing scoring functions for docking [My Copy] Journal of Computer-Aided Molecular Design, Vol. 22, No. 5. (May 2008), pp. 269-286. by Tuan Pham, Ajay Jain posted to docking function scoring by csrocha on 2009-04-27 21:51:40 as along with 1 person and 1 group oteri Multiple Instance Learning
	Decoys for docking. [My Copy] J Med Chem, Vol. 48, No. 11. (2 June 2005), pp. 3714-3728. by A. P. Graves, R. Brenk, B. K. Shoichet posted to docking function molecular score by csrocha on 2009-04-27 17:42:22 as along with 8 people and 4 groups oteri simranjeet BragilMassoud dgruiz yongzhao sangeetha insilico blackbart Bioinformatics TSRI_MGL insilicodrug Computer Aided Drug Design
	Dengue spatial and temporal patterns, French Guiana, 2001. [My Copy] Emerging infectious diseases, Vol. 10, No. 4. (April 2004), pp. 615-621. by A. Tran, X. Deparis, P. Dussart, et al.J. Morvan, P. Rabarison, F. Remy, L. Polidori, J. Gardon posted to dengue french guiana sample by csrocha on 2009-04-24 16:46:34 as
	Space-time analysis of the dengue spreading dynamics in the 2004 Tartagal outbreak, Northern Argentina. [My Copy] Acta tropica, Vol. 103, No. 1. (July 2007), pp. 1-13. by C. Rotela, F. Fouque, M. Lamfri, et al.P. Sabatier, V. Introini, M. Zaidenberg, C. Scavuzzo posted to argentina dengue sample by csrocha on 2009-04-24 16:32:18 as
	Determination of atomic desolvation energies from the structures of crystallized proteins [My Copy] Journal of Molecular Biology, Vol. 267, No. 3. (04 April 1997), pp. 707-726. by C. Zhang posted to algorithm desolvation by csrocha on 2009-04-23 23:02:12 as along with 4 people ras ffranca bluvsh1 GermanErlenkamp
	Bioinformatics: From Genomes to Drugs [My Copy] (25 July 2001) edited by Thomas Lengauer, Raimund Mannhold, Hugo Kubinyi, Hendrik Timmerman posted to bioinformatic docking drug estructural genome protein by csrocha on 2009-04-05 15:51:57 as
	Environment and exposure to solvent of protein atoms. Lysozyme and insulin [My Copy] Journal of Molecular Biology, Vol. 79, No. 2. (15 September 1973), pp. 351-364. by A. Shrake, J. Rupley posted to accessible algorithm protein sas solvent surface by csrocha on 2009-04-04 11:46:18 as along with 1 person and 1 group mijam structural_bioinformatics
	IMMUNOBIOLOGY 7 PB (Janeway's Immunobiology) (Immunobiology: The Immune System (Janeway)) [My Copy] (27 November 2007) by Kenneth Murphy posted to biology immunobiology protein by csrocha on 2009-03-31 02:41:14 as along with 2 people jclau tomhebbron
	ClusPro: a fully automated algorithm for protein-protein docking. [My Copy] Nucleic Acids Res, Vol. 32, No. Web Server issue. (1 July 2004), pp. 96-99. by S. R. Comeau, D. W. Gatchell, S. Vajda, C. J. Camacho posted to algorithm application docking protein web by csrocha on 2009-03-30 20:47:59 as along with 2 people bicko dgront
	Kinetics of Desolvation-Mediated Protein–Protein Binding [My Copy] Biophysical Journal, Vol. 78, No. 3. (1 March 2000), pp. 1094-1105. by C. Camacho posted to desolvation docking kinetic protein solvation by csrocha on 2009-03-30 20:38:51 as along with 3 people itmeson yarikson ras
	A review of protein-small molecule docking methods. [My Copy] J Comput Aided Mol Des, Vol. 16, No. 3. (March 2002), pp. 151-166. by R. D. Taylor, P. J. Jewsbury, J. W. Essex posted to docking methods protein review by csrocha on 2009-03-30 20:13:35 as along with 6 people and 5 groups klexa oteri marcius sangeetha schlauchi massivemayhem Structural Biology Group TorVergata Bioinformatics insilicodrug BioinfoCIPF SGU-CIPF
	Computational evaluation of protein-small molecule binding. [My Copy] Current opinion in structural biology, Vol. 19, No. 1. (20 February 2009), pp. 56-61. by O. Guvench, A. D. MacKerell posted to docking evaluation function protein score by csrocha on 2009-03-30 20:12:56 as along with 5 people and 2 groups sobolevnrm flbarroso ucbcjbm phoenixzxl barry baker-group McCammon
	Principles of docking: An overview of search algorithms and a guide to scoring functions. [My Copy] Proteins, Vol. 47, No. 4. (1 June 2002), pp. 409-443. by Inbal Halperin, Buyong Ma, Haim Wolfson, Ruth Nussinov posted to algorithm docking function overview protein review scoring search by csrocha on 2009-03-30 15:07:50 as along with 25 people and 4 groups rabio ucbcjbm flbarroso oteri timg dgruiz cantupaz apaydin bicko chad_davis yongzhao ttjoseph nickolay ima sangeetha dgront blackbart gane5h mmuecke kazemi bpagano massivemayhem cjeans Evangelia nigham Structural Biology Group TorVergata Bioinformatics TSRI_MGL insilicodrug
	Towards a network theory of the immune system. [My Copy] Annales d'immunologie, Vol. 125C, No. 1-2. (January 1974), pp. 373-389. by N. K. Jerne posted to immune network system theory by csrocha on 2009-03-25 21:04:34 as along with 3 people MartinaHusakova guohaile tomhebbron
	Intelligent agents and their applications [My Copy] (2002) edited by Lakhmi C. Jain, Zhengxin Chen, Nikhil Ichalkaranje posted to agents application intelligent by csrocha on 2009-03-25 20:59:19 as
	An artificial immune system as a multi-agent decision support [My Copy] Systems, Man, and Cybernetics, 1998. 1998 IEEE International Conference on In Systems, Man, and Cybernetics, 1998. 1998 IEEE International Conference on, Vol. 4 (1998), pp. 3816-3820 vol.4. by D. Dasgupta posted to artificial immune multi-agent system by csrocha on 2009-03-25 17:39:15 as along with 1 person syrp64
	Teams of intelligent agents which learn using artificial immune systems [My Copy] J. Netw. Comput. Appl., Vol. 29, No. 2. (2006), pp. 147-159. by Colin Fyfe, Lakhmi Jain posted to agents artificial immune intelligent system by csrocha on 2009-03-25 17:38:27 as
	Artficial Immune Systems and Their Applications [My Copy] (1998) by Dipankar DasGupta posted to application artificial immune system by csrocha on 2009-03-25 17:37:53 as along with 4 people jimmyhendrix japarejo jstephens tomhebbron
	An artificial immune system model for intelligent agents [My Copy] Future Generation Computer Systems, Vol. 17, No. 4. (January 2001), pp. 335-343. by R. King posted to agents artificial immune intelligent system by csrocha on 2009-03-25 15:59:09 as
	Optimization methods for computing global minima of nonconvex potential energy functions [My Copy] Journal of Global Optimization, Vol. 4, No. 2. (1 March 1994), pp. 117-133. by Panos M. Pardalos, David Shalloway, Guoliang Xue posted to energy function global methods nonconvex optimization protein by csrocha on 2009-03-17 18:47:34 as along with 1 person and 4 groups aitter structural_bioinformatics MathBio Numerics Optimization
	Protein-protein docking benchmark version 3.0 [My Copy] Proteins: Structure, Function, and Bioinformatics, Vol. 9999, No. 9999. (2008), NA. by Howook Hwang, Brian Pierce, Julian Mintseris, Joël Janin, Zhiping Weng posted to benchmark docking protein by csrocha on 2009-01-12 19:43:08 as along with 2 people marti bicko
	Principles of flexible protein-protein docking [My Copy] Proteins: Structure, Function, and Bioinformatics, Vol. 73, No. 2. (2008), pp. 271-289. by Nelly Andrusier, Efrat Mashiach, Ruth Nussinov, Haim J. Wolfson posted to docking flexible protein review by csrocha on 2008-11-10 18:05:04 as along with 3 people and 1 group bicko aqeel LamBras structural_bioinformatics

Note: You may cite this page as: http://www.citeulike.org/user/csrocha

Result page: 1 2 3 Next

protein	65
docking	59
molecular	11
automatic	7
function	7
snp	7
biological	6
desolvation	6
detection	6
algorithm	5
immune	5
level	5
mayavi	5
solvation	5
surface	5
system	5
artificial	4
computing	4
dynamic	4
interface	4
review	4
shape	4
agents	3
application	3
benchmark	3
catalytic	3
complementary	3
computational	3
correlation	3
electrostatic	3
electrostatics	3
flexible	3
geometry	3
intelligent	3
optimization	3
prediction	3
program	3
scoring	3
sets	3
site	3
solvent	3
visualization	3
accessible	2
biology	2
capri	2
continuum	2
dengue	2
energy	2
envisage	2
equation	2
face	2
fourier	2
geometric	2
global	2
implicit	2
library	2
methods	2
modeling	2
modes	2
normal	2
polar	2
recognition	2
residues	2
sample	2
score	2
set	2
simulation	2
sites	2
traits	2
tvtk	2
3d	1
abstracts	1
accesible	1
active	1
amber	1
applications	1
argentina	1
backbone	1
bioinformatic	1
biometry	1
biomolecular_simulation	1
boltzmann	1
calculus	1
chain	1
change	1
complementarity	1
complemetary	1
complex	1
computational_chemistry	1
computer	1
conformation	1
contourn	1
cristalography	1
crystallography	1
current_features	1
data	1
design	1
diagram	1
differential	1
distance	1
dna	1
drug	1
empirical	1
energy_refinement	1
enzyme	1
enzymes	1
estructural	1
evaluation	1
evolution	1
fft	1
field	1
fit	1
folding	1
force	1
free_energy_calculations	1
french	1
genome	1
gpu	1
grid	1
guiana	1
harmonics	1
hydrogen	1
image	1
immunobiology	1
init	1
interaction	1
introduction	1
kinetic	1
method	1
model	1
model_building	1
molecular_dynamics	1
multi-agent	1
n-dimensional	1
network	1
nonconvex	1
nucleic_acids	1
overview	1
parallel	1
parameter	1
partial	1
poisson	1
problem	1
processing	1
protonation	1
quaternion	1
refinement	1
rotamer	1
rotation	1
sas	1
scientific	1
search	1
sequence	1
side	1
side-chain	1
simulation_programs	1
spherical	1
structure	1
surfaces	1
template	1
theory	1
transform	1
tree	1
variations	1
vision	1
voronoid	1
vtk	1
web	1
workshop	1

csrocha's library 118 articles Export

csrocha's tags