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dbikard's synthetic_biology [68 articles]

Recent papers added to dbikard's library classified by the tag synthetic_biology. You can also see everyone's synthetic_biology.
  • Synthetic biology--putting engineering into biology
    Bioinformatics, Vol. 22, No. 22. (15 November 2006), pp. 2790-2799.
    by Matthias Heinemann, Sven Panke
    posted to synthetic_biology by dbikard on 2008-09-28 15:52:28 as ** along with 6 people and 3 groups aalibes marcius jtaylor Freecat fishtank karfunkel SynBioSys BioinfoCIPF SGU-CIPF
  • Synthetic biology: discovering new worlds and new words. The new and not so new aspects of this emerging research field
    EMBO Reports, Vol. aop, No. current. (22 August 2008)
    by Victor de Lorenzo, Antoine Danchin
    posted to synthetic_biology by dbikard on 2008-09-05 14:58:19 as ** along with 1 person and 1 group cambray SynBioSys
  • Robust, Tunable Biological Oscillations from Interlinked Positive and Negative Feedback Loops
    Science, Vol. 321, No. 5885. (4 July 2008), pp. 126-129.
    by Tony Y Tsai, Yoon S Choi, Wenzhe Ma, Joseph R Pomerening, Chao Tang, James E Ferrell
    posted to networks oscillations synthetic_biology by dbikard on 2008-07-17 11:17:58 as ** along with 5 people and 1 group madhadron Borelli kentsis caseybrown stringertheory SynBioSys
  • Setting the standard in synthetic biology
    Nat Biotech, Vol. 26, No. 7. (July 2008), pp. 771-774.
    by Adam Arkin
    posted to synthetic_biology by dbikard on 2008-07-11 09:49:43 as ** along with 3 people marck grahamc austin
  • Redesigning enzymes based on adaptive evolution for optimal function in synthetic metabolic pathways.
    Chemistry & biology, Vol. 15, No. 6. (June 2008), pp. 607-618.
    by Y Yoshikuni, JA Dietrich, FF Nowroozi, PC Babbitt, JD Keasling
    posted to metabolic_engineering synthetic_biology by dbikard on 2008-06-20 10:52:24 as ** along with 1 person and 1 group grahamc SynBioSys
  • Implementing arithmetic and other analytic operations by transcriptional regulation.
    PLoS computational biology, Vol. 4, No. 4. (April 2008)
    by SM Cory, TJ Perkins
    posted to computational_biology synthetic_biology by dbikard on 2008-06-04 18:45:50 as **** along with 5 people and 1 group bayesian jjray eskay maximilianh dquest SynBioSys
  • Rational design of memory in eukaryotic cells.
    Genes Dev, Vol. 21, No. 18. (15 September 2007), pp. 2271-2276.
    by CM Ajo-Franklin, DA Drubin, JA Eskin, EP Gee, D Landgraf, I Phillips, PA Silver
    posted to synthetic_biology by dbikard on 2008-06-02 10:20:01 as ** along with 4 people and 1 group austin cjeans balabu grahamc SynBioSys
  • Designing biological systems.
    Genes Dev, Vol. 21, No. 3. (1 February 2007), pp. 242-254.
    by DA Drubin, JC Way, PA Silver
    posted to synthetic_biology by dbikard on 2008-06-02 10:18:29 as ** along with 5 people and 1 group tmmurali choonpeng hslee snowcrash grahamc SynBioSys
  • Enhancement of Cell Type Specificity by Quantitative Modulation of a Chimeric Ligand
    J. Biol. Chem., Vol. 283, No. 13. (28 March 2008), pp. 8469-8476.
    by Pablo Cironi, Ian A Swinburne, Pamela A Silver
    posted to synthetic_biology by dbikard on 2008-06-02 10:17:03 as **
  • Defossiling Fuel: How Synthetic Biology Can Transform Biofuel Production
    ACS Chem. Biol., Vol. 3, No. 1. (18 January 2008), pp. 13-16.
    by David Savage, , Jeffrey Way, Pamela A Silver
    posted to synthetic_biology by dbikard on 2008-06-02 10:15:22 as ** along with 4 people and 1 group SciNika austin cambray grahamc SynBioSys
  • Foundations for engineering biology
    Nature, Vol. 438, No. 7067., pp. 449-453.
    by Drew Endy
    posted to synthetic_biology by dbikard on 2008-05-30 13:55:20 as ** along with 9 people and 1 group monod jmeppley eweaver perrywoo johncumbers pirapira kevinchannon austin grahamc SynBioSys
  • Design of artificial cell-cell communication using gene and metabolic networks.
    Proc Natl Acad Sci U S A, Vol. 101, No. 8. (24 February 2004), pp. 2299-2304.
    by T Bulter, SG Lee, WW Wong, E Fung, MR Connor, JC Liao
    posted to communication synthetic_biology by dbikard on 2008-05-29 15:19:33 as ** along with 2 people and 2 groups camster rklancer dbk-lab SynBioSys
  • Customized signaling with reconfigurable protein scaffolds
    Nature Biotechnology, Vol. 26, No. 5., pp. 526-528.
    by Patrick Guye, Ron Weiss
    posted to synthetic_biology by dbikard on 2008-05-29 14:13:25 as ** along with 1 person and 1 group grahamc SynBioSys
  • [The importance of synthetic biology.]
    Medecine sciences : M/S, Vol. 24, No. 5. (May 2008), pp. 447-448.
    by M Morange
    posted to synthetic_biology by dbikard on 2008-05-13 09:16:07 as **
  • [First French team success during iGEM Synthetic biology competition.]
    Medecine sciences : M/S, Vol. 24, No. 5. (May 2008), pp. 541-544.
    by David Bikard, François Képès,
    posted to synthetic_biology by dbikard on 2008-05-13 09:15:35 as **
  • Recursive construction of perfect DNA molecules from imperfect oligonucleotides.
    Molecular systems biology, Vol. 4 (2008)
    by G Linshiz, TB Yehezkel, S Kaplan, I Gronau, S Ravid, R Adar, E Shapiro
    posted to synthetic_biology by dbikard on 2008-05-13 09:14:30 as ** along with 2 people and 2 groups Ema austin Centre de Recherches Interdisciplinaires SynBioSys
  • Synthetic biology: enormous possibility, exaggerated perils.
    Journal of biological engineering, Vol. 2, No. 1. (25 April 2008)
    by Zachary N Russ
    posted to synthetic_biology by dbikard on 2008-04-30 09:04:52 as ** along with 1 person grahamc
  • Neutral lipid biosynthesis in engineered Escherichia coli: jojoba oil-like wax esters and fatty acid butyl esters.
    Applied and environmental microbiology, Vol. 72, No. 2. (February 2006), pp. 1373-1379.
    by R Kalscheuer, T Stöveken, H Luftmann, U Malkus, R Reichelt, A Steinbüchel
    posted to lipids synthetic_biology by dbikard on 2008-04-10 15:32:49 as ** along with 1 person grahamc
  • Terpenoids: Opportunities for Biosynthesis of Natural Product Drugs Using Engineered Microorganisms.
    Mol Pharm (21 March 2008)
    by Parayil K Ajikumar, Keith Tyo, Simon Carlsen, Oliver Mucha, Too H Phon, Gregory Stephanopoulos
    posted to metabolic_engineering synthetic_biology terpenoids by dbikard on 2008-03-25 09:19:23 as ****
  • Enhancement of cellular memory by reducing stochastic transitions
    Nature, Vol. 435, No. 7039., pp. 228-232.
    by Murat Acar, Attila Becskei, Alexander v van Oudenaarden
    posted to memory noise synthetic_biology systems_biology by dbikard on 2008-02-01 17:23:55 as *** along with 5 people and 1 group rklancer crmind balicea mhucka kfm9876 SynBioSys
  • Cost–benefit theory and optimal design of gene regulation functions
    Phys. Biol., Vol. 4, No. 4. (December 2007), 229.
    by Tomer Kalisky, Erez Dekel, Uri Alon
    posted to gene_regulation synthetic_biology by dbikard on 2008-02-01 17:21:28 as ** along with 2 people and 1 group jjray Pascalichouchou SynBioSys
  • Design of gene circuits: lessons from bacteria.
    Nat Rev Genet, Vol. 5, No. 1. (January 2004), pp. 34-42.
    by ME Wall, WS Hlavacek, MA Savageau
    posted to genetic_circuits review synthetic_biology by dbikard on 2008-02-01 17:16:59 as ** along with 5 people and 2 groups rklancer icases monod jjray grahamc TNT SynBioSys
  • Computational design of a biologically active enzyme.
    Science, Vol. 304, No. 5679. (25 June 2004), pp. 1967-1971.
    by MA Dwyer, LL Looger, HW Hellinga
    posted to protein_design synthetic_biology by dbikard on 2008-01-31 19:32:45 as ** along with 3 people and 1 group apaydin gane5h grahamc SynBioSys
  • Programming gene expression with combinatorial promoters
    Mol Syst Biol, Vol. 3 (13 November 2007)
    by Robert S Cox, Michael G Surette, Michael B Elowitz
    posted to expression_regulation promoter synthetic_biology by dbikard on 2008-01-31 19:13:53 as *** along with 14 people and 2 groups Retchless tmmurali austin dpollard balicea kengg margaritis lusk cjeans zwang discreteonyxorb cabbagezs Ema tresch EisenLab SynBioSys
  • Network motifs: theory and experimental approaches
    Nature Reviews Genetics, Vol. 8, No. 6., pp. 450-461.
    by Uri Alon
    posted to networks synthetic_biology systems_biology by dbikard on 2008-01-29 19:36:36 as ** along with 17 people and 4 groups cswinburne dlobo kentz icases aalibes cmmorel jtaylor margaritis shigepong zwang grinfish Pascalichouchou xingxu karfunkel vietanh0 haarcuba Borelli GEB TNT Centre de Recherches Interdisciplinaires SynBioSys
  • Bottom-up genome assembly using the Bacillus subtilis genome vector
    Nature Methods, Vol. 5, No. 1. (09 December 2007), pp. 41-43.
    by Mitsuhiro Itaya, Kyoko Fujita, Azusa Kuroki, Kenji Tsuge
    posted to genome synthetic_biology by dbikard on 2008-01-14 17:04:57 as *** along with 1 person jyuh
  • Building a Parallel Metabolism within the Cell
    ACS Chem. Biol. (4 January 2008)
    by Aleksandra Filipovska, Oliver Rackham
    posted to metabolic_engineering synthetic_biology by dbikard on 2008-01-14 16:59:30 as **** along with 2 people austin grahamc
  • RNA synthetic biology
    Nature Biotechnology, Vol. 24, No. 5. (05 May 2006), pp. 545-554.
    by Farren J Isaacs, Daniel J Dwyer, James J Collins
    posted to rna synthetic_biology by dbikard on 2008-01-14 14:39:50 as read along with 6 people and 4 groups rklancer lingchong marcius balabu austin grahamc BioinfoCIPF SGU-CIPF Centre de Recherches Interdisciplinaires SynBioSys
  • Rewiring cellular morphology pathways with synthetic guanine nucleotide exchange factors
    Nature (21 May 2007)
    by Brian J Yeh, Robert J Rutigliano, Anrica Deb, Dafna Bar-Sagi, Wendell A Lim
    posted to cytoskeleton synthetic_biology by dbikard on 2008-01-14 13:44:27 as *** along with 3 people and 2 groups chad_davis balabu biomcgary Marcotte_Lab Centre de Recherches Interdisciplinaires
  • Synthetic biology: promises and challenges
    Mol Syst Biol, Vol. 3 (18 December 2007)
    by Luis Serrano
    posted to synthetic_biology by dbikard on 2008-01-14 10:36:26 as *** along with 8 people aalibes dullhunk johncumbers renatomilani Vincent_Rouilly austin fedman FedericoC
  • Regulatory dynamics of synthetic gene networks with positive feedback.
    J Mol Biol, Vol. 359, No. 4. (16 June 2006), pp. 1107-1124.
    by YT Maeda, M Sano
    posted to expression_regulation synthetic_biology by dbikard on 2007-05-29 17:49:14 as ***
  • Guiding Bacteria with Small Molecules and RNA.
    J Am Chem Soc (5 May 2007)
    by Shana Topp, Justin P Gallivan
    posted to rna synthetic_biology by dbikard on 2007-05-15 16:38:07 as ****
  • A synthetic biology challenge: making cells compute.
    Mol Biosyst, Vol. 3, No. 5. (May 2007), pp. 343-353.
    by C Tan, H Song, J Niemi, L You
    posted to synthetic_biology by dbikard on 2007-05-15 13:49:06 as ***
  • From Never Born Proteins to Minimal Living Cells: Two Projects in Synthetic Biology
    Origins of Life and Evolution of the Biosphere, Vol. 36, No. 5-6. (December 2006), pp. 605-616.
    by Luisi, Pier, Chiarabelli, Cristiano, Stano, Pasquale
    posted to synthetic_biology by dbikard on 2007-04-23 18:36:29 as **** along with 1 person grahamc
  • Production of isoprenoid pharmaceuticals by engineered microbes.
    Nat Chem Biol, Vol. 2, No. 12. (December 2006), pp. 674-681.
    by MC Chang, JD Keasling
    posted to synthetic_biology by dbikard on 2007-04-23 18:35:25 as **** along with 1 person austin
  • Engineering of the pyruvate dehydrogenase bypass in Saccharomyces cerevisiae for high-level production of isoprenoids.
    Metab Eng, Vol. 9, No. 2. (March 2007), pp. 160-168.
    by Y Shiba, EM Paradise, J Kirby, DK Ro, JD Keasling
    posted to synthetic_biology by dbikard on 2007-04-23 18:25:12 as *****
  • Expanding the metabolic engineering toolbox: more options to engineer cells.
    Trends Biotechnol, Vol. 25, No. 3. (March 2007), pp. 132-137.
    by KE Tyo, HS Alper, GN Stephanopoulos
    posted to synthetic_biology by dbikard on 2007-04-23 18:24:06 as *** along with 3 people cmmorel austin grahamc
  • Synthetic cooperation in engineered yeast populations.
    Proc Natl Acad Sci U S A, Vol. 104, No. 6. (6 February 2007), pp. 1877-1882.
    by W Shou, S Ram, JM Vilar
    posted to synthetic_biology by dbikard on 2007-04-23 18:21:27 as ***** along with 2 people fishtank austin
  • An excitable gene regulatory circuit induces transient cellular differentiation
    Nature, Vol. 440, No. 7083., pp. 545-550.
    by Gã¼rol M Sã¼el, Jordi Garcia-Ojalvo, Louisa M Liberman, Michael B Elowitz
    posted to synthetic_biology by dbikard on 2007-04-02 11:19:37 as ** along with 10 people and 1 group rklancer alexg madhadron balabu nickluscombe comb mhucka margaritis paurue jjray EBI-regulation
  • Designed divergent evolution of enzyme function
    Nature (22 February 2006)
    by Yasuo Yoshikuni, Thomas E Ferrin, Jay D Keasling
    posted to directed_evolution synthetic_biology by dbikard on 2007-04-02 11:17:34 as ** along with 3 people and 2 groups lingchong marcius tny BioinfoCIPF SGU-CIPF
  • Synthetic Biology: Caught between Property Rights, the Public Domain, and the Commons.
    PLoS Biol, Vol. 5, No. 3. (13 March 2007)
    by Arti Rai, James Boyle
    posted to synthetic_biology by dbikard on 2007-03-21 11:03:44 as *** along with 1 person grahamc
  • Pathway engineering by designed divergent evolution.
    Curr Opin Chem Biol (10 March 2007)
    by Yasuo Yoshikuni, Jay D D Keasling
    posted to synthetic_biology by dbikard on 2007-03-21 11:03:25 as ****
  • Harnessing homologous recombination in vitro to generate recombinant DNA via SLIC
    Nature Methods, Vol. 4, No. 3. (11 February 2007), pp. 251-256.
    by Mamie Z Li, Stephen J Elledge
    posted to synthetic_biology by dbikard on 2007-03-19 10:34:26 as ***** along with 8 people and 1 group daericks jyuh yeastyboy azazello faion pansapiens bala austin MBLAB
  • A synthetic multicellular system for programmed pattern formation
    Nature, Vol. 434, No. 7037., pp. 1130-1134.
    by Subhayu Basu, Yoram Gerchman, Cynthia H Collins, Frances H Arnold, Ron Weiss
    posted to synthetic_biology by dbikard on 2006-12-07 09:24:25 as *** along with 1 person rklancer
  • Programmed population control by cell-cell communication and regulated killing.
    Nature, Vol. 428, No. 6985. (22 April 2004), pp. 868-871.
    by L You, RS Cox, R Weiss, FH Arnold
    posted to synthetic_biology by dbikard on 2006-12-07 09:23:40 as **** along with 5 people rklancer tuck johncumbers margaritis discreteonyxorb
  • The engineering of gene regulatory networks.
    Annu Rev Biomed Eng, Vol. 5 (2003), pp. 179-206.
    by M Kaern, WJ Blake, JJ Collins
    posted to synthetic_biology by dbikard on 2006-11-22 14:50:57 as read along with 3 people rklancer biozhang2001 dylanwalker
  • DESIGN OF GENE CIRCUITS: LESSONS FROM BACTERIA
    Nat Rev Genet, Vol. 5, No. 1. (January 2004), pp. 34-42.
    by Michael E Wall, William S Hlavacek, Michael A Savageau
    posted to expression_regulation synthetic_biology by dbikard on 2006-11-16 08:47:17 as **** along with 3 people jmeppley balicea sharatjv
  • Engineered riboregulators enable post-transcriptional control of gene expression.
    Nat Biotechnol, Vol. 22, No. 7. (July 2004), pp. 841-847.
    by FJ Isaacs, DJ Dwyer, C Ding, DD Pervouchine, CR Cantor, JJ Collins
    posted to expression_regulation synthetic_biology by dbikard on 2006-11-15 15:13:04 as *** along with 4 people and 3 groups rklancer marcius BUiGEM austin BUiGEM BioinfoCIPF SGU-CIPF
  • Highly designable phenotypes and mutational buffers emerge from a systematic mapping between network topology and dynamic output
    PNAS, Vol. 103, No. 11. (14 March 2006), pp. 4180-4185.
    by Yigal D Nochomovitz, Hao Li
    posted to genetic_circuits synthetic_biology by dbikard on 2006-11-15 13:48:20 as * along with 1 person jtaylor
  • Optimization of a Stochastically-Integrated Gene Network Model via Simulated Annealing.
    Biophys J (18 August 2006)
    by Jonathan Tomshine, Yiannis Kaznessis
    posted to computational_biology synthetic_biology by dbikard on 2006-11-15 13:39:26 as *** along with 1 person yutianl
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