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dchughes's bioinformatics [35 articles]

Recent papers added to dchughes's library classified by the tag bioinformatics. You can also see everyone's bioinformatics.
  • UCSC genome browser tutorial.
    Genomics (29 May 2008)
    by Ann S S Zweig, Donna Karolchik, Robert M M Kuhn, David Haussler, W James J Kent
    posted to bioinformatics genome by dchughes on 2008-07-15 14:52:20 as ** along with 5 people and 1 group cisevol jfr ajaymalik niallhaslam jyuh BergmanLab
  • Gene Ontology annotations: what they mean and where they come from.
    BMC bioinformatics, Vol. 9 Suppl 5 (2008)
    by DP Hill, B Smith, MS McAndrews-Hill, JA Blake
    posted to bioinformatics gene-ontology by dchughes on 2008-05-16 10:19:13 as ** along with 7 people and 1 group jyuh mariakmejia carlk lmichan grahamc dullhunk sabinaleo e-research en ciencias médicas y biológicas
  • Bioinformatics challenges of new sequencing technology
    Trends in Genetics, Vol. In Press, Corrected Proof
    by Mihai Pop, Steven L Salzberg
    posted to bioinformatics dna-sequencing sequencing by dchughes on 2008-02-28 11:20:00 as ** along with 14 people delenickphd giovenko jmeppley djkt GustavoLacerda niallhaslam urgi Neeperando jfr tharris mariakmejia caseybrown yoonk druvus
  • Targeted discovery of novel human exons by comparative genomics
    Genome Res. (7 November 2007), gr.7128207.
    by Adam Siepel, Mark Diekhans, Brona Brejova, Laura Langton, Michael Stevens, Charles L Comstock, Colleen Davis, Brent Ewing, Shelly Oommen, Christopher Lau, Hung-Chun Yu, Jianfeng Li, Bruce A Roe, Phil Green, Daniela S Gerhard, Gary Temple, David Haussler, Michael R Brent
    posted to bioinformatics comparative-analysis gene-prediction-validation human by dchughes on 2008-01-15 13:10:36 as ** along with 2 people stajich wenhan
  • Approaches for identifying targets of positive selection
    Trends in Genetics, Vol. 23, No. 11. (November 2007), pp. 568-577.
    by Jeffrey D Jensen, Alex Wong, Charles F Aquadro
    posted to bioinformatics positive-selection by dchughes on 2007-11-13 15:21:09 as ** along with 3 people and 2 groups stajich candypmcg dmc EisenLab Durbin group
  • miRNomics--The bioinformatic approach
    Biochemical and Biophysical Research Communications, Vol. In Press, Uncorrected Proof
    by Zhumur Ghosh, Jayprokas Chakrabarti, Bibekanand Mallick
    posted to bioinformatics mirna by dchughes on 2007-09-24 14:08:18 as ** along with 6 people and 3 groups skhadar andersbj heliopais delenca maralena natstreet microRNA G4ID Genetics-of-Gambling
  • Is your ?gene of interest? interesting?
    Developmental Dynamics, Vol. 236, No. 10. (2007), pp. 2962-2969.
    by Julie C Kiefer
    posted to bioinformatics by dchughes on 2007-09-19 09:50:34 as ** along with 2 people and 2 groups aviad_work jfr G4ID Genetics-of-Gambling
  • Reconstruction of the vertebrate ancestral genome reveals dynamic genome reorganization in early vertebrates.
    Genome Res (25 July 2007)
    by Yoichiro Nakatani, Hiroyuki Takeda, Yuji Kohara, Shinichi Morishita
    posted to bioinformatics comparative-analysis vertebrate by dchughes on 2007-09-05 11:58:11 as ** along with 2 people and 3 groups grahamc maximilianh G4ID ParkinsonLab_at_MaRS Genetics-of-Gambling
  • Proteomic applications of automated GPCR classification
    PROTEOMICS, Vol. 7, No. 16. (2007), pp. 2800-2814.
    by Matthew N Davies, David E Gloriam, Andrew Secker, Alex A Freitas, Miguel Mendao, Jon Timmis, Darren R Flower
    posted to bioinformatics gpcr proteomics by dchughes on 2007-08-17 12:34:16 as ** along with 2 groups G4ID Genetics-of-Gambling
  • How does eukaryotic gene prediction work?
    Nature Biotechnology, Vol. 25, No. 8., pp. 883-885.
    by Michael R Brent
    posted to bioinformatics by dchughes on 2007-08-16 17:29:17 as ** along with 7 people and 3 groups jyuh indigoviolet wenhan zwang cabbagezs nklee ale EisenLab G4ID Genetics-of-Gambling
  • Evolutionary History of Mammalian Transposons Determined by Genome-Wide Defragmentation.
    PLoS Comput Biol, Vol. 3, No. 7. (13 July 2007)
    by Joti Giordano, Yongchao Ge, Yevgeniy Gelfand, György Abrusán, Gary Benson, Peter E E Warburton
    posted to bioinformatics mammal transposition transposon by dchughes on 2007-07-28 09:51:31 as ** along with 7 people and 3 groups kiara aprasad sebastien_vigneau N0131826 paulcartwright yoanjacquemin PetrovLab G4ID Genetics-of-Gambling BergmanLab
  • Protein-Protein Interaction Hotspots Carved into Sequences.
    PLoS Comput Biol, Vol. 3, No. 7. (13 July 2007)
    by Yanay Ofran, Burkhard Rost
    posted to bioinformatics protein-protein-interaction by dchughes on 2007-07-28 09:49:38 as ** along with 7 people and 3 groups bicko grahamc cjeans zwang Jporci Pao-Yang higueruelo G4ID ParkinsonLab_at_MaRS Genetics-of-Gambling
  • Why Are There Still Over 1000 Uncharacterized Yeast Genes?
    Genetics, Vol. 176, No. 1. (1 May 2007), pp. 7-14.
    by Lourdes Pena-Castillo, Timothy R Hughes
    posted to bioinformatics biological-complexity genetics genome genome-annotation yeast-genomics by dchughes on 2007-05-21 10:14:01 as ** along with 3 people and 7 groups neveaire cjeans biomcgary Biostatistics Computational-Genomics Bioinformatics Neuroscience G4ID Genetics-of-Gambling Marcotte_Lab
  • The gene and the genon concept: a functional and information-theoretic analysis.
    Mol Syst Biol, Vol. 3 (2007)
    by K Scherrer, J Jost
    posted to bioinformatics genetics by dchughes on 2007-04-18 11:44:04 as ** along with 5 people and 3 groups cdawson neils zwang dylan77 bpcusack G4ID GIG Genetics-of-Gambling
  • Characterization and predictive discovery of evolutionarily conserved mammalian alternative promoters.
    Genome Res (8 January 2007)
    by Daehyun Baek, Colleen Davis, Brent Ewing, David Gordon, Phil Green
    posted to bioinformatics alternative-promoters by dchughes on 2007-02-02 11:04:41 as ** along with 1 person and 3 groups indigoviolet EisenLab G4ID Genetics-of-Gambling
  • Bioinformatics: Industrializing neuroscience
    Nature, Vol. 445, No. 7124. (10 January 2007), pp. 160-161.
    by Henry Markram
    posted to neuroscience expression-profiling bioinformatics by dchughes on 2007-01-11 14:19:08 as ** along with 2 groups G4ID Genetics-of-Gambling
  • Exploring genomic dark matter: A critical assessment of the performance of homology search methods on noncoding RNA.
    Genome Res (6 December 2006)
    by Eva K K Freyhult, Jonathan P P Bollback, Paul P P Gardner
    posted to bioinformatics by dchughes on 2007-01-04 10:19:24 as ** along with 9 people and 2 groups jfr eckart_bindewald ppgardne gpalidwor aswin bjhaugen jayster4 yoanjacquemin evaf G4ID Genetics-of-Gambling
  • Databases of free expression
    Mammalian Genome, Vol. 17, No. 12. (December 2006), pp. 1141-1146.
    by Walker, John, Wiltshire, Tim
    posted to bioinformatics expression-profiling by dchughes on 2007-01-02 14:45:14 as ** along with 1 person and 2 groups jfr G4ID Genetics-of-Gambling
  • The supermatrix approach to systematics
    Trends in Ecology & Evolution, Vol. 22, No. 1. (January 2007), pp. 34-41.
    by Alan de Queiroz, John Gatesy
    posted to bioinformatics molecular-phylogenetics by dchughes on 2006-12-24 11:28:01 as ** along with 2 groups G4ID Genetics-of-Gambling
  • A guide through present computational approaches for the identification of mammalian microRNA targets
    Nature Methods, Vol. 3, No. 11. (23 October 2006), pp. 881-886.
    by Praveen Sethupathy, Molly Megraw, Artemis G Hatzigeorgiou
    posted to bioinformatics mirna by dchughes on 2006-10-27 10:34:54 as ** along with 8 people and 4 groups tt jfr balajis tardigrade andersbj bootsy heliopais maralena Bioinformatics microRNA G4ID Genetics-of-Gambling
  • Clustering DNA sequences by feature vectors
    Molecular Phylogenetics and Evolution, Vol. 41, No. 1. (October 2006), pp. 64-69.
    by Libin Liu, Yee-Kin Ho, Stephen Yau
    posted to bioinformatics by dchughes on 2006-09-08 11:10:47 as ** along with 2 groups G4ID Genetics-of-Gambling
  • Guidelines: From artificial evolution to computational evolution: a research agenda
    Nature Reviews Genetics, Vol. 7, No. 9. (08 August 2006), pp. 729-735.
    by Wolfgang Banzhaf, Guillaume Beslon, Steffen Christensen, James A Foster, François Képès, Virginie Lefort, Julian F Miller, Miroslav Radman, Jeremy J Ramsden
    posted to bioinformatics computational-evolution evolution by dchughes on 2006-08-22 14:33:13 as ** along with 2 groups G4ID Genetics-of-Gambling
  • Form follows function: the architecture of complex networks
    Mol Syst Biol, Vol. 2 (2006)
    by Roger Guimera, Marta Sales-Pardo
    posted to bioinformatics systems-biology by dchughes on 2006-08-22 13:21:12 as ** along with 1 person and 2 groups cmmorel G4ID Genetics-of-Gambling
  • Using phylogenetic analyses and reference datasets to validate the species identities of cetacean sequences in GenBank
    Molecular Phylogenetics and Evolution, Vol. 40, No. 3. (September 2006), pp. 866-871.
    by Howard A Ross, Sumathi Murugan
    posted to bioinformatics molecular-phylogenetics by dchughes on 2006-08-09 11:25:27 as ** along with 2 groups G4ID Genetics-of-Gambling
  • Predicting candidate genes for human deafness disorders: a bioinformatics approach
    BMC Genomics, Vol. 7 (19 July 2006), 180.
    by Rami Alsaber, Christopher J Tabone, Raj P Kandpal
    posted to bioinformatics deafness by dchughes on 2006-07-24 13:43:15 as ** along with 1 person and 2 groups shirleym G4ID Genetics-of-Gambling
  • A sequence-oriented comparison of gene expression measurements across different hybridization-based technologies
    Nature Biotechnology, Vol. 24, No. 7. (02 July 2006), pp. 832-840.
    by Winston P Kuo, Fang Liu, Jeff Trimarchi, Claudio Punzo, Michael Lombardi, Jasjit Sarang, Mark E Whipple, Malini Maysuria, Kyle Serikawa, Sun Y Lee, Donald Mccrann, Jason Kang, Jeffrey R Shearstone, Jocelyn Burke, Daniel J Park, Xiaowei Wang, Trent L Rector, Paola Ricciardi-Castagnoli, Steven Perrin, Sangdun Choi, Roger Bumgarner, Ju H Kim, Glenn F Short, Mason W Freeman, Brian Seed, Roderick Jensen, George M Church, Eivind Hovig, Connie L Cepko, Peter Park, Lucila Ohno-Machado, Tor-Kristian Jenssen
    posted to bioinformatics by dchughes on 2006-07-14 11:58:01 as ** along with 2 people and 2 groups jfr stsaft G4ID Genetics-of-Gambling
  • Dcode.org anthology of comparative genomic tools.
    Nucleic Acids Res, Vol. 33, No. Web Server issue. (1 July 2005)
    by GG Loots, I Ovcharenko
    posted to bioinformatics by dchughes on 2006-06-23 16:51:38 as ** along with 1 person and 2 groups aprasad G4ID Genetics-of-Gambling
  • Computational prediction of eukaryotic protein-coding genes.
    Nat Rev Genet, Vol. 3, No. 9. (September 2002), pp. 698-709.
    by MQ Zhang
    posted to bioinformatics by dchughes on 2006-06-05 17:30:32 as ** along with 3 people and 3 groups indigoviolet GustavoLacerda wenhan EisenLab G4ID Genetics-of-Gambling
  • Applied bioinformatics for the identification of regulatory elements.
    Nat Rev Genet, Vol. 5, No. 4. (April 2004), pp. 276-287.
    by WW Wasserman, A Sandelin
    posted to bioinformatics by dchughes on 2006-06-05 17:25:50 as ** along with 16 people and 8 groups icases ana chad_davis moborg gpalidwor nickluscombe johncumbers giovanni xiaobeizhao bertelsen Stew nklee jdiezperezj ArtemPankin mariakmejia isimpson structural_bioinformatics Bioinformatics EisenLab G4ID EBI-regulation GeschwindLab TNT Genetics-of-Gambling
  • Mulan: multiple-sequence local alignment and visualization for studying function and evolution.
    Genome Res, Vol. 15, No. 1. (January 2005), pp. 184-194.
    by I Ovcharenko, GG Loots, BM Giardine, M Hou, J Ma, RC Hardison, L Stubbs, W Miller
    posted to bioinformatics mulan by dchughes on 2006-05-28 11:26:02 as ** along with 3 people and 2 groups jwortman eckart_bindewald Neeperando G4ID Genetics-of-Gambling
  • Gene prioritization through genomic data fusion
    Nature Biotechnology, Vol. 24, No. 5. (05 May 2006), pp. 537-544.
    by Stein Aerts, Diether Lambrechts, Sunit Maity, Peter Van Loo, Bert Coessens, Frederik De Smet, Leon-Charles Tranchevent, Bart De Moor, Peter Marynen, Bassem Hassan, Peter Carmeliet, Yves Moreau
    posted to bioinformatics by dchughes on 2006-05-08 11:04:09 as ** along with 6 people and 2 groups jfr balajis frohike winterschlaefer barriot srp33 G4ID Genetics-of-Gambling
  • Alternative alignments from comparison of protein structures
    Proteins: Structure, Function, and Bioinformatics, Vol. 56, No. 3. (2 April 2004), pp. 519-527.
    by Edward S Shih, Ming-Jing Hwang
    posted to bioinformatics by dchughes on 2006-03-29 10:06:41 as ** along with 4 people and 4 groups ana barry Einat eweaver structural_bioinformatics Bioinformatics G4ID Genetics-of-Gambling
  • Evidence that miRNAs are different from other RNAs.
    Cell Mol Life Sci, Vol. 63, No. 2. (January 2006), pp. 246-254.
    by BH Zhang, XP Pan, SB Cox, GP Cobb, TA Anderson
    posted to bioinformatics mirna by dchughes on 2006-03-22 13:22:30 as ** along with 4 people and 6 groups marcius eckart_bindewald andersbj cdawson microRNA G4ID BioinfoCIPF SGU-CIPF GIG Genetics-of-Gambling
  • MicroRNA identification based on sequence and structure alignment
    Bioinformatics, Vol. 21, No. 18. (15 September 2005), pp. 3610-3614.
    by Xiaowo Wang, Jing Zhang, Jin Gu, Tao He, Xuegong Zhang, Yanda Li
    posted to bioinformatics mirna by dchughes on 2006-03-16 13:32:26 as ** along with 3 people and 2 groups balajis NamJinWu bootsy G4ID Genetics-of-Gambling
  • Characterization and prediction of alternative splice sites
    Gene, Vol. 366, No. 2. (1 February 2006), pp. 219-227.
    by Magnus Wang, Antonio Marin
    posted to alternative-splicing bioinformatics by dchughes on 2006-02-15 12:47:13 as ** along with 1 person and 2 groups GustavoLacerda G4ID Genetics-of-Gambling
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