UTRdb and UTRsite (RELEASE 2010): a collection of sequences and regulatory motifs of the untranslated regions of eukaryotic mRNAs. Export

@article{citeulike:6061275, abstract = {The 5' and 3' untranslated regions of eukaryotic mRNAs (UTRs) play crucial roles in the post-transcriptional regulation of gene expression through the modulation of nucleo-cytoplasmic mRNA transport, translation efficiency, subcellular localization and message stability. UTRdb is a curated database of 5' and 3' untranslated sequences of eukaryotic mRNAs, derived from several sources of primary data. Experimentally validated functional motifs are annotated and also collated as the UTRsite database where more specific information on the functional motifs and cross-links to interacting regulatory protein are provided. In the current update, the UTR entries have been organized in a gene-centric structure to better visualize and retrieve 5' and 3'UTR variants generated by alternative initiation and termination of transcription and alternative splicing. Experimentally validated miRNA targets and conserved sequence elements are also annotated. The integration of UTRdb with genomic data has allowed the implementation of an efficient annotation system and a powerful retrieval resource for the selection and extraction of specific UTR subsets. All internet resources implemented for retrieval and functional analysis of 5' and 3' untranslated regions of eukaryotic mRNAs are accessible at http://utrdb.ba.itb.cnr.it/.}, author = {Grillo, Giorgio and Turi, Antonio and Licciulli, Flavio and Mignone, Flavio and Liuni, Sabino and Banfi, Sandro and Gennarino, Vincenzo Alessandro A. and Horner, David S. and Pavesi, Giulio and Picardi, Ernesto and Pesole, Graziano}, citeulike-article-id = {6061275}, citeulike-linkout-0 = {http://dx.doi.org/10.1093/nar/gkp902}, citeulike-linkout-1 = {http://view.ncbi.nlm.nih.gov/pubmed/19880380}, citeulike-linkout-2 = {http://www.hubmed.org/display.cgi?uids=19880380}, day = {30}, doi = {10.1093/nar/gkp902}, issn = {1362-4962}, journal = {Nucleic acids research}, keywords = {genomics, mirna, silico}, month = {October}, posted-at = {2009-11-04 20:42:14}, priority = {2}, title = {UTRdb and UTRsite (RELEASE 2010): a collection of sequences and regulatory motifs of the untranslated regions of eukaryotic mRNAs.}, url = {http://dx.doi.org/10.1093/nar/gkp902}, year = {2009} }

TY - JOUR ID - citeulike:6061275 L3 - citeulike-article-id:6061275 N2 - The 5' and 3' untranslated regions of eukaryotic mRNAs (UTRs) play crucial roles in the post-transcriptional regulation of gene expression through the modulation of nucleo-cytoplasmic mRNA transport, translation efficiency, subcellular localization and message stability. UTRdb is a curated database of 5' and 3' untranslated sequences of eukaryotic mRNAs, derived from several sources of primary data. Experimentally validated functional motifs are annotated and also collated as the UTRsite database where more specific information on the functional motifs and cross-links to interacting regulatory protein are provided. In the current update, the UTR entries have been organized in a gene-centric structure to better visualize and retrieve 5' and 3'UTR variants generated by alternative initiation and termination of transcription and alternative splicing. Experimentally validated miRNA targets and conserved sequence elements are also annotated. The integration of UTRdb with genomic data has allowed the implementation of an efficient annotation system and a powerful retrieval resource for the selection and extraction of specific UTR subsets. All internet resources implemented for retrieval and functional analysis of 5' and 3' untranslated regions of eukaryotic mRNAs are accessible at http://utrdb.ba.itb.cnr.it/. JF - Nucleic acids research SN - 1362-4962 TI - UTRdb and UTRsite (RELEASE 2010): a collection of sequences and regulatory motifs of the untranslated regions of eukaryotic mRNAs. KW - genomics KW - mirna KW - silico AU - Grillo, Giorgio AU - Turi, Antonio AU - Licciulli, Flavio AU - Mignone, Flavio AU - Liuni, Sabino AU - Banfi, Sandro AU - Gennarino, Vincenzo Alessandro AU - Horner, David AU - Pavesi, Giulio AU - Picardi, Ernesto AU - Pesole, Graziano PY - 2009/10/30/ UR - http://dx.doi.org/10.1093/nar/gkp902 ER -