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dayjm's genomics [35 articles]

Recent papers added to dayjm's library classified by the tag genomics. You can also see everyone's genomics.
  • Finding the Needles in the Metagenome Haystack
    Microbial Ecology
    by George A Kowalchuk, Arjen GCL Speksnijder, Kun Zhang, Robert M Goodman, Johannes A van Veen
  • Viral Evolution in the Genomic Age
    PLoS Biology, Vol. 5, No. 10. (1 October 2007), e278.
    by Edward C Holmes
    posted to genomics general_virus evolution by dayjm on 2008-05-06 19:32:13 as *** along with 3 people dullhunk djkt zwang
  • Biodiversity and biogeography of phages in modern stromatolites and thrombolites
    Nature (02 March 2008)
    by Christelle Desnues, Beltran Rodriguez-Brito, Steve Rayhawk, Scott Kelley, Tuong Tran, Matthew Haynes, Hong Liu, Mike Furlan, Linda Wegley, Betty Chau, Yijun Ruan, Dana Hall, Florent E Angly, Robert A Edwards, Linlin Li, Rebecca V Thurber, Pamela R Reid, Janet Siefert, Valeria Souza, David L Valentine, Brandon K Swan, Mya Breitbart, Forest Rohwer
  • Alignment Uncertainty and Genomic Analysis
    Science, Vol. 319, No. 5862. (25 January 2008), pp. 473-476.
    by Karen M Wong, Marc A Suchard, John P Huelsenbeck
  • GENOMICS: Lining Up to Avoid Bias
    Science, Vol. 319, No. 5862. (25 January 2008), pp. 416-417.
    by Antonis Rokas
  • Genome sequencing in microfabricated high-density picolitre reactors
    Nature (31 July 2005)
    by Marcel Margulies, Michael Egholm, William E Altman, Said Attiya, Joel S Bader, Lisa A Bemben, Jan Berka, Michael S Braverman, Yi-Ju Chen, Zhoutao Chen, Scott B Dewell, Lei Du, Joseph M Fierro, Xavier V Gomes, Brian C Godwin, Wen He, Scott Helgesen, Chun H Ho, Gerard P Irzyk, Szilveszter C Jando, Maria LI Alenquer, Thomas P Jarvie, Kshama B Jirage, Jong-Bum Kim, James R Knight, Janna R Lanza, John H Leamon, Steven M Lefkowitz, Ming Lei, Jing Li, Kenton L Lohman, Hong Lu, Vinod B Makhijani, Keith E Mcdade, Michael P Mckenna, Eugene W Myers, Elizabeth Nickerson, John R Nobile, Ramona Plant, Bernard P Puc, Michael T Ronan, George T Roth, Gary J Sarkis, Jan F Simons, John W Simpson, Maithreyan Srinivasan, Karrie R Tartaro, Alexander Tomasz, Kari A Vogt, Greg A Volkmer, Shally H Wang, Yong Wang, Michael P Weiner, Pengguang Yu, Richard F Begley, Jonathan M Rothberg
  • ARACHNE: A Whole-Genome Shotgun Assembler
    Genome Res., Vol. 12, No. 1. (1 January 2002), pp. 177-189.
    by Serafim Batzoglou, David B Jaffe, Ken Stanley, Jonathan Butler, Sante Gnerre, Evan Mauceli, Bonnie Berger, Jill P Mesirov, Eric S Lander
  • Evolution of the mitochondrial genome: protist connections to animals, fungi and plants
    Current Opinion in Microbiology, Vol. 7, No. 5. (October 2004), pp. 528-534.
    by Charles E Bullerwell, Michael W Gray
    posted to evolution genomics reviews by dayjm on 2007-04-18 15:39:01 as ** along with 2 people stajich srfairclough
  • Opinion: Viral metagenomics
    Nature Reviews Microbiology, Vol. 3, No. 6. (01 June 2005), pp. 504-510.
    by Robert A Edwards, Forest Rohwer
  • 'Conserved hypothetical' proteins: prioritization of targets for experimental study.
    Nucleic Acids Res, Vol. 32, No. 18. (2004), pp. 5452-5463.
    by MY Galperin, EV Koonin
  • RNA Viral Community in Human Feces: Prevalence of Plant Pathogenic Viruses
    PLoS Biology, Vol. 4, No. 1. (1 January 2006), e3.
    by Tao Zhang, Mya Breitbart, Wah H Lee, Jin-Quan Run, Chia L Wei, Shirlena W Soh, Martin L Hibberd, Edison T Liu, Forest Rohwer, Yijun Ruan
    posted to gut genomics general_virus by dayjm on 2007-01-25 15:36:00 as **** along with 1 person wenhan
  • The ecology of the genome - mobile DNA elements and their hosts
    Nature Reviews Genetics, Vol. 6, No. 2. (01 February 2005), pp. 128-136.
    by John FY Brookfield
    posted to reviews mobile-dna genomics by dayjm on 2007-01-12 13:19:19 as ** along with 2 people timflutre candypmcg
  • Design of Microarray Experiments for Genetical Genomics Studies
    Genetics, Vol. 174, No. 2. (1 October 2006), pp. 945-957.
    by Julio S Filho, Steven G Gilmour, Guilherme J Rosa
  • RNA world - the dark matter of evolutionary genomics
    Journal of Evolutionary Biology, Vol. 19, No. 6. (2006), pp. 1768-1774.
  • Consensus folding of aligned sequences as a new measure for the detection of functional RNAs by comparative genomics.
    J Mol Biol, Vol. 342, No. 1. (3 September 2004), pp. 19-30.
    posted to general_rna genomics by dayjm on 2006-10-17 20:51:06 as ** along with 4 people arcticrasta Eonwe ilh elfar
  • Genetics: the bacterial world gets smaller
    Science, Vol. 314, No. 5797., pp. 259-260.
    by Siv GE Andersson
    posted to endosymbiont genomics news_commentary by dayjm on 2006-10-13 15:00:03 as read
  • Plagiarized bacterial genes in the human book of life
    Trends in Genetics, Vol. 17, No. 5. (1 May 2001), pp. 235-237.
    by Chris P Ponting
    posted to bacterial eukaryal evolution genomics by dayjm on 2006-10-12 20:29:24 as ***
  • Comparison of multiple vertebrate genomes reveals the birth and evolution of human exons
    PNAS, Vol. 103, No. 36. (5 September 2006), pp. 13427-13432.
    by Xiang H Zhang, Lawrence A Chasin
  • Genome analysis of the smallest free-living eukaryote Ostreococcus tauri unveils many unique features
    PNAS, Vol. 103, No. 31. (1 August 2006), pp. 11647-11652.
    by Evelyne Derelle, Conchita Ferraz, Stephane Rombauts, Pierre Rouze, Alexandra Z Worden, Steven Robbens, Frederic Partensky, Sven Degroeve, Sophie Echeynie, Richard Cooke, Yvan Saeys, Jan Wuyts, Kamel Jabbari, Chris Bowler, Olivier Panaud, Benoit Piegu, Steven G Ball, Jean-Philippe Ral, Francois-Yves Bouget, Gwenael Piganeau, Bernard De Baets, Andre Picard, Michel Delseny, Jacques Demaille, Yves Van de Peer, Herve Moreau
    posted to eukaryal evolution genomics by dayjm on 2006-08-03 14:43:55 as ** along with 2 people Fabnot fmaumus
  • Genetics: What is a gene?
    Nature, Vol. 441, No. 7092. (24 May 2006), pp. 398-401.
    by Helen Pearson
  • High diversity of unknown picorna-like viruses in the sea.
    Nature, Vol. 424, No. 6952. (28 August 2003), pp. 1054-1057.
    by AI Culley, AS Lang, CA Suttle
  • Metagenomic Analysis of Coastal RNA Virus Communities (Supporting Online Material)
    posted to general_virus genomics molecular_methods by dayjm on 2006-06-23 20:36:30 as ***
  • Metagenomic Analysis of Coastal RNA Virus Communities
    Science, Vol. 312, No. 5781. (23 June 2006), pp. 1795-1798.
    by Alexander I Culley, Andrew S Lang, Curtis A Suttle
  • Metagenomic Analyses of an Uncultured Viral Community from Human Feces
    J. Bacteriol., Vol. 185, No. 20. (15 October 2003), pp. 6220-6223.
    by Mya Breitbart, Ian Hewson, Ben Felts, Joseph M Mahaffy, James Nulton, Peter Salamon, Forest Rohwer
  • Metagenomic Analysis of the Human Distal Gut Microbiome
    Science, Vol. 312, No. 5778. (2 June 2006), pp. 1355-1359.
    by Steven R Gill, Mihai Pop, Robert T Deboy, Paul B Eckburg, Peter J Turnbaugh, Buck S Samuel, Jeffrey I Gordon, David A Relman, Claire M Fraser-Liggett, Karen E Nelson
  • Emergent Properties of Reduced-Genome Escherichia coli.
    Science (27 April 2006)
    by György Pósfai, Guy Plunkett Iii, Tamás Fehér, David Frisch, Günther M M Keil, Kinga Umenhoffer, Vitaliy Kolisnychenko, Buffy Stahl, Shamik S S Sharma, Monika de Arruda, Valerie Burland, Sarah W W Harcum, Frederick R R Blattner
  • Genomics and the Irreducible Nature of Eukaryote Cells
    Science, Vol. 312, No. 5776. (19 May 2006), pp. 1011-1014.
    by CG Kurland, LJ Collins, D Penny
  • Epigenetics: Unfinished symphony
    Nature, Vol. 441, No. 7090. (10 May 2006), pp. 143-145.
    by Jane Qiu
  • The Nature and Dynamics of Bacterial Genomes
    Science, Vol. 311, No. 5768. (24 March 2006), pp. 1730-1733.
    by Howard Ochman, Liliana M Davalos
  • T-Coffee: A novel method for fast and accurate multiple sequence alignment.
    J Mol Biol, Vol. 302, No. 1. (8 September 2000), pp. 205-217.
  • Characterization of a normalized cDNA library from bovine intestinal muscle and epithelial tissues.
    Anim Biotechnol, Vol. 16, No. 1. (2005), pp. 17-29.
    posted to genomics gut molecular_methods by dayjm on 2006-02-17 20:00:12 as **
  • Proteorhodopsin lateral gene transfer between marine planktonic Bacteria and Archaea
    Nature, Vol. 439, No. 7078. (16 February 2006), pp. 847-850.
    by Niels-Ulrik Frigaard, Asuncion Martinez, Tracy J Mincer, Edward F Delong
  • Comparative genomics, minimal gene-sets and the last universal common ancestor.
    Nat Rev Microbiol, Vol. 1, No. 2. (November 2003), pp. 127-136.
    by EV Koonin
  • Community Genomics Among Stratified Microbial Assemblages in the Ocean's Interior
    Science, Vol. 311, No. 5760. (27 January 2006), pp. 496-503.
    by Edward F Delong, Christina M Preston, Tracy Mincer, Virginia Rich, Steven J Hallam, Niels-Ulrik Frigaard, Asuncion Martinez, Matthew B Sullivan, Robert Edwards, Beltran R Brito, Sallie W Chisholm, David M Karl
  • Genomics: Discovery in the dirt
    Nature, Vol. 439, No. 7075. (25 January 2006), pp. 384-386.
    by Virginia Gewin
    posted to genomics microbiology news_commentary by dayjm on 2006-01-26 15:36:36 as read along with 1 person Yanno
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