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Recent papers matching dbikard's watchlist criteria

	Getting a better picture of microbial evolution en route to a network of genomes. [My Copy] Philosophical transactions of the Royal Society of London. Series B, Biological sciences, Vol. 364, No. 1527. (12 August 2009), pp. 2187-2196. by Tal Dagan, William Martin posted to horizontal_gene_transfer evolution bacteria by jjray on 2009-12-09 05:52:19 as
	Lateral genetic transfer: open issues. [My Copy] Philosophical transactions of the Royal Society of London. Series B, Biological sciences, Vol. 364, No. 1527. (12 August 2009), pp. 2241-2251. by Mark A. Ragan, Robert G. Beiko posted to review horizontal_gene_transfer by jjray on 2009-12-09 05:47:09 as
	Principles of transcriptional control in the metabolic network of Saccharomyces cerevisiae. [My Copy] Nature biotechnology, Vol. 22, No. 1. (January 2004), pp. 86-92. by Jan Ihmels, Ronen Levy, Naama Barkai posted to yeast network metabolism gene_regulation by jjray on 2009-12-08 21:31:17 as along with 8 people and 4 groups icases adepace nickluscombe koller arne shung hryk siebert EisenLab EBI-regulation TNT dIEMoSIRIS
	Statistical Analysis of the Spatial Distribution of Operons in the Transcriptional Regulation Network of Escherichia coli [My Copy] Journal of Molecular Biology, Vol. 342, No. 5. (01 October 2004), pp. 1379-1390. by P. B. Warren, P. Rein ten Wolde posted to operon gene_regulation e_coli chromosome_organization bacteria by jjray on 2009-12-08 21:13:23 as
	Chance and necessity in chromosomal gene distributions [My Copy] Trends in Genetics, Vol. 24, No. 5. (May 2008), pp. 216-219. by Rutger Hermsen, Pieter Rein ten Wolde, Sarah Teichmann posted to gene_regulation chromosome_organization by jjray on 2009-12-08 21:09:21 as along with 1 person bpcusack
	Enzyme Localization Can Drastically Affect Signal Amplification in Signal Transduction Pathways [My Copy] In PLoS Comput Biol, Vol. 3, No. 10. (12 October 2007), e195. by Siebe B. van Albada, Pieter R. ten Wolde posted to stochastic spatial signaling noise enzyme by jjray on 2009-12-08 21:08:24 as
	Forward Flux Sampling for rare event simulations [My Copy] (24 Sep 2009) by Rosalind J. Allen, Chantal Valeriani, Pieter Rein ten Wolde posted to rare_events method forward_flux_sampling by jjray on 2009-12-08 21:06:26 as along with 2 people scratchmandoo gndlf
	Deciding fate in adverse times: Sporulation and competence in Bacillus subtilis [My Copy] In Proceedings of the National Academy of Sciences (7 December 2009) by Daniel Schultz, Peter G. Wolynes, Eshel B. Jacob, JosÃ© N. Onuchic posted to two-component_system sporulation signaling mathematical_model gene_regulation bacteria bacillus_subtilis by jjray on 2009-12-08 20:25:20 as
	Evidence against the selfish operon theory. [My Copy] Trends in genetics : TIG In Pagination error in this issue, see Publisher's note in Vol. 21 issue 1 p. 36, Vol. 20, No. 6. (1 June 2004), pp. 232-234. by Csaba Pál, Laurence D. Hurst posted to theory operon chromosome_organization by jjray on 2009-12-08 06:03:47 as along with 2 people rabu mjoach
	Eukaryotic systems broaden the scope of synthetic biology [My Copy] The Journal of cell biology In J. Cell Biol., Vol. 187, No. 5. (30 November 2009), pp. 589-596. by Karmella A. Haynes, Pamela A. Silver posted to synthetic_biology by karthikraman on 2009-12-04 10:03:44 as
	Computational design tools for synthetic biology [My Copy] Current Opinion in Biotechnology, Vol. 20, No. 4. (14 August 2009), pp. 479-485. by Mario Marchisio,, Jörg Stelling, posted to synthetic_biology software review modelling cad by Vincent_Rouilly on 2009-12-03 17:22:53 as along with 1 person pablocarb
	Statistical-mechanical study of evolution of robustness in noisy environments [My Copy] Physical Review E (Statistical, Nonlinear, and Soft Matter Physics), Vol. 80, No. 5. (2009), 051919. by Ayaka Sakata, Koji Hukushima, Kunihiko Kaneko posted to statistical_mechanics spin_glass robustness noise mutation evolutionary_dynamics evolution by jjray on 2009-12-01 19:24:26 as
	Why and How Bacteria Localize Proteins [My Copy] Science In Science, Vol. 326, No. 5957. (27 November 2009), pp. 1225-1228. by L. Shapiro, H. H. McAdams, R. Losick posted to spatial review localization bacteria by jjray on 2009-11-30 22:29:42 as along with 12 people and 3 groups th_chen paulymer ychang0918 jjturner anuragsethi dumont samjlord bobturner tapioka dlobo flbarroso eango moernerlab ronbun_2009au GEB
	Transcriptome Complexity in a Genome-Reduced Bacterium [My Copy] Science In Science, Vol. 326, No. 5957. (27 November 2009), pp. 1268-1271. by Marc Guell, Vera van Noort, Eva Yus, et al.Wei-Hua Chen, Justine Leigh-Bell, Konstantinos Michalodimitrakis, Takuji Yamada, Manimozhiyan Arumugam, Tobias Doerks, Sebastian Kuhner, Michaela Rode, Mikita Suyama, Sabine Schmidt, Anne-Claude Gavin, Peer Bork, Luis Serrano posted to network gene_regulation complexity chromosome_organization bacteria by jjray on 2009-11-30 22:28:24 as along with 9 people and 2 groups operon michaelbarton Scis0000002 chriswillmott Vincent_Rouilly djkt balabu jalorenzo epigenetics iSEEM molnet-macs
	The combination of positive and negative feedback loops confers exquisite flexibility to biochemical switches [My Copy] Physical Biology, Vol. 6, No. 4. (December 2009), 046013. by Benjamin Pfeuty, Kunihiko Kaneko posted to flexibility feedback bistability biochemistry by jjray on 2009-11-30 22:22:42 as
	Physical limits of feedback noise-suppression in biological networks [My Copy] Physical Biology, Vol. 6, No. 4. (December 2009), 046009. by Jiajun Zhang, Zhanjiang Yuan, Tianshou Zhou posted to noise network feedback biophysics by jjray on 2009-11-30 22:22:05 as
	A two-subunit bacterial Ï-factor activates transcription in Bacillus subtilis [My Copy] Proceedings of the National Academy of Sciences (25 November 2009) by Shawn R. MacLellan, Veronica Guariglia-Oropeza, Ahmed Gaballa, John D. Helmann posted to sigma_factor gene_regulation bacteria bacillus_subtilis by jjray on 2009-11-30 21:46:32 as
	The importance of engineering physiological functionality into microbes [My Copy] Trends in Biotechnology, Vol. 27, No. 12. (28 December 2009), pp. 664-672. by Yanping Zhang, Yan Zhu, Yang Zhu, Yin Li posted to synthetic_biology review metabolic_engineering biotechnology by Vincent_Rouilly on 2009-11-28 16:18:19 as
	Regulation of nonspecific acid phosphatase in Salmonella: phoN and phoP genes. [My Copy] J. Bacteriol., Vol. 138, No. 1. (1 April 1979), pp. 155-161. by L. D. Kier, R. M. Weppelman, B. N. Ames posted to salmonella phopq gene_regulation bacteria by jjray on 2009-11-25 22:50:20 as
	The appearance of pyrrolysine in tRNAHis guanylyltransferase by neutral evolution [My Copy] Proceedings of the National Academy of Sciences (24 November 2009) by Ilka U. Heinemann, Patrick O'Donoghue, Catherine Madinger, et al.Jack Benner, Lennart Randau, Christopher J. Noren, Dieter SÃ¶ll posted to neutral_evolution evolution biochemistry amino_acid by jjray on 2009-11-25 15:57:14 as
	A nonparametric view of network models and NewmanâGirvan and other modularities [My Copy] Proceedings of the National Academy of Sciences (23 November 2009) by Peter J. Bickel, Aiyou Chen posted to network modularity graph_theory by jjray on 2009-11-24 17:15:42 as
	Salmonella typhimurium phoP virulence gene is a transcriptional regulator. [My Copy] Proceedings of the National Academy of Sciences of the United States of America, Vol. 86, No. 18. (September 1989), pp. 7077-7081. by E. A. Groisman, E. Chiao, C. J. Lipps, F. Heffron posted to two-component_system signaling salmonella phopq gene_regulation bacteria by jjray on 2009-11-23 23:34:35 as
	A PhoP-repressed gene promotes Salmonella typhimurium invasion of epithelial cells. [My Copy] Journal of bacteriology, Vol. 175, No. 14. (July 1993), pp. 4475-4484. by I. Behlau, S. I. Miller posted to two-component_system signaling salmonella phopq gene_regulation bacteria by jjray on 2009-11-23 23:34:25 as
	A two-component regulatory system (phoP phoQ) controls Salmonella typhimurium virulence. [My Copy] Proceedings of the National Academy of Sciences of the United States of America, Vol. 86, No. 13. (July 1989), pp. 5054-5058. by S. I. Miller, A. M. Kukral, J. J. Mekalanos posted to two-component_system signaling salmonella phopq bacteria by jjray on 2009-11-23 23:34:01 as
	The role of the PhoP/PhoQ regulon in Salmonella virulence. [My Copy] Research in microbiology, Vol. 145, No. 5-6. (g 1994), pp. 473-480. by E. Garcia Véscovi, F. C. Soncini, E. A. Groisman posted to two-component_system signaling salmonella gene_regulation bacteria by jjray on 2009-11-23 23:27:49 as
	Inherent noise can facilitate coherence in collective swarm motion. [My Copy] Proceedings of the National Academy of Sciences of the United States of America, Vol. 106, No. 14. (7 April 2009), pp. 5464-5469. by Christian A. Yates, Radek Erban, Carlos Escudero, et al.Iain D. Couzin, Jerome Buhl, Ioannis G. Kevrekidis, Philip K. Maini, David J. Sumpter posted to theory spatial noise fokker-planck agent_based by jjray on 2009-11-23 22:59:35 as along with 2 people ocs deanmalmgren
	Plasmid insertion mutagenesis and lac gene fusion with mini-mu bacteriophage transposons. [My Copy] Journal of bacteriology, Vol. 158, No. 2. (May 1984), pp. 488-495. by B. A. Castilho, P. Olfson, M. J. Casadaban posted to phage method bacteria by jjray on 2009-11-23 22:27:11 as
	Transcriptional activity of the transposable element Tn10 in the Salmonella typhimurium ilvGEDA operon. [My Copy] Proceedings of the National Academy of Sciences of the United States of America, Vol. 79, No. 16. (August 1982), pp. 5011-5015. by D. L. Blazey, R. O. Burns posted to salmonella polarity gene_expression bacteria by jjray on 2009-11-23 21:51:02 as
	Transcriptional polarity enhances the contribution of the internal promoter, ilvEp, in the expression of the ilvGMEDA operon in wild-type Escherichia coli K12. [My Copy] Molecular microbiology, Vol. 3, No. 8. (August 1989), pp. 1039-1051. by J. M. Lopes, N. Soliman, P. K. Smith, R. P. Lawther posted to salmonella polarity gene_expression e_coli bacteria by jjray on 2009-11-23 20:45:10 as
	Kinetics and regulation of transcription of bacteriophage Mu. [My Copy] Virology, Vol. 174, No. 1. (January 1990), pp. 192-203. by C. F. Marrs, M. M. Howe posted to transcription phage kinetics gene_regulation gene_expression bacteria by jjray on 2009-11-23 20:42:25 as
	Patterns of polarity in the Escherichia coli car AB gene cluster. [My Copy] Journal of bacteriology, Vol. 143, No. 2. (August 1980), pp. 914-920. by D. Gigot, M. Crabeel, A. Feller, et al.D. Charlier, W. Lissens, N. Glansdorff, A. Piérard posted to polarity phage gene_expression e_coli bacteria by jjray on 2009-11-23 20:40:38 as
	Mu-induced polarity in the unc operon of Escherichia coli. [My Copy] Journal of bacteriology, Vol. 134, No. 3. (June 1978), pp. 728-736. by F. Gibson, J. A. Downie, G. B. Cox, J. Radik posted to polarity phage gene_expression e_coli bacteria by jjray on 2009-11-23 20:40:24 as
	Genetic analysis of a temperature-sensitive Salmonella typhimurium rho mutant with an altered rho-associated polycytidylate-dependent adenosine triphosphatase activity. [My Copy] Journal of bacteriology, Vol. 147, No. 1. (July 1981), pp. 13-24. by P. R. Housley, A. D. Leavitt, H. J. Whitfield posted to salmonella polarity gene_expression bacteria by jjray on 2009-11-23 20:30:11 as
	Relief of transcriptional polarity by a mutation that creates a promoter in the hisG gene of Salmonella typhimurium LT2 [My Copy] Molecular and General Genetics MGG, Vol. 257, No. 5. (4 March 1998), pp. 529-533. by R. Bianco, G. Moramarco, A. Stella, M. S. Ciampi posted to salmonella polarity gene_expression bacteria by jjray on 2009-11-23 20:27:00 as
	Mu-induced polarity in the Escherichia coli K-12 ent gene cluster: evidence for a gene (entG) involved in the biosynthesis of enterochelin. [My Copy] J. Bacteriol., Vol. 124, No. 1. (1 October 1975), pp. 1-6. by G. C. Woodrow, I. G. Young, F. Gibson posted to polarity phage gene_expression e_coli bacteria by jjray on 2009-11-23 20:24:44 as
	Polarity effect on Φ80 late gene expression caused by insertion of su+3-transducing fragment [My Copy] Molecular and General Genetics MGG, Vol. 155, No. 2. (1 January 1977), pp. 139-143. by Akira Murakami, Hachiro Inokuchi, Haruo Ozeki, Hideo Yamagishi posted to polarity phage gene_expression e_coli bacteria by jjray on 2009-11-23 20:23:10 as
	Characterization of a new <i>rho</i> mutation that relieves polarity of Mu insertions [My Copy] Molecular Microbiology, Vol. 17, No. 2. (1995), pp. 231-240. by Joseph E. Peters, Spencer A. Benson posted to polarity phage gene_expression e_coli bacteria by jjray on 2009-11-23 20:18:07 as
	Minimal Gene Regulatory Circuits that Can Count like Bacteriophage Lambda [My Copy] Journal of Molecular Biology, Vol. 394, No. 4. (11 December 2009), pp. 681-693. by M. Avlund, Ian B. Dodd, K. Sneppen, S. Krishna posted to phage gene_network feedback bistability by jjray on 2009-11-23 17:32:41 as
	A High-Throughput Screen for Synthetic Riboswitches Reveals Mechanistic Insights into Their Function [My Copy] Chemistry & Biology, Vol. 14, No. 2. (February 2007), pp. 173-184. by Sean A. Lynch, Shawn K. Desai, Hari K. Sajja, Justin P. Gallivan posted to synthetic_biology screening riboswitches riboswitch design by Vincent_Rouilly on 2009-11-23 16:53:08 as
	Evolutionary dynamics from a variational principle [My Copy] (20 Nov 2009) by Peter Klimek, Stefan Thurner, Rudolf Hanel posted to theory evolutionary_dynamics evolution by jjray on 2009-11-23 16:34:37 as
	FACS-optimized mutants of the green fluorescent protein (GFP). [My Copy] Gene, Vol. 173, No. 1 Spec No. (1996), pp. 33-38. by B. P. Cormack, R. H. Valdivia, S. Falkow posted to synthetic_biology reporter_gene genetic_parts fluorescent_protein escherichia_coli by genocad on 2009-11-20 18:50:16 as along with 1 person davidng
	Is the amino acid but not the nucleotide sequence of the Escherichia coli araC gene conserved? [My Copy] Journal of molecular biology, Vol. 154, No. 4. (5 February 1982), pp. 649-652. by C. M. Stoner, R. Schleif posted to synthetic_biology genetic_parts escherichia_coli by genocad on 2009-11-20 18:33:32 as
	Nucleotide sequence of the luxR and luxI genes and structure of the primary regulatory region of the lux regulon of Vibrio fischeri ATCC 7744 [My Copy] Biochemistry, Vol. 27, No. 2. (1 January 1988), pp. 837-842. by Jerry H. Devine, Cari Countryman, Thomas O. Baldwin posted to synthetic_biology quorum_sensing genetic_parts by genocad on 2009-11-20 18:06:40 as
	Lambda Red-mediated recombinogenic engineering of enterohemorrhagic and enteropathogenic E. coli [My Copy] BMC Molecular Biology, Vol. 4, No. 1. (2003), 11. by Kenan Murphy, Kenneth Campellone posted to synthetic_biology genocad genetic_parts escherichia_coli by genocad on 2009-11-20 17:53:49 as
	Stable high-copy-number bacteriophage lambda promoter vectors for overproduction of proteins in Escherichia coli. [My Copy] Gene, Vol. 176, No. 1-2. (17 October 1996), pp. 49-53. by C. A. Love, P. E. Lilley, N. E. Dixon posted to synthetic_biology phage_lambda genetic_parts escherichia_coli by genocad on 2009-11-20 17:20:27 as
	An improved positive selection plasmid vector constructed by oligonucleotide mediated mutagenesis. [My Copy] Nucleic acids research, Vol. 11, No. 22. (25 November 1983), pp. 8019-8030. by B. Nilsson, M. Uhlén, S. Josephson, S. Gatenbeck, L. Philipson posted to synthetic_biology phage_lambda genetic_parts escherichia_coli by genocad on 2009-11-20 16:39:53 as
	Ubiquitous internal gene duplication and intron creation in eukaryotes [My Copy] Proceedings of the National Academy of Sciences of the United States of America In Proceedings of the National Academy of Sciences, Vol. 106, No. 49. (19 November 2009), pp. 20818-20823. by Xiang Gao, Michael Lynch posted to intron evolution eukaryote by jjray on 2009-11-20 16:11:42 as along with 3 people bpcusack maren dbensasson
	Control of mRNA processing and decay in prokaryotes [My Copy] Genetica, Vol. 94, No. 2. (1 June 1994), pp. 157-172. by Pietro Alifano, Carmelo B. Bruni, Maria S. Carlomagno posted to stability review mrna degradation bacteria by jjray on 2009-11-19 22:40:02 as
	RNA degradation in Escherichia coli regulated by 3' adenylation and 5' phosphorylation [My Copy] Nature, Vol. 374, No. 6518. (09 March 1995), pp. 180-183. by Fengfeng Xu, Stanley Cohen, N. posted to stability mrna e_coli degradation bacteria by jjray on 2009-11-19 22:03:07 as
	MESSENGER RNA STABILITY AND ITS ROLE IN CONTROL OF GENE EXPRESSION IN BACTERIA AND PHAGES [My Copy] Annual Review of Genetics, Vol. 33, No. 1. (1999), pp. 193-227. by Marianne G. Manago posted to stability review mrna gene_expression feedback degradation bacteria by jjray on 2009-11-19 21:46:47 as

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synthetic_biology	104
evolution	71
replication	55
single_strand	49
hairpin	47
cooperation	40
gene_expression	39
integrons	32
recombination	31
escherichia_coli	30
cruciform	30
phage	27
dna_coiling	25
bacteria	24
plasmid	22
noise	22
promoter	21
transcription	17
dna_folding	17
chromosome	14
conjugation	13
pria	12
networks	12
mutagenesis	11
protein	11
genetic_circuits	10
transposon	10
rolling-circle	10
antibiotics	9
vibrio	9
rna	8
hk022	8
systems_biology	8
lambda	7
dnaa	7
dna	6
metabolic_engineering	6
resistance	6
kin-selection	6
horizontal_gene_transfer	6
in_vivo	6
directed_evolution	5
primases	5
computational_biology	5
genome	5
tryptophan	5
genetic_code	5
relaxases	4
bgp	4
eucaryotes	4
regulation	4
subtilis	3
science	3
gene_shuffling	3
heat_shock	3
evolvability	3
toxinantitoxin	3
polyketide	3
review	3
plasticity	3
sos	3
dnag	3
oscillations	3
switch	3
dna_repair	3
methods	3
linker	3
integrase	3
epistemology	3
xna	3
protein_design	3
protein_structure	2
differentiation	2
flagella	2
pathogen	2
phylogeny	2
virus	2
persistence	2
lactose_operon	2
chemostat	2
feedback	2
synthetic_dna	2
physics	2
integron	2
cell_size	2
microfluidics	2
communication	2
biofuel	2
fusion_protein	2
transduction	2
cloning	2
population	2
microscopy	2
music	2
gene_networks	2
segregation	2
book	2
single_cell	2
light	1
stress	1
aa	1
serratia	1
shape	1
development	1
metagenome	1
replicators	1
energy	1
cassettes	1
operon	1
duplication	1
fun	1
cytoskeleton	1
protozoan	1
packaging	1
translation	1
permeases	1
a_thaliana	1
trna	1
lipids	1
brain_plasticity	1
mrna	1
computational_design	1
cholerae	1
robot	1
bacillus_subtilis	1
therapy	1
kinetics	1
group-selection	1
time_lapse	1
terpenoids	1
degradation	1
statistics	1
cell_cycle	1
algorithm	1
atpase	1
repair	1
osmotic_pressure	1
ribosome_binding_site	1
yeast	1
recombinant_protein	1
molecular_biology	1
mutation_rate	1
protein_domain	1
regulatory_circuits	1
electricity	1
electron_acceptors	1
cyanobacteria	1
annotation	1
telomeres	1
quorum-sensing	1
kin	1
excretion	1
intron	1
ssra	1
optimization	1
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logic	1
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cheater	1
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stochasticity	1
structure	1
hyperproduction	1
asymmetry	1
simplicity	1
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molecular	1
vesicle	1
amoeba	1
motor	1
polyploidy	1
design	1
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virulence	1
aging	1
microsatellite	1
model	1
fluorescence	1
ligand_binding	1
competition	1
quasispecies	1
volvox	1
old_paper	1
bet_hedging	1
chemotaxis	1
psc101	1
synthetic_gene	1
origins_of_life	1
sbccd	1
division	1
mutations	1
competence	1
single_molecule	1
species	1
humans	1
algae	1
memory	1
ppgpp	1
promoters	1
transformation	1
counterselection	1
dnab	1
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dbikard's watchlist [more than 800 articles] Export

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