dbensasson's genomics [35 articles] Export Sort

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	Ubiquitous internal gene duplication and intron creation in eukaryotes [My Copy] Proceedings of the National Academy of Sciences of the United States of America In Proceedings of the National Academy of Sciences, Vol. 106, No. 49. (19 November 2009), pp. 20818-20823. by Xiang Gao, Michael Lynch posted to mutation genomics evolution by dbensasson on 2009-12-02 15:24:33 as along with 3 people bpcusack maren jjray
	Modeling Linkage Disequilibrium and Identifying Recombination Hotspots Using Single-Nucleotide Polymorphism Data [My Copy] Genetics, Vol. 165, No. 4. (1 December 2003), pp. 2213-2233. by Na Li, Matthew Stephens posted to pop_gen genomics by dbensasson on 2009-11-16 10:54:23 as
	From elements to modules: regulatory evolution in Ascomycota fungi [My Copy] Current Opinion in Genetics & Development, Vol. 19, No. 6. (28 December 2009), pp. 571-578. by Dana Wohlbach,, Dawn n. n. e. Thompson,, Audrey Gasch,, Aviv Regev, posted to yeast genomics by dbensasson on 2009-11-07 15:05:53 as along with 1 person biomcgary
	Genome sequencing and comparative analysis of Saccharomyces cerevisiae strain YJM789 [My Copy] Proceedings of the National Academy of Sciences, Vol. 104, No. 31. (31 July 2007), pp. 12825-12830. by Wu Wei, John H. Mccusker, Richard W. Hyman, et al.Ted Jones, Ye Ning, Zhiwei Cao, Zhenglong Gu, Dan Bruno, Molly Miranda, Michelle Nguyen, Julie Wilhelmy, Caridad Komp, Raquel Tamse, Xiaojing Wang, Peilin Jia, Philippe Luedi, Peter J. Oefner, Lior David, Fred S. Dietrich, Yixue Li, Ronald W. Davis, Lars M. Steinmetz posted to cerevisiae genomics pop_gen by dbensasson on 2009-08-03 13:22:11 as along with 5 people and 2 groups waszak lesander raiyar lp2 dmc steinmetzlab Durbin group
	Genome-wide identification of replication origins in yeast by comparative genomics [My Copy] Genes & Development, Vol. 20, No. 14. (15 July 2006), pp. 1874-1879. by Conrad A. Nieduszynski, Yvonne Knox, Anne D. Donaldson posted to centromeres cerevisiae genomics mutation phylogenetics by dbensasson on 2009-08-03 11:18:47 as along with 1 person and 1 group indigoviolet EisenLab
	Heterochromatin revisited [My Copy] Nat Rev Genet, Vol. 8, No. 1. (January 2007), pp. 35-46. by Shiv I. S. Grewal, Songtao Jia posted to centromeres cerevisiae genomics by dbensasson on 2009-07-15 14:23:54 as along with 3 people suizifish Anders cabbagezs
	A global view of pleiotropy and phenotypically derived gene function in yeast [My Copy] Mol Syst Biol, Vol. 1, No. 1. (29 March 2005), pp. msb4100004-E1-msb4100004-E11. by Aimee M. Dudley, Daniel M. Janse, Amos Tanay, Ron Shamir, George M. Church posted to cerevisiae genomics phenotypes by dbensasson on 2009-06-10 14:07:46 as along with 9 people michaelbarton nicholasflann chihchun_chen balajis balicea i41m nirfriedman koller jiny
	Retroviruses and yeast retrotransposons use overlapping sets of host genes [My Copy] Genome Research, Vol. 15, No. 5. (May 2005), pp. 641-654. by Becky Irwin, Michael Aye, Pierre Baldi, et al.Nadejda Beliakova-Bethell, Henry Cheng, Yimeng Dou, Willy Liou, Suzanne Sandmeyer posted to cerevisiae genomics transposable_elements by dbensasson on 2009-06-10 13:36:57 as
	A Yeast Hybrid Provides Insight into the Evolution of Gene Expression Regulation [My Copy] Science, Vol. 324, No. 5927. (1 May 2009), pp. 659-662. by Itay Tirosh, Sharon Reikhav, Avraham A. Levy, Naama Barkai posted to cerevisiae genomics saccharomyces by dbensasson on 2009-06-01 13:43:15 as along with 8 people mjoach dipenps absterga djkt jbhiatt maximilianh emptyhb TRHvidsten
	Dissecting the pleiotropic consequences of a quantitative trait nucleotide. [My Copy] FEMS yeast research (23 April 2009) by Hyun Seok S. Kim, Juyoung Huh, Justin C C. Fay posted to qtl cerevisiae fungi genomics saccharomyces yeast by dbensasson on 2009-06-01 13:30:55 as
	The histone deacetylase Rpd3p is required for transient changes in genomic expression in response to stress [My Copy] Genome Biology, Vol. 10 (26 May 2009), R57. by Adriana Alejandro-Osorio, Dana Huebert, Dominic Porcaro, et al.Megan Sonntag, Songdet Nillasithanukroh, Jessica Will, Audrey Gasch posted to qtl cerevisiae genomics phenotypes saccharomyces yeast by dbensasson on 2009-06-01 13:24:00 as
	Enabling a community to dissect an organism: overview of the Neurospora functional genomics project. [My Copy] Adv Genet, Vol. 57 (2007), pp. 49-96. by J. C. Dunlap, K. A. Borkovich, M. R. Henn, et al.G. E. Turner, M. S. Sachs, N. L. Glass, K. McCluskey, M. Plamann, J. E. Galagan, B. W. Birren, R. L. Weiss, J. P. Townsend, J. J. Loros, M. A. Nelson, R. Lambreghts, H. V. Colot, G. Park, P. Collopy, C. Ringelberg, C. Crew, L. Litvinkova, D. DeCaprio, H. M. Hood, S. Curilla, M. Shi, M. Crawford, M. Koerhsen, P. Montgomery, L. Larson, M. Pearson, T. Kasuga, C. Tian, M. Baştürkmen, L. Altamirano, J. Xu posted to fungi genomics by dbensasson on 2009-04-07 13:45:16 as along with 2 people and 1 group JeremyZucker bootsy MetabolicModeling
	Repetitive sequence variation and dynamics in the ribosomal DNA array of Saccharomyces cerevisiae as revealed by whole genome resequencing. [My Copy] Genome research (13 January 2009) by Stephen A A. James, Michael Jt J. O'Kelly, David M M. Carter, Robert P P. Davey, Alexander van Oudenaarden, Ian N N. Roberts posted to biogeography cerevisiae genomics pop_gen population saccharomyces yeast by dbensasson on 2009-04-01 20:19:19 as along with 1 person orzenil
	The effect of domestication on the fungal proteome. [My Copy] Trends in genetics : TIG, Vol. 25, No. 2. (February 2009), pp. 60-63. by Antonis Rokas posted to domestication fungi genomics by dbensasson on 2009-04-01 14:58:25 as along with 5 people and 2 groups biomcgary GustavoLacerda bcondon djkt stajich Turgeon Lab Mycology
	The transcriptional landscape of the yeast genome defined by RNA sequencing. [My Copy] Science (New York, N.Y.) In Science, Vol. 320, No. 5881. (6 June 2008), pp. 1344-1349. by Ugrappa Nagalakshmi, Zhong Wang, Karl Waern, et al.Chong Shou, Debasish Raha, Mark Gerstein, Michael Snyder posted to cerevisiae genomics saccharomyces yeast by dbensasson on 2009-03-30 15:06:35 as along with 25 people and 1 group danbolser hzoltan bartjacobse GustavoLacerda debasis cfvillalta rdowell poschm jmcq waszak michaelbarton djkt urgi stajich semrich caseybrown gjuggler Retchless biomcgary GeeSharpMinor mapplab faion bpcusack guhjy shurjo Mycology
	Quantifying environmental adaptation of metabolic pathways in metagenomics [My Copy] Proceedings of the National Academy of Sciences, Vol. 106, No. 5. (3 February 2009), pp. 1374-1379. by Tara A. Gianoulis, Jeroen Raes, Prianka V. Patel, et al.Robert Bjornson, Jan O. Korbel, Ivica Letunic, Takuji Yamada, Alberto Paccanaro, Lars J. Jensen, Michael Snyder, Peer Bork, Mark B. Gerstein posted to qtl ecology genomics microbial_ecology phenotypes by dbensasson on 2009-03-30 14:16:38 as along with 16 people and 2 groups paccanarolab vvoorr djkt jjray roys sharpton Lizzy_fun skembel jlgreen Thaverkamp anphony michaelbarton idoerg trfield larsjuhljensen jmeppley Paccanaro Lab iSEEM
	Patterns of somatic mutation in human cancer genomes [My Copy] Nature, Vol. 446, No. 7132. (08 March 2007), pp. 153-158. by Christopher Greenman, Philip Stephens, Raffaella Smith, et al.Gillian L. Dalgliesh, Christopher Hunter, Graham Bignell, Helen Davies, Jon Teague, Adam Butler, Claire Stevens, Sarah Edkins, Sarah O/'Meara, Imre Vastrik, Esther E. Schmidt, Tim Avis, Syd Barthorpe, Gurpreet Bhamra, Gemma Buck, Bhudipa Choudhury, Jody Clements, Jennifer Cole, Ed Dicks, Simon Forbes, Kris Gray, Kelly Halliday, Rachel Harrison, Katy Hills, Jon Hinton, Andy Jenkinson, David Jones, Andy Menzies, Tatiana Mironenko, Janet Perry, Keiran Raine, Dave Richardson, Rebecca Shepherd, Alexandra Small, Calli Tofts, Jennifer Varian, Tony Webb, Sofie West, Sara Widaa, Andy Yates, Daniel P. Cahill, David N. Louis, Peter Goldstraw, Andrew G. Nicholson, Francis Brasseur, Leendert Looijenga, Barbara L. Weber, Yoke-Eng Chiew, Anna deFazio, Mel F. Greaves, Anthony R. Green, Peter Campbell, Ewan Birney, Douglas F. Easton, Georgia Chenevix-Trench, Min-Han Tan, Sok K. Khoo, Bin T. Teh, Siu T. Yuen, Suet Y. Leung, Richard Wooster, P. Andrew Futreal, Michael R. Stratton posted to genomics human mutation by dbensasson on 2009-03-25 15:05:49 as along with 15 people Neeperando xingxu ssgong koller kentsis jfr massivemayhem efge Garamonfok daed Petersarkies ramensky frohike cerami srp33
	Estimation of Allele Frequencies From High-Coverage Genome-Sequencing Projects [My Copy] Genetics, Vol. 182, No. 1. (1 May 2009), pp. 295-301. by Michael Lynch posted to genomics pop_gen population by dbensasson on 2009-03-25 10:09:45 as along with 7 people and 1 group n00c operon druvus avilella rs natstreet djkt Journal picks
	New Target Regions for Human Hypertension via Comparative Genomics [My Copy] Genome Research, Vol. 10, No. 4. (1 April 2000), pp. 473-482. by Monika Stoll, Anne E. Kwitek-Black, Allen W. Cowley, et al.Eugenie L. Harris, Stephen B. Harrap, José E. Krieger, Morton P. Printz, Abraham P. Provoost, Jean Sassard, Howard J. Jacob posted to qtl genomics human primate by dbensasson on 2009-03-24 16:40:25 as
	Assessing the Performance of Single-Copy Genes for Recovering Robust Phylogenies [My Copy] Systematic Biology, Vol. 57, No. 4. (August 2008), pp. 613-627. by Aguileta, G., Marthey, et al. S., Chiapello, H., Lebrun, -H, Rodolphe, F., Fournier, E., Gendrault-Jacquemard, A., Giraud, T. posted to evolution fungi genomics phylogenetics by dbensasson on 2009-03-24 15:18:13 as along with 2 people and 1 group nlapalu stajich Mycology
	Rate Asymmetry After Genome Duplication Causes Substantial Long-Branch Attraction Artifacts in the Phylogeny of Saccharomyces Species [My Copy] Molecular Biology and Evolution, Vol. 23, No. 2. (20 February 2006), pp. 245-253. by Mario A. Fares, Kevin P. Byrne, Kenneth H. Wolfe posted to evolution genomics yeast by dbensasson on 2009-03-09 14:16:38 as along with 1 person akifumi
	Genetic properties influencing the evolvability of gene expression. [My Copy] Science (New York, N.Y.), Vol. 317, No. 5834. (6 July 2007), pp. 118-121. by Christian R. Landry, Bernardo Lemos, Scott A. Rifkin, W. J. Dickinson, Daniel L. Hartl posted to cerevisiae evolution genomics saccharomyces yeast by dbensasson on 2009-03-09 14:04:42 as along with 12 people and 3 groups daveGerrard jjray brant balicea sebastien_vigneau grahamc emarker heliopais cisevol caseybrown emptyhb klo BergmanLab EisenLab cis-regulatory-evolution
	Why Are There Still Over 1000 Uncharacterized Yeast Genes? [My Copy] Genetics, Vol. 176, No. 1. (1 May 2007), pp. 7-14. by Lourdes Pena-Castillo, Timothy R. Hughes posted to cerevisiae genomics saccharomyces yeast by dbensasson on 2009-03-09 14:01:17 as along with 4 people and 7 groups dchughes neveaire cjeans biomcgary Biostatistics Computational-Genomics Bioinformatics Neuroscience G4ID Genetics-of-Gambling Marcotte_Lab
	Genome evolution in yeasts. [My Copy] Nature, Vol. 430, No. 6995. (1 July 2004), pp. 35-44. by B. Dujon, D. Sherman, G. Fischer, et al.P. Durrens, S. Casaregola, I. Lafontaine, J. De Montigny, C. Marck, C. Neuvéglise, E. Talla, N. Goffard, L. Frangeul, M. Aigle, V. Anthouard, A. Babour, V. Barbe, S. Barnay, S. Blanchin, J. M. Beckerich, E. Beyne, C. Bleykasten, A. Boisramé, J. Boyer, L. Cattolico, F. Confanioleri, A. De Daruvar, L. Despons, E. Fabre, C. Fairhead, H. Ferry-Dumazet, A. Groppi, F. Hantraye, C. Hennequin, N. Jauniaux, P. Joyet, R. Kachouri, A. Kerrest, R. Koszul, M. Lemaire, I. Lesur, L. Ma, H. Muller, J. M. Nicaud, M. Nikolski, S. Oztas, O. Ozier-Kalogeropoulos, S. Pellenz, S. Potier, G. F. Richard, M. L. Straub, A. Suleau, D. Swennen, F. Tekaia, M. Wésolowski-Louvel, E. Westhof, B. Wirth, M. Zeniou-Meyer, I. Zivanovic, M. Bolotin-Fukuhara, A. Thierry, C. Bouchier, B. Caudron, C. Scarpelli, C. Gaillardin, J. Weissenbach, P. Wincker, J. L. Souciet posted to genomics saccharomyces yeast by dbensasson on 2009-03-09 13:56:09 as along with 6 people and 3 groups evaf indigoviolet dchughes maximilianh dbenn nklee EisenLab G4ID Genetics-of-Gambling
	Rapid evolution of yeast centromeres in the absence of drive. [My Copy] Genetics, Vol. 178, No. 4. (April 2008), pp. 2161-2167. by D. Bensasson, M. Zarowiecki, A. Burt, V. Koufopanou posted to evolution genomics pop_gen population saccharomyces yeast by dbensasson on 2009-03-04 13:15:07 as
	Population genomics of domestic and wild yeasts [My Copy] Nature (February 2009) by Gianni Liti, David M. Carter, Alan M. Moses, et al.Jonas Warringer, Leopold Parts, Stephen A. James, Robert P. Davey, Ian N. Roberts, Austin Burt, Vassiliki Koufopanou, Isheng J. Tsai, Casey M. Bergman, Douda Bensasson, Michael J. T. Okelly, Alexander van Oudenaarden, David B. H. Barton, Elizabeth Bailes, Alex N. Nguyen, Matthew Jones, Michael A. Quail, Ian Goodhead, Sarah Sims, Frances Smith, Anders Blomberg, Richard Durbin, Edward J. Louis posted to biogeography cerevisiae genomics natural_history population saccharomyces yeast by dbensasson on 2009-02-18 14:41:27 as
	The effect of domestication on the fungal proteome [My Copy] Trends in Genetics, Vol. 25, No. 2. (February 2009), pp. 60-63. by Antonis Rokas posted to domestication genomics by dbensasson on 2009-02-18 14:41:26 as
	Comparative genomics of yeast strains isolated from diverse ecological niches unveils important genome diversity [My Copy] BMC Genomics, Vol. 9 (November 2008), 524. by Laura Carreto, Maria F. Eiriz, Ana C. Gomes, Patricia M. Pereira, Dorit Schuller, Manuel A. S. Santos posted to biogeography cerevisiae domestication genomics natural_history population saccharomyces yeast by dbensasson on 2009-02-18 14:41:26 as
	A Catalog of Neutral and Deleterious Polymorphism in Yeast [My Copy] PLoS Genet, Vol. 4, No. 8. (2008), e1000183. by Scott W. Doniger, Hyun S. Kim, Devjanee Swain, et al.Daniella Corcuera, Morgan Williams, Shiaw P. Yang, Justin C. Fay posted to cerevisiae genomics population saccharomyces yeast by dbensasson on 2009-02-18 14:41:26 as
	Identification of functional transcription factor binding sites using closely related Saccharomyces species. [My Copy] Genome Res, Vol. 15, No. 5. (May 2005), pp. 701-709. by S. W. Doniger, J. Huh, J. C. Fay posted to cerevisiae genomics population saccharomyces yeast by dbensasson on 2009-02-18 14:41:26 as
	Population genomic analysis of outcrossing and recombination in yeast [My Copy] Nature Genetics, Vol. 38, No. 9. (06 August 2006), pp. 1077-1081. by Douglas M. Ruderfer, Stephen C. Pratt, Hannah S. Seidel, Leonid Kruglyak posted to evolution genomics pop_gen yeast by dbensasson on 2008-05-28 22:09:22 as
	Ecological and evolutionary genomics of Saccharomyces cerevisiae [My Copy] Molecular Ecology, Vol. 15, No. 3. (March 2006), pp. 575-591. by Christian R. Landry, Jeffrey P. Townsend, Daniel L. Hartl, Duccio Cavalieri posted to ecology evolution genomics pop_gen yeast biogeography cerevisiae natural_history population saccharomyces by dbensasson on 2008-05-26 10:03:53 as along with 1 person i41m
	Quality scores and SNP detection in sequencing-by-synthesis systems [My Copy] Genome Research, Vol. 18, No. 5. (22 May 2008), pp. 763-770. by William Brockman, Pablo Alvarez, Sarah Young, et al.Manuel Garber, Georgia Giannoukos, William L. Lee, Carsten Russ, Eric S. Lander, Chad Nusbaum, David B. Jaffe posted to genomics by dbensasson on 2008-05-26 09:53:45 as along with 13 people humburg n00c jonilaserson jsatkosk maren natstreet druvus cap1 caseybrown bpb Neeperando sharpton GustavoLacerda
	The complete genome of an individual by massively parallel DNA sequencing [My Copy] Nature, Vol. 452, No. 7189. (17 April 2008), pp. 872-876. by David A. Wheeler, Maithreyan Srinivasan, Michael Egholm, et al.Yufeng Shen, Lei Chen, Amy McGuire, Wen He, Yi-Ju Chen, Vinod Makhijani, G. Thomas Roth, Xavier Gomes, Karrie Tartaro, Faheem Niazi, Cynthia L. Turcotte, Gerard P. Irzyk, James R. Lupski, Craig Chinault, Xing-zhi Song, Yue Liu, Ye Yuan, Lynne Nazareth, Xiang Qin, Donna M. Muzny, Marcel Margulies, George M. Weinstock, Richard A. Gibbs, Jonathan M. Rothberg posted to genomics human pop_gen by dbensasson on 2008-05-26 09:48:15 as along with 23 people and 2 groups rshe n00c jonilaserson jessopher daforerog behindtherabbit frohike reyez pengchy adijr jo_davies jfr orzenil dullhunk djkt ramensky psique caseybrown melting bpb Neeperando Huub_odc guhjy parkinson's disease references microbiology_nijmegen
	Revisiting the Saccharomyces cerevisiae predicted ORFeome. [My Copy] Genome research, Vol. 18, No. 8. (23 August 2008), pp. 1294-1303. by Qian-Ru R. Li, Anne-Ruxandra R. Carvunis, Haiyuan Yu, et al.Jing-Dong D. Han, Quan Zhong, Nicolas Simonis, Stanley Tam, Tong Hao, Niels J. Klitgord, Denis Dupuy, Danny Mou, Ilan Wapinski, Aviv Regev, David E. Hill, Michael E. Cusick, Marc Vidal posted to genomics yeast by dbensasson on 2008-05-26 09:42:37 as along with 6 people and 1 group biomcgary kiekyon stajich nklee biehl guhjy Mycology

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