dbikard's library 476 articles Export

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	Exceptional structured noncoding RNAs revealed by bacterial metagenome analysis [My Copy] Nature In Nature, Vol. 462, No. 7273. (03 December 2009), pp. 656-659. by Zasha Weinberg, Jonathan Perreault, Michelle M. Meyer, Ronald R. Breaker posted to structure rna metagenome by dbikard on 2009-12-08 11:19:17 as along with 7 people and 3 groups parnell tmmurali chvlyl jarretinha djkt neils stajich Journal picks iSEEM Mycology
	Automated unrestricted multigene recombineering for multiprotein complex production [My Copy] Nature Methods, Vol. 6, No. 6. (03 May 2009), pp. 447-450. by Christoph Bieniossek, Yan Nie, Daniel Frey, et al.Natacha Olieric, Christiane Schaffitzel, Ian Collinson, Christophe Romier, Philipp Berger, Timothy J. Richmond, Michel O. Steinmetz, Imre Berger posted to synthetic_biology recombinant_protein gene_expression escherichia_coli by dbikard on 2009-11-05 19:39:09 as along with 3 people austin zwang guhjy
	The tragedy of the commons in microbial populations: insights from theoretical, comparative and experimental studies [My Copy] Heredity, Vol. 100, No. 5. (24 October 2007), pp. 471-477. by R. C. MacLean posted to bacteria cooperation population by dbikard on 2008-12-16 10:06:42 as along with 2 people and 1 group druvus Katje microbiology_nijmegen
	The genetical evolution of social behaviour. I [My Copy] Journal of Theoretical Biology, Vol. 7, No. 1. (July 1964), pp. 1-16. by W. Hamilton posted to cooperation evolution by dbikard on 2008-12-11 15:34:37 as along with 2 people Koh jagarciag
	Bacterial outer membrane vesicles and the host-pathogen interaction [My Copy] Genes Dev., Vol. 19, No. 22. (15 November 2005), pp. 2645-2655. by Meta J. Kuehn, Nicole C. Kesty posted to pathogen vesicle by dbikard on 2008-04-17 07:30:07 as
	Stochastic switching as a survival strategy in fluctuating environments [My Copy] Nat Genet, Vol. 40, No. 4. (April 2008), pp. 471-475. by Murat Acar, Jerome T. Mettetal, Alexander van Oudenaarden posted to noise switch by dbikard on 2008-03-28 16:40:00 as along with 13 people and 1 group balabu lbnc stefanjanusz A_Olympia operon jjray gokhan margaritis bootsy qwermish fjvico osilander brianb GEB
	Cruciform formation in a negatively supercoiled DNA may be kinetically forbidden under physiological conditions [My Copy] Cell, Vol. 33, No. 3. (July 1983), pp. 817-829. by Albert J. Courey, James C. Wang posted to dna_coiling dna_folding by dbikard on 2008-03-28 16:38:17 as
	Tunability and noise dependence in differentiation dynamics. [My Copy] Science (New York, N.Y.), Vol. 315, No. 5819. (23 March 2007), pp. 1716-1719. by Gürol M. Süel, Rajan P. Kulkarni, Jonathan Dworkin, Jordi Garcia-Ojalvo, Michael B. Elowitz posted to differentiation genetic_circuits networks noise regulation subtilis by dbikard on 2008-01-31 10:30:01 as along with 5 people and 2 groups samubernard lauresultan jjray margaritis zwang Centre de Recherches Interdisciplinaires SynBioSys
	Simplicity in biology [My Copy] Nature, Vol. 446, No. 7135. (28 March 2007), pp. 497-497. by Uri Alon posted to networks simplicity systems_biology by dbikard on 2008-01-29 19:40:28 as along with 7 people and 2 groups Scis0000002 robfsouza reyez taylan Pascalichouchou karfunkel nsamways Centre de Recherches Interdisciplinaires SynBioSys
	Molecular biology: RNA rules [My Copy] Nature, Vol. 451, No. 7175. (09 January 2008), pp. 131-132. by Meng-Chao Yao posted to gene_shuffling protozoan rna by dbikard on 2008-01-29 16:43:23 as along with 3 people and 1 group mtagaya sebastien_vigneau rebeccamancy Centre de Recherches Interdisciplinaires
	Mechanisms of Site-Specific Recombination* [My Copy] Annual Review of Biochemistry, Vol. 75, No. 1. (2006), pp. 567-605. by Nigel D. F. Grindley, Katrine L. Whiteson, Phoebe A. Rice posted to recombination by dbikard on 2008-01-29 15:31:36 as along with 1 person balicea
	Multivalent avimer proteins evolved by exon shuffling of a family of human receptor domains [My Copy] Nature Biotechnology, Vol. 23, No. 12. (20 November 2005), pp. 1556-1561. by Joshua Silverman, Qiang Lu, Alice Bakker, et al.Wayne To, Amy Duguay, Ben M. Alba, Richard Smith, Alberto Rivas, Peng Li, Hon Le, Erik Whitehorn, Kevin W. Moore, Candace Swimmer, Victor Perlroth, Martin Vogt, Joost Kolkman, Willem posted to gene_shuffling by dbikard on 2007-07-01 21:14:03 as
	Genome shuffling leads to rapid phenotypic improvement in bacteria. [My Copy] Nature, Vol. 415, No. 6872. (7 February 2002), pp. 644-646. by Y. X. Zhang, K. Perry, V. A. Vinci, K. Powell, W. P. Stemmer, S. B. del Cardayré posted to gene_shuffling by dbikard on 2007-04-27 10:46:20 as
	Engineering of the pyruvate dehydrogenase bypass in Saccharomyces cerevisiae for high-level production of isoprenoids. [My Copy] Metab Eng, Vol. 9, No. 2. (March 2007), pp. 160-168. by Y. Shiba, E. M. Paradise, J. Kirby, D. K. Ro, J. D. Keasling posted to synthetic_biology by dbikard on 2007-04-23 18:25:12 as
	Synthetic cooperation in engineered yeast populations. [My Copy] Proc Natl Acad Sci U S A, Vol. 104, No. 6. (6 February 2007), pp. 1877-1882. by W. Shou, S. Ram, J. M. Vilar posted to synthetic_biology by dbikard on 2007-04-23 18:21:27 as along with 2 people fishtank austin
	Harnessing homologous recombination in vitro to generate recombinant DNA via SLIC. [My Copy] Nature methods, Vol. 4, No. 3. (11 March 2007), pp. 251-256. by M. Z. Li, S. J. Elledge posted to synthetic_biology by dbikard on 2007-03-19 10:34:26 as along with 9 people and 1 group Vincent_Rouilly daericks guhjy yeastyboy azazello faion pansapiens bala austin MBLAB
	Noise in eukaryotic gene expression. [My Copy] Nature, Vol. 422, No. 6932. (10 April 2003), pp. 633-637. by William J. Blake, Mads KAErn, Charles R. Cantor, J. J. Collins posted to noise by dbikard on 2007-02-08 13:21:16 as along with 10 people guhjy kentz katiehumphry ClaireFB rklancer cottrell margaritis mjoach jiny klo
	Non-genetic individuality: chance in the single cell. [My Copy] Nature, Vol. 262, No. 5568. (5 August 1976), pp. 467-471. by J. L. Spudich, D. E. Koshland posted to noise by dbikard on 2007-02-04 17:57:46 as along with 1 person chrn
	Phenotypic Diversity, Population Growth, and Information in Fluctuating Environments [My Copy] Science, Vol. 309, No. 5743. (23 September 2005), pp. 2075-2078. by Edo Kussell, Stanislas Leibler posted to noise by dbikard on 2007-01-31 19:15:51 as along with 8 people chiufanlee yyfwuhan bernadettgaal rklancer monod jjray mhucka zambujo
	Predicting stochastic gene expression dynamics in single cells. [My Copy] Proc Natl Acad Sci U S A, Vol. 103, No. 19. (9 May 2006), pp. 7304-7309. by J. T. Mettetal, D. Muzzey, J. M. Pedraza, E. M. Ozbudak, A. van Oudenaarden posted to noise by dbikard on 2007-01-31 19:09:30 as along with 6 people joseph_x_zhou madhadron jiyu proulx margaritis ddcttrl
	Regulation of noise in the expression of a single gene. [My Copy] Nat Genet, Vol. 31, No. 1. (May 2002), pp. 69-73. by E. M. Ozbudak, M. Thattai, I. Kurtser, A. D. Grossman, A. van Oudenaarden posted to noise by dbikard on 2007-01-31 19:09:14 as along with 14 people balabu pkm roys rklancer rahmilale mhucka margaritis kfm9876 vladimirov jiny dylanwalker klo austin jjray
	Phenotypic Consequences of Promoter-Mediated Transcriptional Noise [My Copy] Molecular Cell, Vol. 24, No. 6. (28 December 2006), pp. 853-865. by William J. Blake, Gabor Balazsi, Michael A. Kohanski, et al.Farren J. Isaacs, Kevin F. Murphy, Yina Kuang, Charles R. Cantor, David R. Walt, James J. Collins posted to transcription noise by dbikard on 2007-01-24 13:20:47 as along with 3 people and 1 group emilyhare timflutre margaritis EisenLab
	The new role of the microchemostat in the bioengineering revolution. [My Copy] Conference proceedings : ... Annual International Conference of the IEEE Engineering in Medicine and Biology Society. IEEE Engineering in Medicine and Biology Society. Conference, Vol. 1 (2009), pp. 1064-1066. by Frederick K. Balagadde posted to synthetic_biology microfluidics chemostat by dbikard on 2009-12-08 13:16:58 as
	Long DNA palindromes, cruciform structures, genetic instability and secondary structure repair [My Copy] BioEssays, Vol. 16, No. 12. (1994), pp. 893-900. by David R. F. Leach posted to cruciform by dbikard on 2009-02-25 13:51:08 as
	Implementing arithmetic and other analytic operations by transcriptional regulation. [My Copy] PLoS computational biology, Vol. 4, No. 4. (April 2008) by S. M. Cory, T. J. Perkins posted to computational_biology synthetic_biology by dbikard on 2008-06-04 18:45:50 as along with 6 people and 1 group balabu bayesian jjray eskay maximilianh dquest SynBioSys
	Terpenoids: Opportunities for Biosynthesis of Natural Product Drugs Using Engineered Microorganisms. [My Copy] Mol Pharm (21 March 2008) by Parayil K. Ajikumar, Keith Tyo, Simon Carlsen, Oliver Mucha, Too H. Phon, Gregory Stephanopoulos posted to metabolic_engineering synthetic_biology terpenoids by dbikard on 2008-03-25 09:19:23 as along with 1 person apostola
	Host Participation in Plasmid Maintenance: Dependence upon dnaA of Replicons Derived from P1 and F [My Copy] Proceedings of the National Academy of Sciences, Vol. 83, No. 12. (15 June 1986), pp. 4423-4427. by Egon B. Hansen, Michael B. Yarmolinsky posted to plasmid dnaa replication by dbikard on 2008-02-29 14:36:49 as
	Genomic analysis of proteinDNA interactions in bacteria: insights into transcription and chromosome organization [My Copy] Molecular Microbiology, Vol. 65, No. 1. (July 2007), pp. 21-26. by Wade, T. Joseph, Struhl, et al. Kevin, Busby, J. W. Stephen, Grainger, C. David posted to gene_expression heat_shock transcription by dbikard on 2008-01-29 14:19:56 as along with 2 people cam-swarmers brant
	Building a Parallel Metabolism within the Cell [My Copy] ACS Chem. Biol. (4 January 2008) by Aleksandra Filipovska, Oliver Rackham posted to metabolic_engineering synthetic_biology by dbikard on 2008-01-14 16:59:30 as along with 2 people austin grahamc
	Rational design and assembly of synthetic trimodular polyketide synthases. [My Copy] Chem Biol, Vol. 14, No. 2. (February 2007), pp. 143-151. by H. G. Menzella, J. R. Carney, D. V. Santi posted to polyketide by dbikard on 2008-01-14 12:58:00 as
	Rational design of aromatic polyketide natural products by recombinant assembly of enzymatic subunits [My Copy] Nature, Vol. 375, No. 6532. (15 June 1995), pp. 549-554. by Robert Mcdaniel, Susanne Ebert-Khosla, David Hopwood, A., Chaitan Khosla posted to design polyketide by dbikard on 2008-01-14 12:55:39 as
	Guiding Bacteria with Small Molecules and RNA. [My Copy] J Am Chem Soc (5 May 2007) by Shana Topp, Justin P. Gallivan posted to rna synthetic_biology by dbikard on 2007-05-15 16:38:07 as
	From Never Born Proteins to Minimal Living Cells: Two Projects in Synthetic Biology [My Copy] Origins of Life and Evolution of the Biosphere, Vol. 36, No. 5-6. (December 2006), pp. 605-616. by Luisi, Pier, Chiarabelli, Cristiano, Stano, Pasquale posted to synthetic_biology by dbikard on 2007-04-23 18:36:29 as along with 1 person grahamc
	Production of isoprenoid pharmaceuticals by engineered microbes. [My Copy] Nat Chem Biol, Vol. 2, No. 12. (December 2006), pp. 674-681. by M. C. Chang, J. D. Keasling posted to synthetic_biology by dbikard on 2007-04-23 18:35:25 as along with 1 person austin
	Pathway engineering by designed divergent evolution. [My Copy] Curr Opin Chem Biol (10 March 2007) by Yasuo Yoshikuni, Jay D D. Keasling posted to synthetic_biology by dbikard on 2007-03-21 11:03:25 as
	Stochastic mechanisms in geneâexpression [My Copy] Proceedings of the National Academy of Sciences of the United States of America, Vol. 94, No. 3. (4 February 1997), pp. 814-819. by HarleyâH McAdams, Adam Arkin posted to noise by dbikard on 2007-02-04 18:04:56 as along with 9 people and 1 group pkm burnettjc ddcttrl os252 litam rflrob margaritis petermilner dylanwalker Centre de Recherches Interdisciplinaires
	Programmed population control by cell-cell communication and regulated killing. [My Copy] Nature, Vol. 428, No. 6985. (22 April 2004), pp. 868-871. by L. You, R. S. Cox, R. Weiss, F. H. Arnold posted to synthetic_biology by dbikard on 2006-12-07 09:23:40 as along with 5 people rklancer tuck johncumbers margaritis discreteonyxorb
	DESIGN OF GENE CIRCUITS: LESSONS FROM BACTERIA [My Copy] Nat Rev Genet, Vol. 5, No. 1. (January 2004), pp. 34-42. by Michael E. Wall, William S. Hlavacek, Michael A. Savageau posted to gene_expression synthetic_biology by dbikard on 2006-11-16 08:47:17 as along with 3 people jmeppley balicea sharatjv
	Programmable cells: interfacing natural and engineered gene networks. [My Copy] Proc Natl Acad Sci U S A, Vol. 101, No. 22. (1 June 2004), pp. 8414-8419. by H. Kobayashi, M. Kaern, M. Araki, et al.K. Chung, T. S. Gardner, C. R. Cantor, J. J. Collins posted to synthetic_biology by dbikard on 2006-11-13 10:20:03 as along with 3 people rklancer snowcrash austin
	Engineering of GAL1 promoter-driven expression system with artificial transcription factors. [My Copy] Biochem Biophys Res Commun (17 October 2006) by Kyung-Soon S. Park, Jin-Soo S. Kim posted to synthetic_biology by dbikard on 2006-11-13 09:19:17 as along with 1 person kfm9876
	A bottom-up approach to gene regulation. [My Copy] Nature, Vol. 439, No. 7078. (16 February 2006), pp. 856-860. by Nicholas J. Guido, Xiao Wang, David Adalsteinsson, et al.David McMillen, Jeff Hasty, Charles R. Cantor, Timothy C. Elston, J. J. Collins posted to gene_expression genetic_circuits synthetic_biology by dbikard on 2006-11-09 10:42:20 as along with 18 people and 2 groups genocad bertelsen Scis0000002 raik rklancer snuppepuppan guhjy okarsligil bayesian balicea samal madhadron balabu johncumbers mmt proulx nklee tmmurali Bioinformatics SynBioSys
	Computational design and experimental validation of oligonucleotide-sensing allosteric ribozymes [My Copy] Nature Biotechnology, Vol. 23, No. 11. (23 October 2005), pp. 1424-1433. by Robert Penchovsky, Ronald R. Breaker posted to computational_biology synthetic_biology by dbikard on 2006-11-09 10:38:11 as along with 4 people and 2 groups reyez rklancer marcius austin BioinfoCIPF SGU-CIPF
	Substrate interactions and promiscuity in a viral DNA packaging motor [My Copy] Nature In Nature, Vol. 461, No. 7264. (01 October 2009), pp. 669-673. by K. Aathavan, Adam T. Politzer, Ariel Kaplan, et al.Jeffrey R. Moffitt, Yann R. Chemla, Shelley Grimes, Paul J. Jardine, Dwight L. Anderson, Carlos Bustamante posted to single_molecule phage packaging motor atpase by dbikard on 2009-12-09 08:23:44 as along with 3 people Fernando_FF jjturner alexknight
	Real-time kinetics of gene activity in individual bacteria. [My Copy] Cell, Vol. 123, No. 6. (16 December 2005), pp. 1025-1036. by Ido Golding, Johan Paulsson, Scott M. Zawilski, Edward C. Cox posted to transcription mrna kinetics bacteria by dbikard on 2009-12-08 13:52:50 as along with 7 people pkm yyfwuhan boko4ikameto jjray behindtherabbit balabu margaritis
	Microbiology. Necessary noise. [My Copy] Science, Vol. 317, No. 5837. (27 July 2007), pp. 463-464. by J. T. Mettetal, A. van Oudenaarden posted to gene_expression noise systems_biology by dbikard on 2008-02-06 15:42:43 as along with 2 groups Centre de Recherches Interdisciplinaires SynBioSys
	Enhancement of cellular memory by reducing stochastic transitions [My Copy] Nature, Vol. 435, No. 7039., pp. 228-232. by Murat Acar, Attila Becskei, Alexander v. van Oudenaarden posted to memory noise synthetic_biology systems_biology by dbikard on 2008-02-01 17:23:55 as along with 7 people and 1 group balabu jjray rklancer crmind balicea mhucka kfm9876 SynBioSys
	Programming gene expression with combinatorial promoters [My Copy] Molecular Systems Biology In Mol Syst Biol, Vol. 3 (13 November 2007) by Robert S. Cox, Michael G. Surette, Michael B. Elowitz posted to gene_expression promoter synthetic_biology by dbikard on 2008-01-31 19:13:53 as along with 16 people and 3 groups balabu Synthetic_Biology_Literature Retchless tmmurali austin dpollard balicea kengg margaritis lusk cjeans zwang discreteonyxorb cabbagezs Ema tresch TranscriptionalRegulationWithThermodynamicModels EisenLab SynBioSys
	Extensive functional overlap between σ factors in Escherichia coli [My Copy] Nature Structural & Molecular Biology, Vol. 13, No. 9. (06 August 2006), pp. 806-814. by Joseph T. Wade, Daniel C. Roa, David C. Grainger, et al.Douglas Hurd, Stephen J. W. Busby, Kevin Struhl, Evgeny Nudler posted to gene_expression heat_shock transcription by dbikard on 2008-01-29 14:24:03 as
	Identification of a heat shock promoter in the topA gene of Escherichia coli. [My Copy] J. Bacteriol., Vol. 172, No. 12. (1 December 1990), pp. 6871-6874. by S. A. Lesley, S. B. Jovanovich, Y. C. Tse-Dinh, R. R. Burgess posted to gene_expression heat_shock by dbikard on 2008-01-29 13:56:06 as
	High efficiency mutagenesis, repair, and engineering of chromosomal DNA using single-stranded oligonucleotides [My Copy] Proceedings of the National Academy of Sciences, Vol. 98, No. 12. (5 June 2001), pp. 6742-6746. by Hilary M. Ellis, Daiguan Yu, Tina Ditizio, Donald L. Court posted to chromosome methods mutagenesis by dbikard on 2008-01-21 16:25:53 as

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synthetic_biology	105
evolution	71
replication	55
single_strand	49
hairpin	47
cooperation	40
gene_expression	40
integrons	32
recombination	31
cruciform	30
escherichia_coli	30
phage	27
dna_coiling	25
bacteria	24
noise	22
plasmid	22
promoter	21
dna_folding	17
transcription	17
chromosome	14
conjugation	13
networks	12
pria	12
protein	11
mutagenesis	11
genetic_circuits	10
transposon	10
rolling-circle	10
vibrio	9
rna	9
antibiotics	9
systems_biology	8
hk022	8
lambda	7
dnaa	7
horizontal_gene_transfer	6
metabolic_engineering	6
in_vivo	6
kin-selection	6
dna	6
resistance	6
directed_evolution	5
primases	5
genome	5
genetic_code	5
regulation	5
computational_biology	5
tryptophan	5
eucaryotes	4
bgp	4
relaxases	4
linker	4
review	4
epistemology	3
oscillations	3
toxinantitoxin	3
science	3
xna	3
methods	3
protein_design	3
integrase	3
dnag	3
sos	3
polyketide	3
heat_shock	3
plasticity	3
gene_shuffling	3
subtilis	3
evolvability	3
switch	3
dna_repair	3
protein_structure	2
virus	2
persistence	2
lactose_operon	2
cell_size	2
microfluidics	2
communication	2
chemostat	2
differentiation	2
feedback	2
biofuel	2
fusion_protein	2
transduction	2
synthetic_dna	2
cloning	2
population	2
pathogen	2
physics	2
flagella	2
microscopy	2
music	2
integron	2
phylogeny	2
gene_networks	2
segregation	2
book	2
single_cell	2
virulence	1
aging	1
microsatellite	1
model	1
fluorescence	1
ligand_binding	1
competition	1
old_paper	1
division	1
humans	1
transformation	1
repair	1
molecular_biology	1
behaviour	1
bet_hedging	1
single_molecule	1
amoeba	1
structure	1
logic	1
meetings	1
streptomyces	1
statistics	1
fun	1
chemotaxis	1
volvox	1
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design	1
polyploidy	1
simplicity	1
asymmetry	1
protein_engineering	1
ssb	1
synechocystis	1
ssra	1
kin	1
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electricity	1
protein_domain	1
recombinant_protein	1
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terpenoids	1
kinetics	1
therapy	1
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operon	1
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psc101	1
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aa	1
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brain_plasticity	1
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time_lapse	1
degradation	1
algorithm	1
atpase	1
ribosome_binding_site	1
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mutation_rate	1
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cyanobacteria	1
annotation	1
telomeres	1
quorum-sensing	1
excretion	1
intron	1
optimization	1
lac_repressor	1
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ecology	1
multicellularity	1
terminator	1
cheater	1
stochasticity	1
hyperproduction	1
robustness	1
molecular	1
vesicle	1
motor	1
holliday_junction	1

dbikard's library 476 articles Export

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