darian's library 306 articles Export

	TeXshade: shading and labeling of multiple sequence alignments using LaTeX2e [My Copy] Bioinformatics, Vol. 16, No. 2. (1 February 2000), pp. 135-139. by Eric Beitz posted to multiple-alignment latex by darian on 2009-11-13 15:35:11 as along with 3 people jwm BioNica heliopais
	Multiple Sequence Alignment Using ClustalW and ClustalX [My Copy] Current Protocols in Bioinformatics (January 2003) by Julie D. Thompson, Toby, Des G. Higgins posted to multiple-alignment by darian on 2009-11-13 15:31:11 as
	CA8 Mutations Cause a Novel Syndrome Characterized by Ataxia and Mild Mental Retardation with Predisposition to Quadrupedal Gait [My Copy] PLoS Genet, Vol. 5, No. 5. (22 May 2009), e1000487. by Seval Türkmen, Gao Guo, Masoud Garshasbi, et al.Katrin Hoffmann, Amjad J. Alshalah, Claudia Mischung, Andreas Kuss, Nicholas Humphrey, Stefan Mundlos, Peter N. Robinson posted to sequence_logo mental_retardation by darian on 2009-11-13 15:23:22 as along with 2 people daforerog Schmidtc
	Mining SNPs from DNA Sequence Data; Computational Approaches to SNP Discovery and Analysis [My Copy] Single Nucleotide Polymorphisms, Vol. 578 (2009), pp. 73-91. by Jan Oeveren, Antoine Janssen posted to snps by darian on 2009-11-11 14:24:32 as along with 2 people sandfire n00c
	Simultaneous alignment of short reads against multiple genomes [My Copy] Genome Biology, Vol. 10, No. 9. (17 September 2009), R98. by Korbinian Schneeberger, Jorg Hagmann, Stephan Ossowski, et al.Norman Warthmann, Sandra Gesing, Oliver Kohlbacher, Detlef Weigel posted to readmapper applications by darian on 2009-11-11 10:40:57 as along with 10 people maren megraw djkt fstrozzi jamselem justinhjohnson torfinnnome reyez natstreet druvus
	Velvet: Algorithms for de novo short read assembly using de Bruijn graphs [My Copy] Genome Research, Vol. 18 (2008), pp. 821-829. by Daniel R. Zerbino, Ewan Birney posted to next-generation-sequencing assembler by darian on 2009-11-11 10:38:50 as along with 1 person orzenil
	Celera sequence assembler [My Copy] by Celera Genomics posted to next-generation-sequencing assembler applications by darian on 2009-11-11 10:38:22 as along with 1 person orzenil
	Short-Read Sequencing Technologies for Transcriptional Analyses [My Copy] Annual Review of Plant Biology, Vol. 60, No. 1. (9 January 2009), pp. 305-333. by Stacey A. Simon, Jixian Zhai, Raja S. Nandety, et al.Kevin P. McCormick, Jia Zeng, Diego Mejia, Blake C. Meyers posted to sequencing review next-generation-sequencing by darian on 2009-11-11 10:36:40 as along with 6 people giovenko heliopais manduca GeeSharpMinor orzenil abizar
	SNP-o-matic [My Copy] Bioinformatics, Vol. 25, No. 18. (15 September 2009), pp. 2434-2435. by Heinrich M. Manske, Dominic P. Kwiatkowski posted to snps readmapper applications by darian on 2009-11-11 10:33:53 as along with 10 people and 1 group GeeSharpMinor daforerog ThomasDOtto natstreet misonneh druvus guhjy Zephyrus orzenil n00c Journal picks
	VarScan: variant detection in massively parallel sequencing of individual and pooled samples [My Copy] Bioinformatics, Vol. 25, No. 17. (1 September 2009), pp. 2283-2285. by Daniel C. Koboldt, Ken Chen, Todd Wylie, et al.David E. Larson, Michael D. McLellan, Elaine R. Mardis, George M. Weinstock, Richard K. Wilson, Li Ding posted to snps sequencing applications by darian on 2009-11-11 10:32:38 as along with 13 people and 3 groups seb1 heliopais mkiyer dakelley djkt PabloMarin guhjy n00c orzenil natstreet druvus stajich malcook Journal picks Mycology SIMR bioinformatics
	Mapping Accuracy of Short Reads from Massively Parallel Sequencing and the Implications for Quantitative Expression Profiling [My Copy] PLoS ONE, Vol. 4, No. 7. (28 July 2009), e6323. by Nicola Palmieri, Christian Schlötterer posted to readmapping benchmark by darian on 2009-11-11 10:27:20 as along with 14 people and 3 groups debasis mqbphcw3 stubrown Thaverkamp PabloMarin jasontsai ThomasDOtto heliopais guhjy cisevol n00c natstreet druvus jbhiatt Journal picks JLab BergmanLab
	ShortRead: a bioconductor package for input, quality assessment and exploration of high-throughput sequence data. [My Copy] Bioinformatics (Oxford, England), Vol. 25, No. 19. (1 October 2009), pp. 2607-2608. by Martin Morgan, Simon Anders, Michael Lawrence, Patrick Aboyoun, Hervé Pagès, Robert Gentleman posted to sequence_data applications by darian on 2009-11-11 10:24:11 as along with 13 people and 1 group jforment fstrozzi rschulz djkt jmeppley dswan torfinnnome walshtp jamesmorris joaocarrico natstreet n00c druvus Bioinformatics Core Service
	LookSeq: A browser-based viewer for deep sequencing data [My Copy] Genome Research, Vol. 19, No. 11. (29 November 2009), pp. 2125-2132. by Heinrich M. Manske, Dominic P. Kwiatkowski posted to applications by darian on 2009-11-11 10:21:50 as along with 26 people and 2 groups dakelley tonamswish inesdesantiago Thaverkamp idonaldson heliopais owhitney GustavoLacerda ngehlenborg sandfire fpattyn xianjun katholt stubrown orzenil operon guhjy kongl stajich n00c torfinnnome nuin kshameer neils druvus natstreet BergmanLab Mycology
	PerM: efficient mapping of short sequencing reads with periodic full sensitive spaced seeds [My Copy] Bioinformatics, Vol. 25, No. 19. (1 October 2009), pp. 2514-2521. by Yangho Chen, Tade Souaiaia, Ting Chen posted to readmapper by darian on 2009-11-11 10:21:01 as along with 8 people and 1 group dswan operon fishtank polivares n00c torfinnnome druvus natstreet BergmanLab
	Updates to the RMAP short-read mapping software [My Copy] Bioinformatics, Vol. 25, No. 21. (1 November 2009), pp. 2841-2842. by Andrew D. Smith, Wen-Yu Chung, Emily Hodges, et al.Jude Kendall, Greg Hannon, James Hicks, Zhenyu Xuan, Michael Q. Zhang posted to readmapper by darian on 2009-11-11 10:19:35 as along with 7 people and 1 group natstreet djkt rtogawa idonaldson heliopais n00c druvus Journal picks
	Fast mapping of short sequences with mismatches, insertions and deletions using index structures. [My Copy] PLoS computational biology, Vol. 5, No. 9. (11 September 2009), e1000502. by Steve Hoffmann, Christian Otto, Stefan Kurtz, et al.Cynthia M. Sharma, Philipp Khaitovich, Jörg Vogel, Peter F. Stadler, Jörg Hackermüller posted to readmapper by darian on 2009-11-11 10:15:15 as along with 17 people and 4 groups nuin fenghezi behindtherabbit jandot walshtp torfinnnome stubrown dswan polivares orzenil natstreet djkt jmcq n00c heliopais ppgardne druvus Bioinformatics BergmanLab iSEEM Journal picks
	Slider - Maximum use of probability information for alignment of short sequence reads and SNP detection [My Copy] Bioinformatics, Vol. 25, No. 1. (30 October 2008), pp. btn565-13. by Nawar Malhis, Yaron Butterfield, Martin Ester, Steven J. M. Jones posted to readmapper by darian on 2009-11-11 08:58:40 as along with 8 people seb1 torfinnnome orzenil jsatkosk n00c mdimon druvus jmeppley
	The GNUMAP Algorithm: Unbiased Probabilistic Mapping of Oligonucleotides from Next-Generation Sequencing [My Copy] Bioinformatics (27 October 2009), btp614. by Nathan L. Clement, Quinn Snell, Mark J. Clement, et al.Peter C. Hollenhorst, Jahnvi Purwar, Barbara J. Graves, Bradley R. Cairns, W. Evan Johnson posted to readmapper by darian on 2009-11-11 08:54:46 as along with 4 people operon heliopais n00c druvus
	Nineteen Additional Unpredicted Transcripts from Human Chromosome 21 [My Copy] Genomics, Vol. 79, No. 6. (June 2002), pp. 824-832. by Alexandre Reymond, Anamaria A. Camargo, Samuel Deutsch, et al.Brian J. Stevenson, Raphael B. Parmigiani, Catherine Ucla, Fabiana Bettoni, Colette Rossier, Robert Lyle, Michel Guipponi posted to linkage-analysis by darian on 2009-11-10 11:33:17 as
	Genome screening by searching for shared segments: mapping a gene for benign recurrent intrahepatic cholestasis [My Copy] Nature Genetics, Vol. 8, No. 4. (01 December 1994), pp. 380-386. by Roderick H. J. Houwen, Siamak Baharloo, Kathleen Blankenship, et al.Peter Raeymaekers, Jenneke Juyn, Lodewijk A. Sandkuijl, Nelson B. Freimer posted to linkage-analysis by darian on 2009-11-10 10:03:40 as
	A metric map of humans: 23,500 loci in 850âbands [My Copy] Proceedings of the National Academy of Sciences of the United States of America, Vol. 93, No. 25. (10 December 1996), pp. 14771-14775. by A. Collins, J. Frezal, J. Teague, Morton posted to linkage-analysis by darian on 2009-11-06 14:53:39 as
	A four-stage algorithm for updating a Burrows-Wheeler transform [My Copy] Theor. Comput. Sci., Vol. 410, No. 43. (15 July 2009), pp. 4350-4359. by M. Salson, T. Lecroq, M. Léonard, L. Mouchard posted to burrows-wheeler by darian on 2009-10-22 15:53:36 as
	Dynamic extended suffix arrays [My Copy] Journal of Discrete Algorithms (31 March 2009) by M. Salson, T. Lecroq, M. Léonard, L. Mouchard posted to suffix-array by darian on 2009-10-22 15:52:57 as
	Handbook of Genome Research [My Copy] edited by Christoph W. Sensen posted to genetics by darian on 2009-10-06 09:50:42 as
	JBrowse: A next-generation genome browser [My Copy] Genome Research, Vol. 19, No. 9. (1 September 2009), pp. 1630-1638. by Mitchell E. Skinner, Andrew V. Uzilov, Lincoln D. Stein, Christopher J. Mungall, Ian H. Holmes posted to genome-browser by darian on 2009-10-05 16:51:49 as along with 27 people and 2 groups mkiyer daforerog n00c torfinnnome fenghezi djkt WXuan Zephyrus idonaldson pkonings inesdesantiago jcbarret jamselem aprasad urgi polivares cassj guhjy giovanni druvus natstreet fpattyn cisevol danmaclean timhubbard operon neils BergmanLab Journal picks
	ALOHOMORA: a tool for linkage analysis using 10K SNP array data [My Copy] Bioinformatics, Vol. 21, No. 9. (1 May 2005), pp. 2123-2125. by Franz Ruschendorf, Peter Nurnberg posted to linkage-analysis by darian on 2009-10-05 16:51:33 as along with 1 person psique
	Managing and analyzing next-generation sequence data. [My Copy] PLoS computational biology, Vol. 5, No. 6. (26 June 2009), e1000369. by Brent G. Richter, David P. Sexton posted to next-generation-sequencing by darian on 2009-10-05 15:21:21 as along with 38 people and 3 groups chvlyl sameersoi hpaces gdv GeeSharpMinor idonaldson daveGerrard tharris Yanno inesdesantiago jcaddy agbiotec humburg Zephyrus daforerog stubrown GustavoLacerda torfinnnome natstreet polivares orzenil kongl guhjy druvus n00c leemond31 nuin operon jasontsai jmeppley rdiaz michaelbarton dswan reyez kshameer TRHvidsten djkt ppgardne BergmanLab Bioinformatics Journal picks
	Mapping short DNA sequencing reads and calling variants using mapping quality scores. [My Copy] Genome research, Vol. 18, No. 11. (19 November 2008), pp. 1851-1858. by Heng Li, Jue Ruan, Richard Durbin posted to readmapper by darian on 2009-10-05 15:07:07 as along with 35 people and 2 groups cthachuk darshan adijr bozdagd jmanning2k stubrown APRegier ghattem jbhiatt mmartin michaelbarton polivares jonilaserson humburg n00c jessopher maren GeeSharpMinor vmsr vplagnol natstreet poschm jfr druvus dandaman xingxu rschulz jmcq inesdesantiago Neeperando nmohelli matthewsuderman bpb gdb farhat SIMR bioinformatics BergmanLab
	HaploPainter: a tool for drawing pedigrees with complex haplotypes [My Copy] Bioinformatics, Vol. 21, No. 8. (15 April 2005), pp. 1730-1732. by Holger Thiele, Peter Nurnberg posted to linkage-analysis by darian on 2009-10-02 15:39:10 as
	Synthesizing arbitrary quantum states in a superconducting resonator [My Copy] Nature, Vol. 459, No. 7246. (28 May 2009), pp. 546-549. by Max Hofheinz, H. Wang, M. Ansmann, et al.Radoslaw C. Bialczak, Erik Lucero, M. Neeley, A. D. O'Connell, D. Sank, J. Wenner, John M. Martinis, A. N. Cleland posted to quantum-computer by darian on 2009-09-23 14:29:31 as along with 2 people jneer akhuettel
	Complete Methods Set for Scalable Ion Trap Quantum Information Processing [My Copy] Science, Vol. 325, No. 5945. (4 September 2009), pp. 1227-1230. by Jonathan P. Home, David Hanneke, John D. Jost, Jason M. Amini, Dietrich Leibfried, David J. Wineland posted to quantum-computer by darian on 2009-09-23 14:28:32 as along with 2 people and 1 group holx spreeuw Qugatopia
	Demonstration of two-qubit algorithms with a superconducting quantum processor [My Copy] Nature, Vol. 460, No. 7252. (28 June 2009), pp. 240-244. by L. DiCarlo, J. M. Chow, J. M. Gambetta, et al.Lev S. Bishop, B. R. Johnson, D. I. Schuster, J. Majer, A. Blais, L. Frunzio, S. M. Girvin, R. J. Schoelkopf posted to quantum-computer algorithm by darian on 2009-09-23 14:27:02 as along with 4 people denisamparo Kricki holx TRHvidsten
	A robust framework for detecting structural variations in a genome [My Copy] Bioinformatics, Vol. 24, No. 13. (1 July 2008), pp. i59-67. by Seunghak Lee, Elango Cheran, Michael Brudno posted to readmapping by darian on 2009-09-22 13:30:19 as along with 10 people matted dakelley jonilaserson rdiaz balicea Neeperando kittipat matthewsuderman raistrick APRegier
	Alignment Uncertainty and Genomic Analysis [My Copy] Science, Vol. 319, No. 5862. (25 January 2008), pp. 473-476. by Karen M. Wong, Marc A. Suchard, John P. Huelsenbeck posted to multiple-alignment by darian on 2009-09-22 09:35:03 as along with 32 people and 2 groups operon walshtp ptrobajo friendpine skembel druvus treangen bpb aprasad dayjm pradiptaray dpollard tny djkt cjeans zwang lisa1 cactus biomcgary lilou dandaman gjuggler renatomilani mclarenv youdon bpcusack guhjy jdelcampo adacier gracio timflutre jfr EisenLab microbiology_nijmegen
	Automated generation of heuristics for biological sequence comparison. [My Copy] BMC bioinformatics, Vol. 6, No. 1. (2005), 31. by Guy St S. Slater, Ewan Birney posted to readmapper by darian on 2009-09-20 15:08:21 as along with 11 people and 1 group rshe mhamada orzenil jmcq druvus waszak indigoviolet massivemayhem wenhan hpaces marti EisenLab
	Comprehensive Human Genetic Maps: Individual and Sex-Specific Variation in Recombination [My Copy] The American Journal of Human Genetics, Vol. 63, No. 3. (September 1998), pp. 861-869. by K. Broman, J. Murray, V. Sheffield, R. White, J. Weber posted to linkage-analysis by darian on 2009-09-16 12:40:35 as
	Intensely punctate meiotic recombination in the class II region of the major histocompatibility complex [My Copy] Nature Genetics, Vol. 29, No. 2. (01 October 2001), pp. 217-222. by Alec J. Jeffreys, Liisa Kauppi, Rita Neumann posted to linkage-analysis by darian on 2009-09-16 12:08:46 as along with 2 people renewang jermth
	The Structure of Haplotype Blocks in the Human Genome [My Copy] Science, Vol. 296, No. 5576. (21 June 2002), pp. 2225-2229. by Stacey B. Gabriel, Stephen F. Schaffner, Huy Nguyen, et al.Jamie M. Moore, Jessica Roy, Brendan Blumenstiel, John Higgins, Matthew DeFelice, Amy Lochner, Maura Faggart, Shau N. Liu-Cordero, Charles Rotimi, Adebowale Adeyemo, Richard Cooper, Ryk Ward, Eric S. Lander, Mark J. Daly, David Altshuler posted to linkage-analysis by darian on 2009-09-16 12:06:22 as along with 8 people and 1 group senseable-urb daforerog maren Zephyrus ilyashl misonneh buyske Ayest Roswell Cancer Crosstalk
	A high-resolution recombination map of the human genome [My Copy] Nature Genetics, Vol. 31, No. 3. (10 June 2002), pp. 241-247. by Augustine Kong, Daniel F. Gudbjartsson, Jesus Sainz, et al.Gudrun M. Jonsdottir, Sigurjon A. Gudjonsson, Bjorgvin Richardsson, Sigrun Sigurdardottir, John Barnard, Bjorn Hallbeck, Gisli Masson, Adam Shlien, Stefan T. Palsson, Michael L. Frigge, Thorgeir E. Thorgeirsson, Jeffrey R. Gulcher, Kari Stefansson posted to linkage-analysis by darian on 2009-09-16 11:35:03 as along with 2 people and 1 group raizada vplagnol Raizada-Lab
	Easy calculations of lod scores and genetic risks on small computers. [My Copy] American journal of human genetics, Vol. 36, No. 2. (March 1984), pp. 460-465. by G. M. Lathrop, J. M. Lalouel posted to linkage-analysis by darian on 2009-09-16 09:47:10 as
	Strategies for multilocus linkage analysis in humans [My Copy] Proceedings of the National Academy of Sciences of the United States of America, Vol. 81, No. 11. (June 1984), pp. 3443-3446. by G. M. Lathrop, J. M. Lalouel, C. Julier, J. Ott posted to linkage-analysis by darian on 2009-09-16 09:44:31 as
	Homozygosity mapping: a way to map human recessive traits with the DNA of inbred children. [My Copy] Science (New York, N.Y.), Vol. 236, No. 4808. (19 June 1987), pp. 1567-1570. by E. S. Lander, D. Botstein posted to homozygosity-mapping by darian on 2009-09-15 12:27:49 as along with 3 people ktopaloglu daforerog lgatto
	Applications of computational tools to predict functional SNPs effects in human ErbB genes [My Copy] Journal of Receptors and Signal Transduction by Mouna Choura, Ahmed Rebaï‌ posted to protein-domain-prediction by darian on 2009-09-15 10:04:45 as
	Empirical methods for controlling false positives and estimating confidence in ChIP-Seq peaks [My Copy] BMC Bioinformatics, Vol. 9, No. 1. (2008), 523. by David Nix, Samir Courdy, Kenneth Boucher posted to chip-seq by darian on 2009-09-11 18:28:48 as along with 9 people and 2 groups gdb slv23 inesdesantiago ewilban1 floatingpoint WanderingAengus magusina ghattem caseybrown Bioinformatics - CRUK SIMR bioinformatics
	F-Seq: a feature density estimator for high-throughput sequence tags [My Copy] Bioinformatics, Vol. 24, No. 21. (1 November 2008), pp. 2537-2538. by Alan P. Boyle, Justin Guinney, Gregory E. Crawford, Terrence S. Furey posted to chip-seq by darian on 2009-09-11 17:10:33 as along with 17 people and 2 groups n00c idonaldson michaelbarton inesdesantiago gdb ewilban1 tonamswish guhjy kmdaily cassj fhalbrit jfr rschulz polivares cthachuk zhouyu aprasad JLab BergmanLab
	ChromaSig: A Probabilistic Approach to Finding Common Chromatin Signatures in the Human Genome [My Copy] PLoS Comput Biol, Vol. 4, No. 10. (17 October 2008), e1000201. by Gary Hon, Bing Ren, Wei Wang posted to chip-seq by darian on 2009-09-11 16:07:00 as along with 6 people sebastien_vigneau ewilban1 guhjy magusina inesdesantiago djkt
	An HMM approach to genome-wide identification of differential histone modification sites from ChIP-seq data [My Copy] Bioinformatics, Vol. 24, No. 20. (15 October 2008), pp. 2344-2349. by Han Xu, Chia-Lin Wei, Feng Lin, Wing-Kin Sung posted to chip-seq by darian on 2009-09-11 16:01:31 as along with 8 people mkiyer tonamswish ewilban1 rschulz polivares caseybrown djkt epigenetics
	Multiplex sequencing of paired-end ditags (MS-PET): a strategy for the ultra-high-throughput analysis of transcriptomes and genomes [My Copy] Nucl. Acids Res., Vol. 34, No. 12. (13 July 2006), e84. by Patrick Ng, Jack J. S. Tan, Hong S. Ooi, et al.Yen L. Lee, Kuo P. Chiu, Melissa J. Fullwood, Kandhadayar G. Srinivasan, Clotilde Perbost, Lei Du, Wing-Kin Sung, Chia-Lin Wei, Yijun Ruan posted to next-generation-sequencing 454 by darian on 2009-09-08 17:09:19 as along with 4 people torfinnnome floatingpoint guhjy bozdagd
	Mapping chromosomal proteins in vivo by formaldehyde-crosslinked-chromatin immunoprecipitation [My Copy] Trends in Biochemical Sciences, Vol. 25, No. 3. (1 March 2000), pp. 99-104. by V. Orlando posted to formaldehyde-crosslinking by darian on 2009-09-08 16:14:02 as along with 1 person Petersarkies
	Analysis of chromatin structure by in vivo formaldehyde cross-linking. [My Copy] Methods (San Diego, Calif.), Vol. 11, No. 2. (February 1997), pp. 205-214. by V. Orlando, H. Strutt, R. Paro posted to formaldehyde-crosslinking by darian on 2009-09-08 16:06:21 as

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darian's library 306 articles Export

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