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	JANE: efficient mapping of prokaryotic ESTs and variable length sequence reads on related template genomes. [My Copy] BMC bioinformatics, Vol. 10, No. 1. (2009), 391. by Chunguang Liang, Alexander Schmid, María José J. López-Sánchez, et al.Andres Moya, Roy Gross, Jörg Bernhardt, Thomas Dandekar posted to comparative_assembly assembly by dakelley on 2009-11-30 20:15:49 as along with 1 person freesci
	De novo sequencing of plant genomes using second-generation technologies [My Copy] Brief Bioinform, Vol. 10, No. 6. (1 November 2009), pp. 609-618. by Michael Imelfort, David Edwards posted to short-reads assembly by dakelley on 2009-11-24 22:47:44 as along with 7 people and 1 group GustavoLacerda jforment druvus bedo Jporci TRHvidsten davidmam Bioinformatics Core Service
	Human Genome Sequencing Using Unchained Base Reads on Self-Assembling DNA Nanoarrays [My Copy] Science (5 November 2009), 1181498. by Radoje Drmanac, Andrew B. Sparks, Matthew J. Callow, et al.Aaron L. Halpern, Norman L. Burns, Bahram G. Kermani, Paolo Carnevali, Igor Nazarenko, Geoffrey B. Nilsen, George Yeung, Fredrik Dahl, Andres Fernandez, Bryan Staker, Krishna P. Pant, Jonathan Baccash, Adam P. Borcherding, Anushka Brownley, Ryan Cedeno, Linsu Chen, Dan Chernikoff, Alex Cheung, Razvan Chirita, Benjamin Curson, Jessica C. Ebert, Coleen R. Hacker, Robert Hartlage, Brian Hauser, Steve Huang, Yuan Jiang, Vitali Karpinchyk, Mark Koenig, Calvin Kong, Tom Landers, Catherine Le, Jia Liu, Celeste E. McBride, Matt Morenzoni, Robert E. Morey, Karl Mutch, Helena Perazich, Kimberly Perry, Brock A. Peters, Joe Peterson, Charit L. Pethiyagoda, Kaliprasad Pothuraju, Claudia Richter, Abraham M. Rosenbaum, Shaunak Roy, Jay Shafto, Uladzislau Sharanhovich, Karen W. Shannon, Conrad G. Sheppy, Michel Sun, Joseph V. Thakuria, Anne Tran, Dylan Vu, Alexander W. Zaranek, Xiaodi Wu, Snezana Drmanac, Arnold R. Oliphant, William C. Banyai, Bruce Martin, Dennis G. Ballinger, George M. Church, Clifford A. Reid posted to assembly by dakelley on 2009-11-23 05:04:38 as along with 14 people and 1 group psique JonD qayub sandfire daforerog Peiyong chvlyl JamesBarger natstreet heliopais rwst orzenil zufar frohike Journal picks
	Increasing the coverage of a metapopulation consensus genome by iterative read mapping and assembly [My Copy] Bioinformatics, Vol. 25, No. 21. (1 November 2009), pp. 2878-2881. by Bas E. Dutilh, Martijn A. Huynen, Marc Strous posted to short-reads sequence-alignment metagenomics assembly by dakelley on 2009-11-02 04:32:58 as along with 9 people and 1 group CorinYeats skennedy8 druvus kinestetika ThomasDOtto jasontsai skembel sharpton jmeppley iSEEM
	De novo transcriptome assembly with ABySS [My Copy] Bioinformatics In Bioinformatics, Vol. 25, No. 21. (1 November 2009), pp. 2872-2877. by Inanc Birol, Shaun D. Jackman, Cydney B. Nielsen, et al.Jenny Q. Qian, Richard Varhol, Greg Stazyk, Ryan D. Morin, Yongjun Zhao, Martin Hirst, Jacqueline E. Schein, Doug E. Horsman, Joseph M. Connors, Randy D. Gascoyne, Marco A. Marra, Steven J. M. Jones posted to short-reads rna-seq de-bruijn assembly by dakelley on 2009-11-02 04:28:46 as along with 12 people fstrozzi orzenil n00c dswan torfinnnome TRHvidsten rtogawa ramonvidal stubrown darshan GustavoLacerda druvus
	Maximum likelihood genome assembly. [My Copy] Journal of computational biology : a journal of computational molecular cell biology, Vol. 16, No. 8. (August 2009), pp. 1101-1116. by Paul Medvedev, Michael Brudno posted to theory assembly by dakelley on 2009-10-28 20:31:10 as along with 7 people nuin walshtp djkt n00c natstreet druvus operon
	Hierarchical Scaffolding With Bambus [My Copy] Genome Research, Vol. 14, No. 1. (January 2004), pp. 149-159. by Mihai Pop, Daniel S. Kosack, Steven L. Salzberg posted to scaffolding assembly by dakelley on 2009-10-26 18:16:23 as along with 4 people and 1 group druvus azazello wenhan Neeperando MBLAB
	ALLPATHS 2: small genomes assembled accurately and with high continuity from short paired reads [My Copy] Genome Biology, Vol. 10, No. 10. (1 October 2009), R103. by Iain MacCallum, Dariusz Przybylski, Sante Gnerre, et al.Joshua Burton, Ilya Shlyakhter, Andreas Gnirke, Joel Malek, Kevin McKernan, Swati Ranade, Terrance Shea, Louise Williams, Sarah Young, Chad Nusbaum, David Jaffe posted to short-reads scaffolding de-bruijn assembly by dakelley on 2009-10-23 18:39:55 as along with 10 people and 1 group djkt n00c azazello jgill GustavoLacerda ramonvidal justinhjohnson stajich druvus neils Mycology
	OSLay: optimal syntenic layout of unfinished assemblies [My Copy] Bioinformatics, Vol. 23, No. 13. (1 July 2007), pp. 1573-1579. by Daniel C. Richter, Stephan C. Schuster, Daniel H. Huson posted to scaffold comparative_assembly assembly by dakelley on 2009-10-13 16:48:11 as along with 4 people n00c AaronDarling azazello GustavoLacerda
	Parametric complexity of sequence assembly: theory and applications to next generation sequencing. [My Copy] Journal of computational biology : a journal of computational molecular cell biology, Vol. 16, No. 7. (July 2009), pp. 897-908. by Niranjan Nagarajan, Mihai Pop posted to theory assembly by dakelley on 2009-10-13 15:49:40 as along with 4 people claire_jubin n00c sitalange nuin
	Correcting base-assignment errors in repeat regions of shotgun assembly. [My Copy] IEEE/ACM transactions on computational biology and bioinformatics / IEEE, ACM, Vol. 4, No. 1. (r 2007), pp. 54-64. by Degui Zhi, Uri Keich, Pavel Pevzner, Steffen Heber, Haixu Tang posted to duplications assembly by dakelley on 2009-10-12 21:38:04 as along with 2 people n00c ojabado
	A scaffold analysis tool using mate-pair information in genome sequencing. [My Copy] Journal of biomedicine & biotechnology, Vol. 2008 (2008) by Pan-Gyu G. Kim, Hwan-Gue G. Cho, Kiejung Park posted to scaffold assembly by dakelley on 2009-10-12 21:37:07 as along with 3 people n00c orzenil Neeperando
	A machine-learning approach to combined evidence validation of genome assemblies [My Copy] Bioinformatics, Vol. 24, No. 6. (15 March 2008), pp. 744-750. by Jeong-Hyeon Choi, Sun Kim, Haixu Tang, Justen Andrews, Don G. Gilbert, John K. Colbourne posted to post-assembly assembly by dakelley on 2009-10-09 23:36:32 as along with 7 people thegoose2 orzenil GustavoLacerda Neeperando tharris ttuechler bertelsen
	The greedy path-merging algorithm for contig scaffolding [My Copy] J. ACM, Vol. 49, No. 5. (September 2002), pp. 603-615. by Daniel H. Huson, Knut Reinert, Eugene W. Myers posted to theory assembly by dakelley on 2009-10-09 22:45:01 as along with 3 people and 1 group n00c azazello tpreeprem gatech-compgenomics
	Assembling the Marine Metagenome, One Cell at a Time [My Copy] PLoS ONE, Vol. 4, No. 4. (23 April 2009), e5299. by Tanja Woyke, Gary Xie, Alex Copeland, et al.José M. González, Cliff Han, Hajnalka Kiss, Jimmy H. Saw, Pavel Senin, Chi Yang, Sourav Chatterji, Jan-Fang Cheng, Jonathan A. Eisen, Michael E. Sieracki, Ramunas Stepanauskas posted to metagenomics assembly by dakelley on 2009-09-24 21:23:08 as along with 12 people and 3 groups jonathaneisen CorinYeats inquil hwright jonilaserson jlgreen chocolate2009 jmeppley vaulot Thaverkamp neils skoch3 iSEEM Papers recommended by the Roscoff Plankton Group Microbial-Ecology
	Use of simulated data sets to evaluate the fidelity of metagenomic processing methods [My Copy] Nature Methods, Vol. 4, No. 6. (29 April 2007), pp. 495-500. by Konstantinos Mavromatis, Natalia Ivanova, Kerrie Barry, et al.Harris Shapiro, Eugene Goltsman, Alice C. McHardy, Isidore Rigoutsos, Asaf Salamov, Frank Korzeniewski, Miriam Land, Alla Lapidus, Igor Grigoriev, Paul Richardson, Philip Hugenholtz, Nikos C. Kyrpides posted to metagenomics assembly by dakelley on 2009-09-09 18:38:57 as along with 19 people and 6 groups klo CorinYeats dutilh taylor73 sriesenfeld Thaverkamp skembel druvus Yanno oamg jmeppley bluto azazello GustavoLacerda carlk alexl mjetten jlgreen djkt 8_01 Glimcher_Lab Bioinformatics microbiology_nijmegen Green Lab iSEEM
	Assisted assembly: how to improve a de novo genome assembly by using related species [My Copy] Genome Biology, Vol. 10, No. 8. (2009), R88. by Sante Gnerre, Eric Lander, Kerstin L. Toh, David Jaffe posted to comparative_assembly assembly by dakelley on 2009-09-07 21:59:30 as along with 20 people and 2 groups n00c davidmam klo operon fstrozzi kiekyon torfinnnome jamselem err129 djkt darian APRegier thegoose danmaclean stajich natstreet neils druvus GustavoLacerda avilella Mycology Journal picks
	Sensitive, specific polymorphism discovery in bacteria using massively parallel sequencing. [My Copy] Nature methods, Vol. 6, No. 1. (14 January 2009), pp. 67-69. by Chad Nusbaum, Toshiro K. Ohsumi, James Gomez, et al.John Aquadro, Thomas C. Victor, Robert M. Warren, Deborah T. Hung, Bruce W. Birren, Eric S. Lander, David B. Jaffe posted to structural_variation short-reads assembly by dakelley on 2009-09-02 04:46:32 as along with 5 people seninp natstreet druvus jbhiatt abizar
	A Fast Hybrid Short Read Fragment Assembly Algorithm [My Copy] Bioinformatics In Bioinformatics, Vol. 25, No. 17. (17 June 2009), pp. btp374-2280. by Bertil Schmidt, Ranjan Sinha, Bryan Beresford-Smith, Simon J. Puglisi posted to short-reads assembly by dakelley on 2009-08-25 23:08:17 as along with 17 people and 2 groups darian torfinnnome hzoltan cthachuk orzenil GustavoLacerda APRegier katholt GeeSharpMinor dayjm djkt dswan pachorip natstreet druvus n00c jmeppley Bioinformatics Journal picks
	Integrating Sequencing Technologies in Personal Genomics: Optimal Low Cost Reconstruction of Structural Variants [My Copy] PLoS Comput Biol, Vol. 5, No. 7. (10 July 2009), e1000432. by Jiang Du, Robert D. Bjornson, Zhengdong D. Zhang, Yong Kong, Michael Snyder, Mark B. Gerstein posted to structural_variation assembly by dakelley on 2009-08-11 03:22:00 as along with 7 people tharris n00c operon nuin natstreet rdiaz guhjy
	The difficulty of avoiding false positives in genome scans for natural selection [My Copy] Genome Research, Vol. 19, No. 5. (May 2009), pp. 922-933. by Swapan Mallick, Sante Gnerre, Paul Muller, David Reich posted to assembly post-assembly by dakelley on 2009-06-17 15:52:58 as along with 4 people operon gjuggler djkt jbhiatt
	De novo fragment assembly with short mate-paired reads: Does the read length matter? [My Copy] Genome research, Vol. 19, No. 2. (3 February 2009), pp. 336-346. by Mark J. Chaisson, Dumitru Brinza, Pavel A. Pevzner posted to assembly short-reads by dakelley on 2009-05-18 15:52:23 as along with 19 people and 1 group claire_jubin darian n00c carlk APRegier jandot jonilaserson natstreet jessopher orzenil AaronDarling sphsmith jasontsai nmohelli jbhiatt druvus hpaces GustavoLacerda stajich Mycology
	Short read fragment assembly of bacterial genomes [My Copy] Genome Research, Vol. 18, No. 2. (1 February 2008), pp. 324-330. by Mark J. Chaisson, Pavel A. Pevzner posted to assembly short-reads by dakelley on 2009-05-18 15:49:06 as along with 17 people n00c pachorip APRegier thegoose2 Neeperando hpaces idoerg druvus jasontsai acn orzenil azazello GustavoLacerda dandaman caseybrown iris42 tharris
	Shotgun sequence assembly and recent segmental duplications within the human genome [My Copy] Nature, Vol. 431, No. 7011. (21 October 2004), pp. 927-930. by Xinwei She, Zhaoshi Jiang, Royden A. Clark, et al.Ge Liu, Ze Cheng, Eray Tuzun, Deanna M. Church, Granger Sutton, Aaron L. Halpern, Evan E. Eichler posted to assembly duplications by dakelley on 2009-05-12 19:10:13 as
	Consensus generation and variant detection by Celera Assembler [My Copy] Bioinformatics In Bioinformatics, Vol. 24, No. 8. (15 April 2008), pp. 1035-1040. by Gennady Denisov, Brian Walenz, Aaron L. Halpern, et al.Jason Miller, Nelson Axelrod, Samuel Levy, Granger Sutton posted to assembly haplotype by dakelley on 2009-05-12 03:54:13 as along with 7 people darian n00c orzenil natstreet druvus nmohelli semrich
	Aggressive assembly of pyrosequencing reads with mates [My Copy] Bioinformatics In Bioinformatics, Vol. 24, No. 24. (15 December 2008), pp. 2818-2824. by Jason R. Miller, Arthur L. Delcher, Sergey Koren, et al.Eli Venter, Brian P. Walenz, Anushka Brownley, Justin Johnson, Kelvin Li, Clark Mobarry, Granger Sutton posted to assembly short-reads by dakelley on 2009-05-12 03:48:57 as along with 18 people and 2 groups darian GustavoLacerda n00c APRegier jonilaserson idoerg orzenil ela503 natstreet druvus azazello acn jasontsai jmeppley cisevol malcook Neeperando djkt BergmanLab SIMR bioinformatics
	A consistency-based consensus algorithm for de novo and reference-guided sequence assembly of short reads [My Copy] Bioinformatics, Vol. 25, No. 9. (1 May 2009), pp. 1118-1124. by Tobias Rausch, Sergey Koren, Gennady Denisov, et al.David Weese, Anne-Katrin Emde, Andreas Doring, Knut Reinert posted to assembly short-reads by dakelley on 2009-05-07 16:45:01 as along with 21 people and 2 groups orzenil humburg jfr azazello hzoltan cthachuk GustavoLacerda jasontsai n00c nuin skembel Thaverkamp reyez TRHvidsten djkt hpaces APRegier pengchy natstreet druvus darian iSEEM Bioinformatics
	The Atlas Genome Assembly System [My Copy] Genome Research, Vol. 14, No. 4. (April 2004), pp. 721-732. by Paul Havlak, Rui Chen, K. James Durbin, et al.Amy Egan, Yanru Ren, Xing-Zhi Song, George M. Weinstock, Richard A. Gibbs posted to assembly by dakelley on 2009-05-03 18:57:31 as along with 4 people aprasad orzenil wenhan Neeperando
	ABySS: a parallel assembler for short read sequence data. [My Copy] Genome research, Vol. 19, No. 6. (1 June 2009), pp. 1117-1123. by Jared T. Simpson, Kim Wong, Shaun D. Jackman, Jacqueline E. Schein, Steven J. Jones, Inanç Birol posted to assembly hpc short-reads by dakelley on 2009-04-30 18:05:40 as along with 27 people and 2 groups darian jfr cthachuk hzoltan ramonvidal orzenil pachorip GustavoLacerda jonilaserson operon polivares reyez jasontsai n00c humburg jessopher idonaldson robsyme neils natstreet AaronDarling druvus rpatward dswan stajich jbhiatt erikarner BergmanLab Mycology
	Parallel short sequence assembly of transcriptomes [My Copy] BMC Bioinformatics, Vol. 10, No. Suppl 1. (2009), S14. by Benjamin Jackson, Patrick Schnable, Srinivas Aluru posted to short-reads rna-seq hpc assembly by dakelley on 2009-04-30 18:04:42 as along with 3 people n00c natstreet Scis0000002
	Genome sequence and rapid evolution of the rice pathogen Xanthomonas oryzae pv. oryzae PXO99A [My Copy] BMC Genomics, Vol. 9, No. 1. (2008) by Steven Salzberg, Daniel Sommer, Michael Schatz, et al.Adam Phillippy, Pablo Rabinowicz, Seiji Tsuge, Ayako Furutani, Hirokazu Ochiai, Arthur Delcher, David Kelley, Ramana Madupu, Daniela Puiu, Diana Radune, Martin Shumway, Cole Trapnell, Gudlur Aparna, Gopaljee Jha, Alok Pandey, Prabhu Patil, Hiromichi Ishihara, Damien Meyer, Boris Szurek, Valerie Verdier, Ralf Koebnik, Maxwell J. Dow, Robert Ryan, Hisae Hirata, Shinji Tsuyumu, Sang W. Lee, Pamela Ronald, Ramesh Sonti, Marie A. Van Sluys, Jan Leach, Frank White, Adam Bogdanove posted to assembly by dakelley on 2009-04-28 16:30:09 as along with 1 person neils
	A whole-genome assembly of Drosophila. [My Copy] Science (New York, N.Y.), Vol. 287, No. 5461. (24 March 2000), pp. 2196-2204. by E. W. Myers, G. G. Sutton, A. L. Delcher, et al.I. M. Dew, D. P. Fasulo, M. J. Flanigan, S. A. Kravitz, C. M. Mobarry, K. H. Reinert, K. A. Remington, E. L. Anson, R. A. Bolanos, H. H. Chou, C. M. Jordan, A. L. Halpern, S. Lonardi, E. M. Beasley, R. C. Brandon, L. Chen, P. J. Dunn, Z. Lai, Y. Liang, D. R. Nusskern, M. Zhan, Q. Zhang, X. Zheng, G. M. Rubin, M. D. Adams, J. C. Venter posted to assembly genome by dakelley on 2009-04-06 19:50:03 as along with 8 people and 3 groups taroleo Neeperando bluto azazello wenhan tpreeprem yoanjacquemin cisevol MBLAB gatech-compgenomics Drosophila-Genetics-Genomics-2008
	The diploid genome sequence of Candida albicans. [My Copy] Proc Natl Acad Sci U S A, Vol. 101, No. 19. (11 May 2004), pp. 7329-7334. by T. Jones, N. A. Federspiel, H. Chibana, et al.J. Dungan, S. Kalman, B. B. Magee, G. Newport, Y. R. Thorstenson, N. Agabian, P. T. Magee, R. W. Davis, S. Scherer posted to assembly genome haplotype by dakelley on 2009-03-27 20:04:31 as along with 2 people evaf Cortel
	A haplome alignment and reference sequence of the highly polymorphic Ciona savignyi genome [My Copy] Genome Biology, Vol. 8 (20 March 2007), R41. by Kerrin S. Small, Michael Brudno, Matthew M. Hill, Arend Sidow posted to assembly haplotype by dakelley on 2009-03-27 19:58:46 as along with 3 people adijr APRegier nhp
	Separation of nearly identical repeats in shotgun assemblies using defined nucleotide positions, DNPs [My Copy] Bioinformatics, Vol. 18, No. 3. (1 March 2002), pp. 379-388. by Martti T. Tammi, Erik Arner, Tom Britton, Bjorn Andersson posted to assembly post-assembly by dakelley on 2009-03-25 18:05:23 as along with 2 people n00c Neeperando
	DNPTrapper: an assembly editing tool for finishing and analysis of complex repeat regions [My Copy] BMC Bioinformatics, Vol. 7, No. 1. (2006), 155. by Erik Arner, Martti Tammi, Anh N. Tran, Ellen Kindlund, Bjorn Andersson posted to assembly post-assembly by dakelley on 2009-03-25 18:04:48 as along with 3 people n00c druvus azazello
	Assembly reconciliation [My Copy] Bioinformatics, Vol. 24, No. 1. (1 January 2008), pp. 42-45. by Aleksey V. Zimin, Douglas R. Smith, Granger Sutton, James A. Yorke posted to assembly post-assembly by dakelley on 2009-03-25 18:02:41 as along with 7 people darian n00c jsatkosk orzenil druvus Neeperando GustavoLacerda
	Genome assembly forensics: finding the elusive mis-assembly [My Copy] Genome Biology, Vol. 9, No. 3. (14 March 2008), R55. by Adam Phillippy, Michael Schatz, Mihai Pop posted to assembly post-assembly by dakelley on 2009-03-25 18:00:50 as along with 10 people and 1 group n00c Thaverkamp kiekyon jasontsai orzenil druvus fernan lp2 Neeperando GustavoLacerda DeNovoAssembly-SIMR
	Computability of Models for Sequence Assembly [My Copy] Algorithms in Bioinformatics In Algorithms in Bioinformatics (2007), pp. 289-301. by Paul Medvedev, Konstantinos Georgiou, Gene Myers, Michael Brudno posted to assembly theory by dakelley on 2009-03-25 05:05:54 as along with 2 people n00c niallhaslam
	The fragment assembly string graph [My Copy] Bioinformatics, Vol. 21, No. suppl_2. (1 September 2005), pp. ii79-85. by Eugene W. Myers posted to assembly theory by dakelley on 2009-03-25 05:05:02 as along with 6 people n00c idoerg mmartin azazello Neeperando isimpson
	Genomic mapping by fingerprinting random clones: A mathematical analysis [My Copy] Genomics, Vol. 2, No. 3. (April 1988), pp. 231-239. by Eric S. Lander, Michael S. Waterman posted to assembly theory by dakelley on 2009-03-25 05:02:54 as along with 1 person and 1 group ArtemPankin Khavkin's lab
	Diploid genome reconstruction of Ciona intestinalis and comparative analysis with Ciona savignyi [My Copy] Genome Res., Vol. 17, No. 7. (2007), pp. 1101-1110. by J. H. Kim, M. S. Waterman, L. M. Li posted to assembly haplotype by dakelley on 2009-03-17 20:50:13 as along with 2 people bpb nhp
	QSRA: a quality-value guided de novo short read assembler. [My Copy] BMC bioinformatics, Vol. 10, No. 1. (2009) by Douglas W. Bryant, Weng-Keen K. Wong, Todd C. Mockler posted to assembly short-reads by dakelley on 2009-03-17 05:12:24 as along with 11 people and 2 groups michaelbarton hzoltan GustavoLacerda GeeSharpMinor jfr n00c pengchy natstreet stajich idoerg druvus Bioinformatics Mycology
	ALLPATHS: De novo assembly of whole-genome shotgun microreads [My Copy] Genome Research, Vol. 18, No. 5. (13 May 2008), pp. 810-820. by Jonathan Butler, Iain MacCallum, Michael Kleber, et al.Ilya A. Shlyakhter, Matthew K. Belmonte, Eric S. Lander, Chad Nusbaum, David B. Jaffe posted to assembly short-reads by dakelley on 2009-02-23 19:59:31 as along with 23 people and 1 group ajsferreira n00c carlk jmanning2k APRegier pachorip jonilaserson operon thegoose2 natstreet AaronDarling mhz druvus stajich azazello hpaces tharris jwhitney iris42 Neeperando sharpton GustavoLacerda GeeSharpMinor Mycology
	Assembly of polymorphic genomes: algorithms and application to Ciona savignyi. [My Copy] Genome Res, Vol. 15, No. 8. (August 2005), pp. 1127-1135. by J. P. Vinson, D. B. Jaffe, K. O'Neill, et al.E. K. Karlsson, N. Stange-Thomann, S. Anderson, J. P. Mesirov, N. Satoh, Y. Satou, C. Nusbaum, B. Birren, J. E. Galagan, E. S. Lander posted to assembly haplotype by dakelley on 2009-02-11 16:38:36 as along with 5 people and 1 group adijr jwortman nhp Auger Neeperando Dead 60's
	Velvet: algorithms for de novo short read assembly using de Bruijn graphs. [My Copy] Genome research In Genome Research, Vol. 18, No. 5. (18 May 2008), pp. 821-829. by Daniel R. Zerbino, Ewan Birney posted to assembly de-bruijn short-reads by dakelley on 2009-02-11 16:37:37 as along with 45 people and 3 groups claire_jubin danbolser humburg ajsferreira vplagnol bedo jwhitney cthachuk hzoltan azazello ajbattle jmanning2k n00c carlk pachorip APRegier jbhiatt jonilaserson operon jahwa jsatkosk sandfire thegoose2 katholt robsyme djkt hpaces AaronDarling mhz idoerg jmcq dswan jasontsai acn druvus natstreet nmohelli stajich farhat iris42 tharris Neeperando sharpton GustavoLacerda gdb Bioinformatics DeNovoAssembly-SIMR Mycology
	De Novo Repeat Classification and Fragment Assembly [My Copy] Genome Research In Genome Research, Vol. 14, No. 9. (September 2004), pp. 1786-1796. by Paul A. Pevzner, Haixu Tang, Glenn Tesler posted to assembly de-bruijn duplications by dakelley on 2009-02-11 16:34:38 as along with 17 people claire_jubin n00c pachorip natstreet druvus brl briann operon timflutre azazello prajlondhe nedwards urgi yoanjacquemin dmc Ema Neeperando
	Toward simplifying and accurately formulating fragment assembly [My Copy] Journal of Computational Biology, Vol. 2 (1995), pp. 275-290. by Eugene W. Myers posted to assembly theory by dakelley on 2009-02-10 04:07:46 as
	De novo assembly using low-coverage short read sequence data from the rice pathogen Pseudomonas syringae pv. oryzae [My Copy] Genome research In Genome Research, Vol. 19, No. 2. (17 February 2009), pp. 294-305. by Josephine A. A. Reinhardt, David A. A. Baltrus, Marc T. T. Nishimura, William R. R. Jeck, Corbin D. D. Jones, Jeffery R. R. Dangl posted to assembly short-reads by dakelley on 2009-02-08 18:34:41 as along with 16 people and 2 groups GustavoLacerda darian n00c michaelbarton pachorip ThomasDOtto robsyme orzenil AaronDarling druvus Huub_odc usagi-kirin abizar acn jbhiatt hpaces SIMR bioinformatics Bioinformatics
	Gene-Boosted Assembly of a Novel Bacterial Genome from Very Short Reads [My Copy] PLoS Comput Biol In PLoS Comput Biol, Vol. 4, No. 9. (26 September 2008), e1000186. by Steven L. Salzberg, Daniel D. Sommer, Daniela Puiu, Vincent T. Lee posted to assembly short-reads by dakelley on 2009-02-06 22:47:52 as along with 17 people and 5 groups skembel n00c operon michaelbarton azazello Thaverkamp sconlan GustavoLacerda treangen natstreet antonkratz druvus vaulot djkt Katje stajich semrich BergmanLab Papers recommended by the Roscoff Plankton Group iSEEM microbiology_nijmegen Mycology

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assembly	65
short-reads	36
genetic-interactions	32
networks	27
metagenomics	26
review	24
duplications	24
clustering	20
structural_variation	18
haplotype	17
sequence-alignment	14
hmm	11
theory	10
modularity	10
gene-finding	10
genome_signatures	9
de-bruijn	9
gene-regulation	9
genome	7
network-evolution	7
epigenetics	7
classification	7
post-assembly	6
genomics	6
transcription	5
rna-seq	5
biology	5
crf	4
machine_learning	4
svm	4
cancer	4
statistics	4
comparative_assembly	4
scaffolding	4
base_calling	3
cow	3
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hpc	3
molecular-evolution	3
dimension_reduction	3
rna	2
scaffold	2
intro	2
class	2
chip-seq	2
ncrna	1
gene-annotation	1
genetic_algorithm	1
education	1
mobile_genetic_elements	1
genome-evolution	1
parallel	1
trimming	1
strings	1
virology	1
mcmc	1
prokaryote	1
mirna	1

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