danmaclean's library 33 articles Export

	Genome sequence and analysis of the Irish potato famine pathogen Phytophthora infestans [My Copy] Nature, Vol. 461, No. 7262. (09 September 2009), pp. 393-398. by Brian J. Haas, Sophien Kamoun, Michael C. Zody, et al.Rays H. Y. Jiang, Robert E. Handsaker, Liliana M. Cano, Manfred Grabherr, Chinnappa D. Kodira, Sylvain Raffaele, Trudy Torto-Alalibo, Tolga O. Bozkurt, Audrey M. V. Ah-Fong, Lucia Alvarado, Vicky L. Anderson, Miles R. Armstrong, Anna Avrova, Laura Baxter, Jim Beynon, Petra C. Boevink, Stephanie R. Bollmann, Jorunn I. B. Bos, Vincent Bulone, Guohong Cai, Cahid Cakir, James C. Carrington, Megan Chawner, Lucio Conti, Stefano Costanzo, Richard Ewan, Noah Fahlgren, Michael A. Fischbach, Johanna Fugelstad, Eleanor M. Gilroy, Sante Gnerre, Pamela J. Green, Laura J. Grenville-Briggs, John Griffith, Niklaus J. Grunwald, Karolyn Horn, Neil R. Horner, Chia-Hui Hu, Edgar Huitema, Dong-Hoon Jeong, Alexandra M. E. Jones, Jonathan D. G. Jones, Richard W. Jones, Elinor K. Karlsson, Sridhara G. Kunjeti, Kurt Lamour, Zhenyu Liu, LiJun Ma, Daniel MacLean, Marcus C. Chibucos, Hayes McDonald, Jessica McWalters, Harold J. G. Meijer, William Morgan, Paul F. Morris, Carol A. Munro, Keith OâNeill, Manuel Ospina-Giraldo, Andres Pinzon, Leighton Pritchard, Bernard Ramsahoye, Qinghu Ren, Silvia Restrepo, Sourav Roy, Ari Sadanandom, Alon Savidor, Sebastian Schornack, David C. Schwartz, Ulrike D. Schumann, Ben Schwessinger, Lauren Seyer, Ted Sharpe, Cristina Silvar, Jing Song, David J. Studholme, Sean Sykes, Marco Thines, Peter J. I. van de Vondervoort, Vipaporn Phuntumart, Stephan Wawra, Rob Weide, Joe Win, Carolyn Young, Shiguo Zhou, William Fry, Blake C. Meyers, Pieter van West, Jean Ristaino, Francine Govers, Paul R. J. Birch, Stephen C. Whisson, Howard S. Judelson, Chad Nusbaum posted to sequencing genomics bioinformatics by danmaclean on 2009-09-10 11:16:10 as along with 10 people and 3 groups stajich kiekyon diamantis bcondon ArtemPankin ppgardne jmanning2k dbk tomhebbron rschulz Mycology Khavkin's lab Journal picks
	From gene expression to gene regulatory networks in Arabidopsis thaliana [My Copy] BMC Systems Biology, Vol. 3, No. 1. (3 September 2009), 85. by Chris Needham, Iain Manfield, Andrew Bulpitt, Philip Gilmartin, David Westhead posted to transcriptome systems networks gene by danmaclean on 2009-09-09 15:24:07 as along with 9 people idonaldson pengchy Borelli ptrobajo TRHvidsten rmk barriot natstreet druvus
	Sequence features associated with microRNA strand selection in humans and flies. [My Copy] BMC genomics, Vol. 10, No. 1. (4 September 2009), 413. by Hai Yang Y. Hu, Zheng Yan, Ying Xu, et al.Hao Hu, Corinna Menzel, Yan Hong H. Zhou, Wei Chen, Philipp Khaitovich posted to mirna by danmaclean on 2009-09-09 15:08:22 as along with 4 people and 1 group heliopais cisevol samgj ealloza microRNA
	Reciprocal regulation of microRNA and mRNA profiles in neuronal development and synapse formation [My Copy] BMC Genomics, Vol. 10, No. 1. (8 September 2009), 419. by Sergei Manakov, Seth Grant, Anton Enright posted to target_recognition mirna by danmaclean on 2009-09-09 15:05:28 as along with 3 people and 2 groups akundaje heliopais daforerog microRNA Gene Regulation
	ChIP\|[ndash]\|seq: advantages and challenges of a maturing technology [My Copy] Nature Reviews Genetics, Vol. 10, No. 10. (08 September 2009), pp. 669-680. by Peter J. Park posted to chipseq by danmaclean on 2009-09-09 15:04:02 as along with 24 people and 6 groups akakak hzoltan dchughes RyuOgawa heliopais giovenko inesdesantiago pradiptaray dakelley clearbluespring akundaje rdiaz kimorley leliavski humburg reyez qayub fenghezi tonamswish robertrentzsch polivares idonaldson rschulz cvaldes Journal picks Orengo Group Journal Picks JLab BergmanLab CTCF Chromatin
	Assisted assembly: how to improve a de novo genome assembly by using related species [My Copy] Genome Biology, Vol. 10, No. 8. (2009), R88. by Sante Gnerre, Eric Lander, Kerstin L. Toh, David Jaffe posted to genome assembler by danmaclean on 2009-09-01 11:34:36 as along with 17 people and 2 groups operon fstrozzi kiekyon torfinnnome dakelley jamselem err129 djkt darian APRegier thegoose stajich natstreet neils druvus GustavoLacerda avilella Mycology Journal picks
	A reliable measure of similarity based on dependency for short time series: an application to gene expression networks. [My Copy] BMC Bioinformatics, Vol. 10, No. 1. (2009), 270. by Monica Campiteli, Frederico Soriani, Iran Malavazi, Osame Kinouchi, Carlos Pereira, Gustavo Goldman posted to networks microarray gene by danmaclean on 2009-09-01 11:29:39 as along with 4 people and 1 group rdiaz coffeerv TRHvidsten sotacam Gene Regulation
	Personalized copy number and segmental duplication maps using next-generation sequencing. [My Copy] Nature genetics, Vol. 41, No. 10. (30 October 2009), pp. 1061-1067. by Can Alkan, Jeffrey M. Kidd, Tomas Marques-Bonet, et al.Gozde Aksay, Francesca Antonacci, Fereydoun Hormozdiari, Jacob O. Kitzman, Carl Baker, Maika Malig, Onur Mutlu, S. Cenk Sahinalp, Richard A. Gibbs, Evan E. Eichler posted to throughput snps short sequencing high bioinformatics alignment by danmaclean on 2009-09-01 11:23:10 as along with 30 people and 1 group ongenetics chvlyl leemachado daed gbenson n00c bozdagd dakelley sbmontgomery eshirdel merpublic shyamsg scmelton qayub natstreet fenghezi Annab djkt nuin xingxu jamesmorris rdiaz brant torfinnnome jandot pkonings daforerog frohike rschulz gangcai Journal picks
	Network-assisted protein identification and data interpretation in shotgun proteomics [My Copy] Molecular Systems Biology, Vol. 5 (18 August 2009) by Jing Li, Lisa J. Zimmerman, Byung-Hoon Park, David L. Tabb, Daniel C. Liebler, Bing Zhang posted to proteomics graphs by danmaclean on 2009-08-19 16:59:00 as along with 4 people ptrobajo reyez brianb biomcgary
	Control and signal processing by transcriptional interference [My Copy] Mol Syst Biol, Vol. 5 (18 August 2009) by Antoine Buetti-Dinh, Rosemarie Ungricht, Janos Z. Kelemen, Chetak Shetty, Prasuna Ratna, Attila Becskei posted to transcription systems by danmaclean on 2009-08-19 16:42:24 as along with 1 person jjray
	Improved base calling for the Illumina Genome Analyzer using machine learning strategies [My Copy] Genome Biology, Vol. 10, No. 8. (14 August 2009), R83. by Martin Kircher, Udo Stenzel, Janet Kelso posted to throughput sequencing high bioinformatics by danmaclean on 2009-08-19 16:35:30 as along with 7 people and 1 group seb1 djkt reyez fpattyn ppgardne n00c druvus Journal picks
	Targeted capture and massively parallel sequencing of 12 human exomes. [My Copy] Nature, Vol. 461, No. 7261. (10 September 2009), pp. 272-276. by Sarah B. Ng, Emily H. Turner, Peggy D. Robertson, et al.Steven D. Flygare, Abigail W. Bigham, Choli Lee, Tristan Shaffer, Michelle Wong, Arindam Bhattacharjee, Evan E. Eichler, Michael Bamshad, Deborah A. Nickerson, Jay Shendure posted to throughput sequencing high by danmaclean on 2009-08-19 16:30:36 as along with 23 people and 1 group seb1 hzoltan liqbbi chvlyl ongenetics psique fenghezi n00c dswan jmanning2k torfinnnome GeeSharpMinor pkonings neils djkt daforerog PabloMarin stubrown xingxu vplagnol druvus jandot frohike Journal picks
	A fast and efficient gene-network reconstruction method from multiple over-expression experiments [My Copy] BMC Bioinformatics, Vol. 10, No. 1. (17 August 2009), 253. by Dejan Stokic, Rudolf Hanel, Stefan Thurner posted to transcriptome regulatory network gene by danmaclean on 2009-08-19 16:22:20 as along with 5 people sotacam rdiaz barriot TRHvidsten fpattyn
	The type III secretion system of Pseudomonas aeruginosa: infection by injection [My Copy] Nat Rev Micro, Vol. 7, No. 9. (September 2009), pp. 654-665. by Alan R. Hauser posted to ttss by danmaclean on 2009-08-14 09:40:14 as
	Application of massive parallel sequencing to whole genome SNP discovery in the porcine genome [My Copy] BMC Genomics, Vol. 10, No. 1. (2009), 374. by Andreia Amaral, Hendrik J. Megens, Hindrik Kerstens, et al.Henri Heuven, Bert Dibbits, Richard Crooijmans, Johan den Dunnen, Martien Groenen posted to throughput snps sequencing high genomics by danmaclean on 2009-08-12 15:59:13 as along with 2 people natstreet jsatkosk
	Computational identification of hepatitis C virus associated microRNA-mRNA regulatory modules in human livers. [My Copy] BMC genomics, Vol. 10, No. 1. (11 August 2009), 373. by Xinxia Peng, Yu Li, Kathie-Anne A. Walters, et al.Elizabeth R. Rosenzweig, Sharon L. Lederer, Lauri D. Aicher, Sean Proll, Michael G. Katze posted to regulatory modules mirna bioinformatics by danmaclean on 2009-08-11 20:10:43 as along with 4 people and 1 group ptrobajo heliopais guhjy frohike microRNA
	Microfluidic devices for measuring gene network dynamics in single cells [My Copy] Nat Rev Genet, Vol. 10, No. 9. (11 August 2009), pp. 628-638. by Matthew R. Bennett, Jeff Hasty posted to systems networks methods by danmaclean on 2009-08-11 15:07:16 as along with 5 people pkm abhishek_tiwari boko4ikameto megraw jbhiatt
	Insights from genomic profiling of transcription factors [My Copy] Nature Reviews Genetics, Vol. 10, No. 9. (11 August 2009), pp. 605-616. by Peggy J. Farnham posted to transcriptome transcription genomics factors by danmaclean on 2009-08-11 15:04:38 as along with 17 people and 2 groups heliopais inesdesantiago fenghezi nklee samanthacooper fpattyn druvus frohike stubrown qayub megraw TRHvidsten mkiyer ericrpaquet ilyashl jbhiatt idonaldson Journal picks Chinnaiyan Lab
	Digital transcriptome profiling using selective hexamer priming for cDNA synthesis. [My Copy] Nature methods, Vol. 6, No. 9. (9 September 2009), pp. 647-649. by Christopher D. Armour, John C. Castle, Ronghua Chen, et al.Tomas Babak, Patrick Loerch, Stuart Jackson, Jyoti K. Shah, John Dey, Carol A. Rohl, Jason M. Johnson, Christopher K. Raymond posted to transcriptome digital by danmaclean on 2009-08-11 15:02:24 as along with 2 people and 1 group sconlan gbloeb Bioinformatics
	BreakDancer: an algorithm for high-resolution mapping of genomic structural variation [My Copy] Nature Methods, Vol. 6, No. 9. (09 August 2009), pp. 677-681. by Ken Chen, John W. Wallis, Michael D. McLellan, et al.David E. Larson, Joelle M. Kalicki, Craig S. Pohl, Sean D. McGrath, Michael C. Wendl, Qunyuan Zhang, Devin P. Locke, Xiaoqi Shi, Robert S. Fulton, Timothy J. Ley, Richard K. Wilson, Li Ding, Elaine R. Mardis posted to polymorphisms by danmaclean on 2009-08-11 14:53:44 as along with 12 people and 1 group Leaflet heliopais stubrown dakelley fenghezi daed natstreet druvus sitalange qayub gdb jasontsai Journal picks
	Accurate determination of microbial diversity from 454 pyrosequencing data. [My Copy] Nature methods, Vol. 6, No. 9. (09 September 2009), pp. 639-641. by Christopher Quince, Anders Lanzén, Thomas P. Curtis, et al.Russell J. Davenport, Neil Hall, Ian M. Head, L. Fiona Read, William T. Sloan posted to throughput sequencing methods metagenomics high by danmaclean on 2009-08-11 14:51:25 as along with 7 people and 2 groups halinat kinestetika jgill jonilaserson skembel druvus orzenil iSEEM Bioinformatics
	Single-molecule sequencing of an individual human genome [My Copy] Nature Biotechnology, Vol. 27, No. 9. (10 August 2009), pp. 847-850. by Dmitry Pushkarev, Norma F. Neff, Stephen R. Quake posted to high sequencing throughput by danmaclean on 2009-08-11 09:34:13 as along with 25 people and 3 groups JamesBarger n00c ethanmj MurphysLab leliavski inesdesantiago fenghezi megraw kintoki neils daforerog gangcai mqbphcw3 jmanning2k jonilaserson druvus alexknight qayub natstreet mtagaya kinestetika guhjy installe psique SeaBird Journal picks Shared Literature Resource of the Microbial Fitness Group - MPI Bremen Bioinformatics
	SHOREmap: simultaneous mapping and mutation identification by deep sequencing [My Copy] Nat Meth, Vol. 6, No. 8. (August 2009), pp. 550-551. by Korbinian Schneeberger, Stephan Ossowski, Christa Lanz, et al.Trine Juul, Annabeth H. Petersen, Kare L. Nielsen, Jan-Elo Jorgensen, Detlef Weigel, Stig U. Andersen posted to alignment genome high polymorphisms sequencing througput by danmaclean on 2009-08-09 20:14:58 as along with 1 person jasontsai
	MicroPC (muPC): A comprehensive resource for predicting and comparing plant microRNAs [My Copy] BMC Genomics, Vol. 10, No. 1. (2009), 366. by Wuttichai Mhuantong, Duangdao Wichadakul posted to srna by danmaclean on 2009-08-07 09:22:02 as along with 4 people and 2 groups heliopais megraw natstreet druvus microRNA Gene Regulation
	JBrowse: A next-generation genome browser [My Copy] Genome Research, Vol. 19, No. 9. (1 September 2009), pp. 1630-1638. by Mitchell E. Skinner, Andrew V. Uzilov, Lincoln D. Stein, Christopher J. Mungall, Ian H. Holmes posted to no-tag by danmaclean on 2009-07-03 15:40:29 as along with 28 people and 2 groups hzoltan darian mkiyer daforerog n00c torfinnnome fenghezi djkt WXuan Zephyrus idonaldson pkonings inesdesantiago jcbarret jamselem aprasad urgi polivares cassj guhjy giovanni druvus natstreet fpattyn cisevol timhubbard operon neils BergmanLab Journal picks
	The evolution of molecular biology into systems biology [My Copy] Nat Biotech, Vol. 22, No. 10. (October 2004), pp. 1249-1252. by Hans V. Westerhoff, Bernhard O. Palsson posted to biology systems by danmaclean on 2009-06-19 14:00:01 as along with 10 people and 1 group thomaskelder natstreet druvus mikel_egana fgibson dswan dullhunk tny karthikram HugoMarcelo Neoscientists
	Practical application of ontologies to annotate and analyse large scale raw mouse phenotype data. [My Copy] BMC bioinformatics, Vol. 10 Suppl 5, No. Suppl 5. (2009), S2. by T. Beck, H. Morgan, A. Blake, S. Wells, J. M. Hancock, A. M. Mallon posted to ontology by danmaclean on 2009-06-01 11:44:48 as along with 4 people guhjy mikel_egana fgibson dullhunk
	Hypergraphs and Cellular Networks [My Copy] PLoS Comput Biol, Vol. 5, No. 5. (29 May 2009), e1000385. by Steffen Klamt, Utz-Uwe Haus, Fabian Theis posted to bioinformatics graphs neworks by danmaclean on 2009-06-01 10:35:44 as along with 11 people rdiaz ptrobajo poirel apocapoc trfield uuh fgibson dswan tmmurali Borelli shikin
	Getting started in computational mass spectrometry-based proteomics. [My Copy] PLoS computational biology, Vol. 5, No. 5. (29 May 2009), e1000366. by Olga Vitek posted to bioinformatics proteomics by danmaclean on 2009-06-01 10:33:16 as along with 8 people jfr eliasman ptrobajo nuin kiekyon sjcockell renatomilani fgibson
	The Plant-Associated Microbe Gene Ontology (PAMGO) Consortium: community development of new Gene Ontology terms describing biological processes involved in microbe-host interactions [My Copy] BMC Microbiology, Vol. 9, No. Suppl 1. (2009), S1. by Trudy T. Alalibo, Candace Collmer, Michelle G. Giglio posted to gene ontology by danmaclean on 2009-05-31 18:01:21 as along with 1 group Bioinformatics
	Fast and accurate short read alignment with Burrows-Wheeler transform. [My Copy] Bioinformatics (Oxford, England), Vol. 25, No. 14. (15 July 2009), pp. 1754-1760. by Heng Li, Richard Durbin posted to assembler read short by danmaclean on 2009-05-28 11:44:18 as along with 33 people and 4 groups lianping hzoltan cthachuk maren bozdagd adijr heliopais jmanning2k GustavoLacerda stubrown jessopher guhjy katholt mkiyer jmcq idonaldson michaelbarton polivares darian orzenil cassj inesdesantiago TRHvidsten djkt operon ghattem n00c ppgardne nuin rschulz natstreet druvus humburg BergmanLab SIMR bioinformatics Bioinformatics Journal picks
	DiProDB: a database for dinucleotide properties [My Copy] Nucl. Acids Res., Vol. 37, No. suppl_1. (1 January 2009), pp. D37-40. by Maik Friedel, Swetlana Nikolajewa, Jurgen Suhnel, Thomas Wilhelm posted to no-tag by danmaclean on 2009-05-26 21:51:20 as along with 1 person and 1 group lptolik Bioinformatics
	A Survey on Training Algorithms for Support Vector Machine Classifiers [My Copy] Networked Computing and Advanced Information Management, International Conference on, Vol. 1 (2008), pp. 123-128. by Guosheng Wang posted to msc svm by danmaclean on 2009-05-25 22:11:33 as along with 1 person and 1 group lbustio Bioinformatics

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sequencing	8
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danmaclean's library 33 articles Export

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