Simultaneous alignment of short reads against multiple genomes Export

@article{citeulike:5801584, abstract = {Genome resequencing with short reads generally relies on alignments against a single reference. GenomeMapper supports simultaneous mapping of short reads against multiple genomes by integrating related genomes (e.g., individuals of the same species) into a single graph structure. It constitutes the first approach for handling multiple references and introduces representations for alignments against complex structures. Demonstrated benefits include access to polymorphisms that cannot be identified by alignments against the reference alone. Download GenomeMapper at http://1001genomes.org.}, author = {Schneeberger, Korbinian and Hagmann, Jorg and Ossowski, Stephan and Warthmann, Norman and Gesing, Sandra and Kohlbacher, Oliver and Weigel, Detlef}, citeulike-article-id = {5801584}, citeulike-linkout-0 = {http://dx.doi.org/10.1186/gb-2009-10-9-r98}, citeulike-linkout-1 = {http://view.ncbi.nlm.nih.gov/pubmed/19761611}, citeulike-linkout-2 = {http://www.hubmed.org/display.cgi?uids=19761611}, day = {17}, doi = {10.1186/gb-2009-10-9-r98}, issn = {1465-6906}, journal = {Genome Biology}, keywords = {applications, readmapper}, month = {September}, number = {9}, pages = {R98+}, posted-at = {2009-11-11 10:40:57}, priority = {2}, title = {Simultaneous alignment of short reads against multiple genomes}, url = {http://dx.doi.org/10.1186/gb-2009-10-9-r98}, volume = {10}, year = {2009} }

TY - JOUR ID - citeulike:5801584 L3 - citeulike-article-id:5801584 N2 - Genome resequencing with short reads generally relies on alignments against a single reference. GenomeMapper supports simultaneous mapping of short reads against multiple genomes by integrating related genomes (e.g., individuals of the same species) into a single graph structure. It constitutes the first approach for handling multiple references and introduces representations for alignments against complex structures. Demonstrated benefits include access to polymorphisms that cannot be identified by alignments against the reference alone. Download GenomeMapper at http://1001genomes.org. IS - 9 JF - Genome Biology SN - 1465-6906 TI - Simultaneous alignment of short reads against multiple genomes VL - 10 SP - R98 KW - applications KW - readmapper AU - Schneeberger, Korbinian AU - Hagmann, Jorg AU - Ossowski, Stephan AU - Warthmann, Norman AU - Gesing, Sandra AU - Kohlbacher, Oliver AU - Weigel, Detlef PY - 2009/09/17/ UR - http://dx.doi.org/10.1186/gb-2009-10-9-r98 ER -