danlea's library 76 articles Export

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	Formation of clustered DNA damage after high-LET irradiation: a review. [My Copy] Journal of radiation research, Vol. 49, No. 3. (May 2008), pp. 203-210. by M. Hada, A. G. Georgakilas posted to clustered damage dna radiation review by danlea on 2008-10-26 19:56:29 as
	Computational approach for determining the spectrum of DNA damage induced by ionizing radiation. [My Copy] Radiation research, Vol. 156, No. 5 Pt 2. (November 2001), pp. 577-583. by H. Nikjoo, P. O'Neill, W. E. Wilson, D. T. Goodhead posted to computational damage dna radiation by danlea on 2008-10-26 19:14:15 as along with 1 person dcolosi
	Integration from proteins to organs: the Physiome Project. [My Copy] Nature reviews. Molecular cell biology, Vol. 4, No. 3. (March 2003), pp. 237-243. by Peter J. Hunter, Thomas K. Borg posted to physiome by danlea on 2008-11-07 11:52:32 as along with 1 person bertelsen
	Radiobiological Modelling in Radiation Oncology [My Copy] (09 August 2007) posted to book radiation by danlea on 2008-10-26 15:44:08 as
	New insights on cell death from radiation exposure. [My Copy] The lancet oncology, Vol. 6, No. 7. (July 2005), pp. 520-528. by K. M. Prise, G. Schettino, M. Folkard, K. D. Held posted to radiation review by danlea on 2008-10-25 21:22:21 as along with 1 person ryonfa
	A radiation damage repair model for normal tissues. [My Copy] Physics in medicine and biology, Vol. 53, No. 13. (7 July 2008), pp. 3595-3608. by M. Partridge posted to damage radiation tissue by danlea on 2008-10-25 21:18:42 as along with 1 person beapen
	An imaging-based tumour growth and treatment response model: investigating the effect of tumour oxygenation on radiation therapy response [My Copy] Physics in Medicine and Biology, Vol. 53, No. 17. (7 September 2008), pp. 4471-4488. by Titz, Benjamin, Jeraj, Robert posted to oxygen radiation therapy tumour by danlea on 2008-10-25 21:07:42 as
	Modeling Human Physiology: The IUPS/EMBS Physiome Project [My Copy] Proceedings of the IEEE In Proceedings of the IEEE, Vol. 94, No. 4. (2006), pp. 678-691. by P. J. Hunter posted to physiome by danlea on 2008-11-07 11:55:36 as
	Fast Monte Carlo simulation of DNA damage formed by electrons and light ions [My Copy] Physics in Medicine and Biology, Vol. 51, No. 7. (2006), pp. 1693-1706. by V. A. Semenenko, R. D. Stewart posted to damage dna by danlea on 2008-10-26 21:44:20 as
	Lethal events in V79 cells irradiated by low-energy protons and correlations with distribution patterns of energy deposition, radical concentration and DNA damage [My Copy] Applied Radiation and Isotopes (03 July 2008) by M. Davidkova, P. Kundrat, V. Stepan, Z. Palajova, L. Judas posted to damage distribution dna radiation by danlea on 2008-10-26 19:44:22 as
	Simulation of single-species bacterial-biofilm growth using the glazier-graner-hogeweg model and the compucell3d modeling environment. [My Copy] Mathematical biosciences and engineering : MBE, Vol. 5, No. 2. (1 April 2008), pp. 355-388. by N. J. Poplawski, A. Shirinifard, M. Swat, J. A. Glazier posted to cpm by danlea on 2008-10-26 19:10:54 as
	Phosphatases, DNA damage checkpoints and checkpoint deactivation. [My Copy] Cell cycle (Georgetown, Tex.), Vol. 6, No. 24. (December 2007), pp. 3058-3064. by J. Heideker, E. T. Lis, F. E. Romesberg posted to checkpoint damage dna by danlea on 2008-10-22 11:30:17 as along with 1 person guhjy
	Recurrent Initiation: A Mechanism for Triggering p53 Pulses in Response to DNA Damage [My Copy] Molecular Cell, Vol. 30, No. 3. (9 May 2008), pp. 277-289. by Eric Batchelor, Caroline S. Mock, Irun Bhan, Alexander Loewer, Galit Lahav posted to damage dna p53 pathways by danlea on 2008-10-22 11:07:44 as along with 2 people renatomilani tibbitts
	The DNA damage response pathways: at the crossroad of protein modifications. [My Copy] Cell Res, Vol. 18, No. 1. (January 2008), pp. 8-16. by M. S. Huen, J. Chen posted to damage dna pathways protein review by danlea on 2008-10-22 11:04:17 as along with 2 people guhjy zhlei
	The IUPS human physiome project [My Copy] Pflügers Archiv European Journal of Physiology, Vol. 445, No. 1. (1 October 2002), pp. 1-9. by Peter Hunter, Peter Robbins, Denis Noble posted to physiome by danlea on 2008-11-07 12:02:20 as along with 1 person vgurev
	A strategy for integrative computational physiology. [My Copy] Physiology (Bethesda, Md.), Vol. 20 (October 2005), pp. 316-325. by Peter Hunter, Poul Nielsen posted to physiome by danlea on 2008-11-07 12:00:20 as along with 1 person bertelsen
	Processing of a complex multiply damaged DNA site by human cell extracts and purified repair proteins [My Copy] Nucl. Acids Res., Vol. 33, No. 1. (12 January 2005), pp. 260-271. by Grégory Eot-Houllier, Séverine Eon-Marchais, Didier Gasparutto, Evelyne Sage posted to clustered damage dna repair by danlea on 2008-10-31 12:00:37 as
	Chromatin loops are responsible for higher counts of small DNA fragments induced by high-LET radiation, while chromosomal domains do not affect the fragment sizes [My Copy] International Journal of Radiation Biology, Vol. 82, No. 4. (April 2006), pp. 293-305. by Ponomarev, Artem, Cucinotta, Francis posted to damage dna radiation by danlea on 2008-10-26 21:50:46 as
	Low-let-induced radioprotective mechanisms within a stochastic two-stage cancer model. [My Copy] Dose-response : a publication of International Hormesis Society, Vol. 3, No. 4. (2005), pp. 508-518. by H. Schöllnberger, R. D. Stewart, R. E. Mitchel posted to damage dna hormesis radiation by danlea on 2008-10-26 21:42:35 as
	An Investigation into the Mechanisms of DNA Strand Breakage by Direct Ionization of Variably Hydrated Plasmid DNA [My Copy] J. Phys. Chem. B, Vol. 110, No. 51. (28 December 2006), pp. 26286-26291. by S. Purkayastha, J. R. Milligan, W. A. Bernhard posted to damage dna radiation water by danlea on 2008-10-26 21:33:24 as
	Image-Based Modeling Reveals Dynamic Redistribution of DNA Damage into Nuclear Sub-Domains [My Copy] PLoS Comput Biol, Vol. 3, No. 8. (2007), e155. by Sylvain V. Costes, Artem Ponomarev, James L. Chen, David Nguyen, Francis A. Cucinotta, Mary H. Barcellos-Hoff posted to damage distribution dna by danlea on 2008-10-26 20:20:47 as
	Which DNA Damage is Likely to be Relevant in Hormetic Responses? [My Copy] Dose-response : a publication of International Hormesis Society, Vol. 6, No. 2. (2008), pp. 184-195. by W. A. Bernhard, S. Purkayastha, J. R. Milligan posted to damage dna hormesis radiation by danlea on 2008-10-26 20:16:56 as
	Monte Carlo simulation of DNA damage induction by x-rays and selected radioisotopes. [My Copy] Physics in medicine and biology, Vol. 53, No. 1. (7 January 2008), pp. 233-244. by Y. Hsiao, R. D. Stewart posted to damage dna radiation by danlea on 2008-10-26 20:11:41 as
	Non-problematic risks from low-dose radiation-induced DNA damage clusters. [My Copy] Dose-response : a publication of International Hormesis Society, Vol. 6, No. 1. (2008), pp. 30-52. by D. P. Hayes posted to clustered damage dna by danlea on 2008-10-26 20:08:32 as
	Nanoscale Detection of Ionizing Radiation Damage to DNA by Atomic Force Microscopy [My Copy] Small, Vol. 4, No. 2. (2008), pp. 288-294. by Changhong Ke, Yong Jiang, Piotr A. Mieczkowski, Garrett G. Muramoto, John P. Chute, Piotr E. Marszalek posted to damage dna radiation by danlea on 2008-10-26 20:06:02 as
	Quantitative analysis of isolated and clustered DNA damage induced by gamma-rays, carbon ion beams, and iron ion beams. [My Copy] Journal of radiation research, Vol. 49, No. 2. (March 2008), pp. 133-146. by H. Terato, R. Tanaka, Y. Nakaarai, et al.T. Nohara, Y. Doi, S. Iwai, R. Hirayama, Y. Furusawa, H. Ide posted to clustered damage dna radiation by danlea on 2008-10-26 20:03:12 as
	Low Energy Electron Induced DNA Damage: Effects of Terminal Phosphate and Base Moieties on the Distribution of Damage [My Copy] J. Am. Chem. Soc., Vol. 130, No. 17. (30 April 2008), pp. 5612-5613. by Zejun Li, Yi Zheng, Pierre Cloutier, Léon Sanche, Richard J. Wagner posted to damage distribution dna by danlea on 2008-10-26 19:59:40 as
	Low-energy electron diffraction and induced damage in hydrated DNA [My Copy] The Journal of Chemical Physics, Vol. 128, No. 19. (2008) by Thomas M. Orlando, Doogie Oh, Yanfeng Chen, Alexandr B. Aleksandrov posted to damage dna water by danlea on 2008-10-26 19:52:07 as
	Moving Forward Moving Backward: Directional Sorting of Chemotactic Cells due to Size and Adhesion Differences [My Copy] PLoS Computational Biology, Vol. 2, No. 6. (1 June 2006), e56. by J. K$ä$fer, P. Hogeweg, A. F. Mar$é$e posted to cpm by danlea on 2008-10-26 17:25:34 as along with 2 people LuLi nicholasflann
	On cellular automaton approaches to modeling biological cells [My Copy] (2002) by M. Alber, M. Kiskowski, J. Glazier, Y. Jiang posted to cpm by danlea on 2008-10-26 17:20:00 as along with 2 people and 2 groups mattjb m_j ComplexAdaptiveSystems DSTO-CAS
	Vasculogenic mimicry and tumour-cell plasticity: lessons from melanoma [My Copy] Nat Rev Cancer, Vol. 3, No. 6. (June 2003), pp. 411-421. by Mary J. Hendrix, Elisabeth A. Seftor, Angela R. Hess, Richard E. Seftor posted to angiogenesis tumour vasculogenesis by danlea on 2008-10-26 15:26:49 as
	Single-Cell-Based Models in Biology and Medicine (Mathematics and Biosciences in Interaction) (Mathematics and Biosciences in Interaction) [My Copy] (17 August 2007) posted to cpm by danlea on 2008-10-26 00:09:07 as
	Patterning of embryonic blood vessels [My Copy] Developmental Dynamics, Vol. 228, No. 1. (2003), pp. 21-29. by Amanda C. Larue, Vladimir A. Mironov, Scott W. Argraves, András Czirók, Paul A. Fleming, Christopher J. Drake posted to cpm vasculogenesis by danlea on 2008-10-26 00:01:22 as
	Simulating convergent extension by way of anisotropic differential adhesion [My Copy] Journal of Theoretical Biology, Vol. 222, No. 2. (21 May 2003), pp. 247-259. by Mark Zajac, Gerald L. Jones, James A. Glazier posted to cpm by danlea on 2008-10-25 23:58:48 as
	Tumor Response to Ionizing Radiation Combined with Antiangiogenesis or Vascular Targeting Agents: Exploring Mechanisms of Interaction [My Copy] Clin Cancer Res, Vol. 9, No. 6. (1 June 2003), pp. 1957-1971. by Phyllis Wachsberger, Randy Burd, Adam P. Dicker posted to angiogenesis radiation by danlea on 2008-10-25 23:57:33 as
	Design patterns for generic object-oriented scientific software [My Copy] In ICSE05, Twenty-Seventh International Conference on Software Engineering, preprint athttp://www.nd.edu/˜tcickovs/icse.pdf (2005) by Trevor Cickovski posted to programming by danlea on 2008-10-25 23:50:47 as
	Tumor-induced endothelial cell activation: role of vascular endothelial growth factor [My Copy] Am J Physiol Cell Physiol, Vol. 286, No. 5. (1 May 2004), pp. C1170-1176. by Angeles M. Castilla, Fernando Neria, Guadalupe Renedo, et al.Daniel S. Pereira, Francisco R. Gonzalez-Pacheco, Sonsoles Jimenez, Paloma Tramon, J. J. P. Deudero, Alvarez M. V. Arroyo, Susana Yague, Carlos Caramelo posted to angiogenesis by danlea on 2008-10-25 23:48:41 as
	Modeling Somatic Evolution in Tumorigenesis. [My Copy] PLoS Comput Biol, Vol. 2, No. 8. (18 August 2006) by Sabrina L. L. Spencer, Ryan A. A. Gerety, Kenneth J. J. Pienta, Stephanie Forrest posted to model tumour by danlea on 2008-10-25 23:38:02 as along with 3 people and 2 groups kentsis jfr mattjb ComplexAdaptiveSystems DSTO-CAS
	On multiscale approaches to three-dimensional modelling of morphogenesis. [My Copy] Journal of the Royal Society, Interface / the Royal Society, Vol. 2, No. 3. (22 June 2005), pp. 237-253. by R. Chaturvedi, C. Huang, B. Kazmierczak, et al.T. Schneider, J. A. Izaguirre, T. Glimm, H. G. Hentschel, J. A. Glazier, S. A. Newman, M. S. Alber posted to cpm multiscale by danlea on 2008-10-25 23:31:32 as along with 1 person Doug
	Solving the advection-diffusion equations in biological contexts using the cellular Potts model [My Copy] Physical Review E (Statistical, Nonlinear, and Soft Matter Physics), Vol. 72, No. 4. (2005) by Debasis Dan, Chris Mueller, Kun Chen, James A. Glazier posted to cpm by danlea on 2008-10-25 23:30:32 as
	A mathematical model of breast cancer development, local treatment and recurrence [My Copy] Journal of Theoretical Biology, Vol. 246, No. 2. (21 May 2007), pp. 245-259. by H. Enderling, M. Chaplain, A. Anderson, J. Vaidya posted to breast model tissue by danlea on 2008-10-25 23:22:23 as
	A multiscale mathematical model of cancer, and its use in analyzing irradiation therapies [My Copy] Theoretical Biology and Medical Modelling, Vol. 3, No. 1. (2006) by Benjamin Ribba, Thierry Colin, Santiago Schnell posted to multiscale radiation tissue by danlea on 2008-10-25 23:17:20 as along with 3 people and 1 group dolchan schnell epigenetics IU_Informatics_CX
	An age-and-cyclin-structured cell population model for healthy and tumoral tissues [My Copy] Journal of Mathematical Biology, Vol. 57, No. 1. (July 2008), pp. 91-110. by Bekkal Brikci, Fadia, Clairambault, et al. Jean, Ribba, Benjamin, Perthame, Benoit posted to tissue by danlea on 2008-10-25 23:16:05 as
	Improving the realism of the cellular Potts model in simulations of biological cells [My Copy] Physica A: Statistical Mechanics and its Applications, Vol. 329, No. 3-4. (15 November 2003), pp. 451-458. by N. Ouchi, J. Glazier, J. Rieu, A. Upadhyaya, Y. Sawada posted to cpm by danlea on 2008-10-25 23:12:35 as along with 2 people wei tuck
	Multimodality molecular imaging of tumor angiogenesis. [My Copy] Journal of nuclear medicine : official publication, Society of Nuclear Medicine, Vol. 49 Suppl 2 (June 2008) by W. Cai, X. Chen posted to angiogenesis by danlea on 2008-10-25 23:06:15 as along with 1 person xtizon
	Dose-rate effects in targeted radiotherapy [My Copy] Physics in Medicine and Biology, Vol. 41, No. 10. (1996), pp. 1871-1884. by R. G. Dale posted to radiation by danlea on 2008-10-25 22:53:51 as
	Cytometry in cell necrobiology: Analysis of apoptosis and accidental cell death (necrosis) [My Copy] Cytometry, Vol. 27, No. 1. (1997), pp. 1-20. by Zbigniew Darzynkiewicz, Gloria Juan, Xun Li, Wojciech Gorczyca, Tomoyuki Murakami, Frank Traganos posted to apoptosis necrosis by danlea on 2008-10-25 22:52:17 as
	Mathematical modelling of the response of tumour cells to radiotherapy [My Copy] Nuclear Instruments and Methods in Physics Research Section B: Beam Interactions with Materials and Atoms (April 2002), pp. 210-215. by N. F. Kirkby, N. G. Burnet, D. B. F. Faraday posted to radiation by danlea on 2008-10-25 22:50:45 as
	Clustered DNA Damage Leads to Complex Genetic Changes in Irradiated Human Cells [My Copy] Cancer Res, Vol. 62, No. 21. (1 November 2002), pp. 6263-6269. by Belinda K. Singleton, Carol S. Griffin, John Thacker posted to clustered damage dna by danlea on 2008-10-25 22:45:25 as
	Dynamic mechanisms of blood vessel growth [My Copy] Nonlinearity, Vol. 19, No. 1. (2006), pp. C1-C10. by Roeland M. Merks, James A. Glazier posted to angiogenesis by danlea on 2008-10-25 22:27:52 as

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damage	27
radiation	26
dna	25
cpm	17
tumour	10
angiogenesis	5
clustered	5
physiome	4
tissue	4
vasculogenesis	4
distribution	3
multiscale	3
oxygen	3
review	3
automaton	2
cell	2
cellular	2
cycle	2
hormesis	2
model	2
pathways	2
repair	2
therapy	2
water	2
algorithm	1
apoptosis	1
book	1
breast	1
checkpoint	1
computational	1
microenvironment	1
necrosis	1
p53	1
programming	1
protein	1

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