daveGerrard's library 294 articles Export

	Functional constraints and frequency of deleterious mutations in noncoding DNA of rodents. [My Copy] Proceedings of the National Academy of Sciences of the United States of America, Vol. 100, No. 23. (11 November 2003), pp. 13402-13406. by Peter D. Keightley, Daniel J. Gaffney posted to rodents mammals constraint by daveGerrard on 2009-11-20 16:04:55 as along with 1 person and 1 group cisevol cis-regulatory-evolution
	Recombination Rates May Affect the Ratio of X to Autosomal Non-coding Polymorphism in African Populations of Drosophila melanogaster [My Copy] Genetics (25 February 2009), genetics.108.098004. by Beatriz Vicoso, Brian Charlesworth posted to x_chromosome recombination_rates recombination drosophila diversity by daveGerrard on 2009-11-17 13:51:04 as along with 1 person djkt
	Coordinated Regulation of Heterochromatic Genes in Drosophila melanogaster Males [My Copy] Genetics, Vol. 182, No. 2. (1 June 2009), pp. 481-491. by Xinxian Deng, S. Kiran Koya, Ying Kong, Victoria H. Meller posted to sex_chromosomes regulatory_systems heterochromatin drosophila dosage_compensation co-expression chromatin by daveGerrard on 2009-11-17 13:46:33 as
	Distinctly different sex ratios in African and European populations of Drosophila melanogaster inferred from chromosomewide single nucleotide polymorphism data. [My Copy] Genetics, Vol. 177, No. 1. (September 2007), pp. 469-480. by Stephan Hutter, Haipeng Li, Steffen Beisswanger, David De Lorenzo, Wolfgang Stephan posted to x_vs_a x_chromosome population_genomics population_genetics melanogaster drosophila diversity by daveGerrard on 2009-11-17 12:15:21 as
	Ubiquitous selective constraints in the Drosophila genome revealed by a genome-wide interspecies comparison. [My Copy] Genome research, Vol. 16, No. 7. (2 July 2006), pp. 875-884. by Daniel L. Halligan, Peter D. Keightley posted to genomic_parameters drosophila constraint by daveGerrard on 2009-11-16 11:12:27 as along with 8 people and 3 groups tkmaia caseybrown RMGraze dpollard penka jri cisevol emptyhb EisenLab Nie cis-regulatory-evolution
	Direct estimation of per nucleotide and genomic deleterious mutation rates in Drosophila. [My Copy] Nature, Vol. 445, No. 7123. (4 January 2007), pp. 82-85. by Cathy Haag-Liautard, Mark Dorris, Xulio Maside, et al.Steven Macaskill, Daniel L. Halligan, David Houle, Brian Charlesworth, Peter D. Keightley posted to rate_of_mutation genomic_parameters drosophila constraint by daveGerrard on 2009-11-16 11:11:51 as along with 7 people and 1 group operon dpollard jri stajich ramensky lusk gjuggler EisenLab
	X chromosomes and autosomes evolve at similar rates in Drosophila: No evidence for faster-X protein evolution [My Copy] Genome Research, Vol. 16, No. 4. (6 April 2006), pp. 498-504. by Kevin Thornton, Doris Bachtrog, Peter Andolfatto posted to x_chromosome rate_of_evolution molecular_evolution drosophila by daveGerrard on 2009-11-13 14:32:47 as along with 3 people and 3 groups RMGraze indigoviolet penka BergmanLab EisenLab Nie
	Demasculinization of X chromosomes in the Drosophila genus [My Copy] Nature, Vol. 450, No. 7167. (08 November 2007), pp. 238-241. by David Sturgill, Yu Zhang, Michael Parisi, Brian Oliver posted to x_chromosome male-biased expression_evolution drosophila by daveGerrard on 2009-11-13 09:38:45 as
	Paucity of Genes on the Drosophila X Chromosome Showing Male-Biased Expression [My Copy] Science, Vol. 299, No. 5607. (31 January 2003), pp. 697-700. by Michael Parisi, Rachel Nuttall, Daniel Naiman, et al.Gerard Bouffard, James Malley, Justen Andrews, Scott Eastman, Brian Oliver posted to x_chromosome male-biased expression_evolution by daveGerrard on 2009-11-13 09:01:26 as along with 2 people and 1 group CharlesM penka Nie
	Conservation and Coevolution in the Scale-Free Human Gene Coexpression Network [My Copy] Mol Biol Evol, Vol. 21, No. 11. (1 November 2004), pp. 2058-2070. by I. King Jordan, Leonardo Marino-Ramirez, Yuri I. Wolf, Eugene V. Koonin posted to human expression_evolution by daveGerrard on 2009-11-09 16:34:58 as along with 4 people pengchy dragonrez bjorns Garamonfok
	Regulatory Divergence in Drosophila melanogaster and D. simulans, a Genomewide Analysis of Allele-Specific Expression [My Copy] Genetics, Vol. 183, No. 2. (1 October 2009), pp. 547-561. by Rita M. Graze, Lauren M. McIntyre, Bradley J. Main, Marta L. Wayne, Sergey V. Nuzhdin posted to expression_evolution drosophila cis_vs_trans allele by daveGerrard on 2009-11-09 14:28:36 as along with 1 person and 1 group djkt BergmanLab
	Evidence that localised variation in primate sequence divergence arises from an influence of nucleosome placement on DNA repair [My Copy] Mol Biol Evol (20 October 2009), msp253. by Hua Ying, Julian Epps, Rohan Williams, Gavin Huttley posted to primate nucleosome genome_architecture chromatin by daveGerrard on 2009-11-07 14:02:12 as
	Complex genetic interactions underlying expression differences between Drosophila races: analysis of chromosome substitutions. [My Copy] Proceedings of the National Academy of Sciences of the United States of America, Vol. 105, No. 17. (29 April 2008), pp. 6362-6367. by Hurng-Yi Y. Wang, Yonggui Fu, Mary Sara S. McPeek, et al.Xuemei Lu, Sergey Nuzhdin, Anlong Xu, Jian Lu, Mao-Lien L. Wu, Chung-I I. Wu posted to expression drosophila _evolution by daveGerrard on 2009-11-06 15:51:29 as along with 4 people roys maximilianh djkt brant
	Genomic inferences of the cis-regulatory nucleotide polymorphisms underlying gene expression differences between Drosophila melanogaster mating races. [My Copy] Molecular biology and evolution, Vol. 23, No. 8. (5 August 2006), pp. 1585-1591. by Naoki Osada, Michael H. Kohn, Chung-I I. Wu posted to population_genetics expression_evolution drosophila cis_vs_trans by daveGerrard on 2009-11-06 15:47:52 as along with 5 people and 1 group dpollard emilyhare adepace natstreet emptyhb EisenLab
	Gene expression polymorphism in Drosophila populations. [My Copy] Molecular ecology, Vol. 16, No. 6. (March 2007), pp. 1179-1189. by Pawel Michalak, John H. Malone, Ivan Timothy T. Lee, Daiju Hoshino, Daina Ma posted to population_genetics expression_variation expression drosophila _evolution by daveGerrard on 2009-11-06 15:46:13 as
	Cis and trans regulatory effects contribute to natural variation in transcriptome of Drosophila melanogaster. [My Copy] Molecular biology and evolution, Vol. 25, No. 1. (12 January 2008), pp. 101-110. by Anne Genissel, Lauren M. McIntyre, Marta L. Wayne, Sergey V. Nuzhdin posted to expression_variation expression_evolution drosophila cis_vs_trans by daveGerrard on 2009-11-06 15:44:55 as along with 5 people athma lusk djkt mimulus_99 caseybrown
	Coordinated evolution of co-expressed gene clusters in the Drosophila transcriptome. [My Copy] BMC evolutionary biology, Vol. 8 (07 January 2008), 2. by Jason G. Mezey, Sergey V. Nuzhdin, Fangfei Ye, Corbin D. Jones posted to gene_clusters expresion_evolution drosophila co-expression by daveGerrard on 2009-11-06 15:43:26 as along with 2 people and 1 group emptyhb cisevol cis-regulatory-evolution
	Gene expression variation in African and European populations of Drosophila melanogaster [My Copy] Genome Biology, Vol. 9, No. 1. (21 January 2008), R12. by Stephan Hutter, Sarah S. Peter, Wolfgang Stephan, John Parsch posted to x_chromosome population_genetics expression_variation expression_evolution drosophila by daveGerrard on 2009-11-06 15:42:05 as along with 3 people and 1 group caseybrown sb_journal_club cisevol cis-regulatory-evolution
	Polytene Chromosomal Maps of 11 Drosophila Species: The Order of Genomic Scaffolds Inferred From Genetic and Physical Maps [My Copy] Genetics, Vol. 179, No. 3. (1 July 2008), pp. 1601-1655. by Stephen W. Schaeffer, Arjun Bhutkar, Bryant F. McAllister, et al.Muneo Matsuda, Luciano M. Matzkin, Patrick M. O'Grady, Claudia Rohde, Vera L. S. Valente, Montserrat Aguade, Wyatt W. Anderson, Kevin Edwards, Ana C. L. Garcia, Josh Goodman, James Hartigan, Eiko Kataoka, Richard T. Lapoint, Elena R. Lozovsky, Carlos A. Machado, Mohamed A. F. Noor, Montserrat Papaceit, Laura K. Reed, Stephen Richards, Tania T. Rieger, Susan M. Russo, Hajime Sato, Carmen Segarra, Douglas R. Smith, Temple F. Smith, Victor Strelets, Yoshiko N. Tobari, Yoshihiko Tomimura, Marvin Wasserman, Thomas Watts, Robert Wilson, Kiyohito Yoshida, Therese A. Markow, William M. Gelbart, Thomas C. Kaufman posted to drosophila chromosome_maps by daveGerrard on 2009-11-06 14:47:16 as along with 1 person and 1 group isimpson Notre Dame Bioinformatics
	Rearrangement Phylogeny of Genomes in Contig Form [My Copy] Bioinformatics Research and Applications (2009), pp. 160-172. by Adriana Muñoz, David Sankoff posted to genomics chromosomal_rearrangement by daveGerrard on 2009-11-06 13:56:45 as
	Inferring genome-scale rearrangement phylogeny and ancestral gene order: a Drosophila case study [My Copy] Genome Biology, Vol. 8, No. 11. (08 November 2007), R236. by Arjun Bhutkar, William Gelbart, Temple Smith posted to genomics drosophila chromosomal_rearrangement by daveGerrard on 2009-11-06 13:48:44 as along with 7 people and 1 group operon indigoviolet dpollard balicea maximilianh hpaces isimpson EisenLab
	Chromosomal Rearrangement Inferred From Comparisons of 12 Drosophila Genomes [My Copy] Genetics, Vol. 179, No. 3. (1 July 2008), pp. 1657-1680. by Arjun Bhutkar, Stephen W. Schaeffer, Susan M. Russo, Mu Xu, Temple F. Smith, William M. Gelbart posted to genomics drosophila chromosomal_rearrangement by daveGerrard on 2009-11-06 13:47:12 as along with 2 people caseybrown isimpson
	A gene atlas of the mouse and human protein-encoding transcriptomes. [My Copy] Proceedings of the National Academy of Sciences of the United States of America, Vol. 101, No. 16. (20 April 2004), pp. 6062-6067. by Andrew I. Su, Tim Wiltshire, Serge Batalov, et al.Hilmar Lapp, Keith A. Ching, David Block, Jie Zhang, Richard Soden, Mimi Hayakawa, Gabriel Kreiman, Michael P. Cooke, John R. Walker, John B. Hogenesch posted to tissue_specificity mammal locus_control_region gene_cluster expression_breadth atlas by daveGerrard on 2009-11-05 14:01:21 as along with 18 people and 2 groups sjcockell harel_shein suizifish lawraga frohike daforerog dragonrez nickluscombe jeremymiller eukfn usagi-kirin cjeans asu shikin jdiezperezj caseybrown maralena gjuggler EBI-regulation GeschwindLab
	Effects of Gene Expression on Molecular Evolution in Arabidopsis thaliana and Arabidopsis lyrata [My Copy] Mol Biol Evol, Vol. 21, No. 9. (1 September 2004), pp. 1719-1726. by Stephen I. Wright, C. B. Kenneth Yau, Mark Looseley, Blake C. Meyers posted to genomic_parameters expression_evolution arabidopsis by daveGerrard on 2009-11-05 13:19:39 as
	Fellatio by Fruit Bats Prolongs Copulation Time [My Copy] PLoS ONE, Vol. 4, No. 10. (28 October 2009), e7595. by Min Tan, Gareth Jones, Guangjian Zhu, et al.Jianping Ye, Tiyu Hong, Shanyi Zhou, Shuyi Zhang, Libiao Zhang posted to fellatio by daveGerrard on 2009-11-05 12:03:06 as along with 1 person Sehoya
	The transcriptional consequences of mutation and natural selection in Caenorhabditis elegans [My Copy] Nature Genetics, Vol. 37, No. 5. (24 April 2005), pp. 544-548. by Dee R. Denver, Krystalynne Morris, J. Todd Streelman, Stuart K. Kim, Michael Lynch, W. Kelley Thomas posted to stabilizing_selection mutation_accumulation expression_evolution caenorhabditis_elegans c_elegans by daveGerrard on 2009-11-05 11:47:41 as along with 5 people and 1 group thegoose2 tharris rklancer mimulus_99 emptyhb C. elegans / WormBase
	Simpler mode of inheritance of transcriptional variation in male Drosophila melanogaster [My Copy] Proceedings of the National Academy of Sciences, Vol. 104, No. 47. (20 November 2007), pp. 18577-18582. by Marta L. Wayne, Marina Telonis-Scott, Lisa M. Bono, et al.Larry Harshman, Artyom Kopp, Sergey V. Nuzhdin, Lauren M. McIntyre posted to variability transcription sex_chromosomes drosophila by daveGerrard on 2009-11-05 11:44:50 as along with 3 people operon jbsaltz mimulus_99
	Impact of Transcriptional Properties on Essentiality and Evolutionary Rate [My Copy] Genetics, Vol. 175, No. 1. (1 January 2007), pp. 199-206. by Jung K. Choi, Sang C. Kim, Jungmin Seo, Sangsoo Kim, Jong Bhak posted to variability expression_evolution constraint by daveGerrard on 2009-11-05 11:42:05 as along with 2 people and 1 group operon bjorns BergmanLab
	Rapid evolution of male-biased gene expression in Drosophila [My Copy] Proceedings of the National Academy of Sciences of the United States of America, Vol. 100, No. 17. (19 August 2003), pp. 9894-9899. by Colin D. Meiklejohn, John Parsch, JosÃ© M. Ranz, Daniel L. Hartl posted to sexual_dimporphism sex-bias male-biased expression_evolution by daveGerrard on 2009-11-05 11:38:28 as along with 4 people and 1 group CharlesM RMGraze penka filmsternchen Nie
	Systems genetics of complex traits in Drosophila melanogaster [My Copy] Nature Genetics, Vol. 41, No. 3. (22 February 2009), pp. 299-307. by Julien F. Ayroles, Mary A. Carbone, Eric A. Stone, et al.Katherine W. Jordan, Richard F. Lyman, Michael M. Magwire, Stephanie M. Rollmann, Laura H. Duncan, Faye Lawrence, Robert R. H. Anholt, Trudy F. C. Mackay posted to systems_biology sexual_dimporphism sex-bias phenotype male-biased expression_level expression_evolution drosophila complex_traits by daveGerrard on 2009-11-05 11:10:10 as along with 15 people and 2 groups ongenetics timflutre FuncGen thokall bernadettgaal dpollard semrich roys rdiaz fenghezi emptyhb bertrandservin daforerog provero djkt BergmanLab RockmanLab
	The Chemical Genomic Portrait of Yeast: Uncovering a Phenotype for All Genes [My Copy] Science, Vol. 320, No. 5874. (18 April 2008), pp. 362-365. by Maureen E. Hillenmeyer, Eula Fung, Jan Wildenhain, et al.Sarah E. Pierce, Shawn Hoon, William Lee, Michael Proctor, St, Mike Tyers, Daphne Koller, Russ B. Altman, Ronald W. Davis, Corey Nislow, Guri Giaever posted to yeast phenotype essentiality by daveGerrard on 2009-11-05 11:08:20 as along with 17 people and 1 group bpcusack jdoconnell rdowell lawraga ajbattle sschurer ocs emptyhb tmmurali nfreed bala lp2 roys stajich chasmand guhjy raiyar Mycology
	Evolving gene expression: from G to E to G×E [My Copy] Trends in Ecology & Evolution, Vol. 24, No. 12. (21 December 2009), pp. 649-658. by Andrea Hodgins-Davis, Jeffrey P. Townsend posted to review expression_evolution by daveGerrard on 2009-11-05 09:21:52 as along with 1 person maren
	Finding evolutionarily conserved cis-regulatory modules with a universal set of motifs [My Copy] BMC Bioinformatics, Vol. 10, No. 1. (2009), 82. by Bartek Wilczynski, Norbert Dojer, Mateusz Patelak, Jerzy Tiuryn posted to transcription_factor_binding_site in_silico computational_predicition cis-regulatory_element by daveGerrard on 2009-11-04 15:19:47 as along with 9 people and 2 groups ilyashl svenrahmann idonaldson maximilianh bmajoros nuin idoerg cisevol dquest cis-regulatory-evolution BergmanLab
	Housekeeping genes tend to show reduced upstream sequence conservation [My Copy] Genome Biology, Vol. 8 (13 July 2007), R140. by Domenec Farre, Nicolas Bellora, Loris Mularoni, Xavier Messeguer, Mar posted to rate_of_evolution expression_breadth constraint by daveGerrard on 2009-11-04 15:16:25 as along with 6 people and 3 groups inesdesantiago treangen djkt Garamonfok cisevol gjuggler Bioinformatics cis-regulatory-evolution BergmanLab
	Local DNA topography correlates with functional noncoding regions of the human genome. [My Copy] Science (New York, N.Y.), Vol. 324, No. 5925. (17 April 2009), pp. 389-392. by Stephen C. Parker, Loren Hansen, Hatice Ozel O. Abaan, Thomas D. Tullius, Elliott H. Margulies posted to topography noncoding_regions constraint comparative_genomics by daveGerrard on 2009-11-04 15:15:09 as along with 38 people and 6 groups operon sujaikumar antonkratz pradiptaray roys gjuggler benjaminsb gdb hagechouchin443 tomtullius scjparker psique orzenil emptyhb ilyashl coela VGreiff APRegier myzhang pkonings akundaje athma absterga rpatward timflutre stajich bpcusack jbhiatt djkt dhlbh friendpine dpollard inesdesantiago JustinCrocker aprasad maximilianh idonaldson kshundyak BergmanLab Mycology structural_bioinformatics RockmanLab EisenLab cis-regulatory-evolution
	Incongruent expression profiles between human and mouse orthologous genes suggest widespread neutral evolution of transcription control. [My Copy] Omics : a journal of integrative biology, Vol. 8, No. 1. (2004), pp. 15-24. by Itai Yanai, Dan Graur, Ron Ophir posted to neutral expression_evolution by daveGerrard on 2009-11-04 11:54:35 as along with 3 people jeremymiller cjeans gjuggler
	A neutral model of transcriptome evolution. [My Copy] PLoS biology, Vol. 2, No. 5. (May 2004) by Philipp Khaitovich, Gunter Weiss, Michael Lachmann, et al.Ines Hellmann, Wolfgang Enard, Bjoern Muetzel, Ute Wirkner, Wilhelm Ansorge, Svante Pääbo posted to neutral hfsp_synopsis expression_evolution by daveGerrard on 2009-11-04 11:51:50 as along with 1 person ptrobajo
	Combination contraceptives: effects on weight. [My Copy] Cochrane database of systematic reviews (Online), No. 4. (2008) by Maria F. Gallo, Laureen M. Lopez, David A. Grimes, Kenneth F. Schulz, Frans M. Helmerhorst posted to sex_peptide controlled_trials by daveGerrard on 2009-11-03 15:26:23 as
	Evolutionary Conservation of Expression Profiles Between Human and Mouse Orthologous Genes [My Copy] Mol Biol Evol, Vol. 23, No. 3. (1 March 2006), pp. 530-540. by Ben-Yang Liao, Jianzhi Zhang posted to mammals expression_evolution constraint by daveGerrard on 2009-11-03 10:25:30 as along with 4 people and 1 group jeremymiller penka cjeans gjuggler Nie
	Identifying regulatory elements in eukaryotic genomes [My Copy] Brief Funct Genomic Proteomic, Vol. 8, No. 4. (1 July 2009), pp. 215-230. by Leelavati Narlikar, Ivan Ovcharenko posted to review cis-regulatory_element by daveGerrard on 2009-11-03 09:36:11 as along with 3 people and 1 group ppgardne natstreet idonaldson Journal picks
	CpG-depleted promoters harbor tissue-specific transcription factor binding signals--implications for motif overrepresentation analyses [My Copy] Nucl. Acids Res., Vol. 37, No. 19. (1 October 2009), pp. 6305-6315. by Helge G. Roider, Boris Lenhard, Aditi Kanhere, Stefan A. Haas, Martin Vingron posted to tissue_specificity promoter mammals cpg by daveGerrard on 2009-11-03 09:32:53 as along with 3 people and 1 group bmajoros idonaldson maximilianh BergmanLab
	Identification of core promoter modules in Drosophila and their application in accurate transcription start site prediction [My Copy] Nucl. Acids Res., Vol. 34, No. 20. (6 November 2006), pp. 5943-5950. by Uwe Ohler posted to promoter drosophila by daveGerrard on 2009-11-03 09:31:14 as
	Synthetic control of a fitness tradeoff in yeast nitrogen metabolism [My Copy] Journal of Biological Engineering, Vol. 3, No. 1. (2 January 2009), 1. by Travis Bayer, Kevin Hoff, Chase Beisel, Jack Lee, Christina Smolke posted to micro-evo-jc by daveGerrard on 2009-11-02 10:16:31 as along with 1 person Pascalichouchou
	Duplicate genes increase gene expression diversity within and between species. [My Copy] Nature genetics, Vol. 36, No. 6. (June 2004), pp. 577-579. by Zhenglong Gu, Scott A. Rifkin, Kevin P. White, Wen-Hsiung H. Li posted to microarray gene_duplication expression_evolution drosophila by daveGerrard on 2009-10-30 14:30:39 as along with 1 person and 1 group penka Nie
	High-resolution analysis of epigenetic changes associated with X inactivation. [My Copy] Genome research, Vol. 19, No. 8. (6 August 2009), pp. 1361-1373. by Hendrik Marks, Jennifer C. Chow, Sergei Denissov, et al.Kees-Jan J. Françoijs, Neil Brockdorff, Edith Heard, Hendrik G. Stunnenberg posted to x_inactivation sex_chromosomes imprinting by daveGerrard on 2009-10-30 12:11:31 as along with 3 people and 1 group sebastien_vigneau rschulz fenghezi X-chromosome inactivation
	Profiling the Human Protein-DNA Interactome Reveals ERK2 as a Transcriptional Repressor of Interferon Signaling [My Copy] Vol. 139, No. 3. (30 October 2009), pp. 610-622. by Shaohui Hu, Zhi Xie, Akishi Onishi, et al.Xueping Yu, Lizhi Jiang, Jimmy Lin, Hee-sool Rho, Crystal Woodard, Hong Wang, Jun-Seop Jeong, Shunyou Long, Xiaofei He, Herschel Wade, Seth Blackshaw, Jiang Qian, Heng Zhu posted to transcriptional_repressor transcription_factors interactions genomics gene_regulation cis-regulatory_element by daveGerrard on 2009-10-30 11:28:30 as along with 2 people and 1 group snow_dragon pedrobeltrao BergmanLab
	The functional consequences of alternative promoter use in mammalian genomes [My Copy] Trends in Genetics, Vol. 24, No. 4. (April 2008), pp. 167-177. by R. Davuluri, Y. Suzuki, S. Sugano, C. Plass, T. Huang posted to tissue_specific tata promoter gene_regulation alternative_splicing by daveGerrard on 2009-10-29 15:35:42 as along with 3 people and 1 group guhjy heliopais antonkratz BergmanLab
	The Soup in My Fly: Evolution, Form and Function of Seminal Fluid Proteins [My Copy] PLoS Biol, Vol. 6, No. 7. (29 July 2008), e179. by Tracey Chapman posted to sexual_conflict sex_peptide drosophila by daveGerrard on 2009-10-29 13:39:50 as along with 1 person stevanspringer
	A genetic signature of interspecies variations in gene expression. [My Copy] Nature genetics, Vol. 38, No. 7. (18 July 2006), pp. 830-834. by Itay Tirosh, Adina Weinberger, Miri Carmi, Naama Barkai posted to tata hfsp_synopsis expression_evolution by daveGerrard on 2009-10-28 17:40:24 as along with 8 people and 4 groups roys cabbagezs cisevol adepace nickluscombe aswin cjeans caseybrown BergmanLab cis-regulatory-evolution EisenLab EBI-regulation
	Evolution of gene sequence and gene expression are not correlated in yeast. [My Copy] Trends in genetics : TIG, Vol. 24, No. 3. (March 2008), pp. 109-113. by Itay Tirosh, Naama Barkai posted to yeast rate_of_evolution expression_evolution essentiality by daveGerrard on 2009-10-28 11:16:15 as along with 3 people djkt gjuggler huali

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drosophila	93
expression_evolution	51
cis-regulatory_element	32
in_silico	23
hfsp_synopsis	22
rate_of_evolution	19
genomics	16
nuclear_architecture	16
intron_delay	15
bioinformatics	13
chromosome_territory	13
comparative_genomics	13
constraint	13
element	12
genome_architecture	12
co-expression	11
ecdysone_receptor	11
curated	10
expression	9
evo_devo	8
human	8
mammal	8
mammals	8
network	8
complex_traits	7
expression_level	7
genomic	7
microarray	7
promoter	7
review	7
ecr	6
gene_length	6
molecular_evolution	6
neutral_theory	6
sex_chromosomes	6
x_chromosome	6
apoptosis	5
cell-cycle	5
chromatin	5
cis_vs_trans	5
database	5
development	5
evolution	5
genome	5
population_genetics	5
regulatory_sequence	5
transcription_factory	5
acp	4
complex_disease	4
computational_predicition	4
gene_cluster	4
gene_duplication	4
gene_regulation	4
genetic_variance	4
genomic_parameters	4
interactions	4
male-biased	4
selection	4
sequence_analysis	4
sociology_of_science	4
zygotic_transcription	4
alternative_splicing	3
arabidopsis	3
chip_chip	3
chromosomal_rearrangement	3
core_promoter	3
cre	3
crm	3
dorsal	3
dorsal_ventral	3
encode	3
epistasis	3
expression_breadth	3
expression_variation	3
gene_structure	3
genetic_drift	3
heterochromatin	3
imprinting	3
inversion	3
mating	3
modelling_embryogenesis	3
mutation	3
nested_genes	3
path_analysis	3
phenotype	3
primate	3
protein_evolution	3
r	3
rate_of_mutation	3
recombination	3
sequence_vs_regulatory_evolution	3
sex_peptide	3
sex_specific_expression	3
sexual_conflict	3
systems_biology	3
tissue_specific	3
tissue_specificity	3
transcription	3
transcription_factor_binding_site	3
transcript_length	3
twist	3
vertebrates	3
yeast	3
affymetrix	2
ageing	2
allele	2
analysis	2
binding_site	2
cancer	2
caudal	2
codon_bias	2
courtship	2
diversity	2
dn_ds	2
dominance	2
dtg	2
efficacy_of_selection	2
epigenetics	2
essentiality	2
evo_devo_rules	2
_evolution	2
fugu	2
gene	2
genome_alignment	2
hall_of_fame	2
high_resolution_probes	2
histone_modifications	2
human_adaptation	2
locus_control_region	2
melanogaster	2
motif_discovery	2
mutational_variance	2
neutral	2
nucleosome	2
phylotypic_stage	2
population_genomics	2
positive_selection	2
principal_components	2
reporter_gene_assay	2
sex-bias	2
sex_pheromone	2
sexual_dimporphism	2
snail	2
software	2
speciation	2
species_barrier	2
statistics	2
tagteam	2
tata	2
text_mining	2
tfbs	2
transcription_factor	2
variability	2
12_genomes	1
5-utr	1
adaptation	1
adaptive_evolution	1
americana	1
anova	1
anterior_posterior	1
a_p	1
ascertainment_bias	1
atlas	1
bacterial_pathogen	1
bayesian	1
bioconductor	1
brain	1
breakpoint	1
cad	1
caenorhabditis_elegans	1
career	1
catalase	1
cdf	1
ceacam	1
c_elegans	1
cellular_architecture	1
chado	1
chromosome_maps	1
cichlid	1
cnv	1
controlled_trials	1
convergence	1
cpg	1
curation	1
digital_life	1
direct_repeat	1
dmef2	1
domosaic	1
dosage_compensation	1
dref	1
d_v	1
eip74ef	1
emsa	1
e-qtl	1
evolution_theory	1
evolvability	1
exon	1
experimental_evolution	1
expresion_evolution	1
f1000_q	1
fdr	1
fellatio	1
fossil	1
gene_clusters	1
gene_conversion	1
genome_location	1
giant	1
go	1
hmm	1
homeostasis	1
hormone	1
information_theory	1
in_situ	1
insulin	1
jumanji	1
lifespan	1
luciferase	1
maternal	1
mef2	1
memory	1
metabolic_pathways	1
metamorphosis	1
metazoa	1
methods	1
methylation	1
micro-evo-jc	1
mobile_element	1
modencode	1
motif_ten_element	1
mte	1
muscle	1
mutation_accumulation	1
mutation_rate	1
natural_selection	1
natural_variation	1
neuronal_development	1
next_generation	1
ng1	1
noncoding_regions	1
non-coding_rna	1
open_dna	1
origin_of_replication	1
overlapping_genes	1
paml	1
partial_correlation	1
paternal	1
patterning	1
p-element	1
perciformes	1
polycomb	1
polymorphism	1
poor_papers	1
poplar	1
prediction	1
protein_domain	1
pseudoautosomal	1
recombination_rates	1
regulatory_systems	1
relocation	1
replication	1
rodents	1
r-project	1
sequence_data	1
sequencing	1
shadow_enhancers	1
sleep	1
smcy	1
snp	1
species_identity	1
specific	1
spp120	1
stabilizing_selection	1
stem_cell	1
teaching	1
technology	1
tissue	1
topography	1
transcriptional_repressor	1
transcription_factors	1
transposon	1
trithorax	1
tss	1
twice_posted	1
usp9y	1
uty	1
ventral	1
what_is_a_gene	1
x_inactivation	1
x_vs_a	1
y_chromosomes	1
zinc_finger	1

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