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	structure [My Copy] posted to study by dfdong on 2009-11-26 09:02:33 as
	alns [My Copy] posted to study by dfdong on 2009-11-26 08:58:53 as
	High-confidence prediction of global interactomes based on genome-wide coevolutionary networks. [My Copy] Proceedings of the National Academy of Sciences of the United States of America, Vol. 105, No. 3. (22 January 2008), pp. 934-939. by David Juan, Florencio Pazos, Alfonso Valencia posted to coevolution by dfdong on 2009-11-26 08:48:14 as along with 18 people and 1 group ptrobajo biomcgary qluo winterschlaefer marti tmmurali brant balicea sebastien_vigneau bluto cjeans aconesa Katje roys friendpine huali mdstobbe paolomarcatili microbiology_nijmegen
	Conserved structural determinants in three-fingered protein domains [My Copy] FEBS Journal, Vol. 275, No. 12. (June 2008), pp. 3207-3225. by Andrzej Galat, Gregory Gross, Pascal Drevet, Atsushi Sato, André Ménez posted to structure_evolution by dfdong on 2009-11-25 09:27:57 as
	Is protein classification necessary? Toward alternative approaches to function annotation [My Copy] Current Opinion in Structural Biology, Vol. 19, No. 3. (5 June 2009), pp. 363-368. by Donald Petrey, Barry Honig posted to structure_evolution by dfdong on 2009-11-25 09:27:50 as along with 8 people and 4 groups sconlan robfsouza davidalee sobolevnrm janasont idoerg fgibson barry Orengo Group Journal Picks baker-group structural_bioinformatics Bioinformatics
	Fold space unlimited [My Copy] Current Opinion in Structural Biology, Vol. 19, No. 3. (08 June 2009), pp. 312-320. by Manfred J. Sippl posted to structure_evolution by dfdong on 2009-11-25 09:27:44 as along with 3 people and 1 group pansapiens skywalkerus02 davidalee Orengo Group Journal Picks
	Exploiting structural classifications for function prediction: towards a domain grammar for protein function [My Copy] Current Opinion in Structural Biology, Vol. 19, No. 3. (22 June 2009), pp. 349-356. by Benoît H. Dessailly, Oliver C. Redfern, Alison Cuff, Christine A. Orengo posted to structure_evolution by dfdong on 2009-11-25 09:27:27 as along with 2 people and 1 group bdessailly paulschlesinger Orengo Group Journal Picks
	Function Diversity Within Folds and Superfamilies [My Copy] From Protein Structure to Function with Bioinformatics (2009), pp. 143-166. by Benoit H. Dessailly, Christine A. Orengo posted to structure_evolution by dfdong on 2009-11-25 09:26:41 as
	Evolutionary transitions in protein fold space [My Copy] Current Opinion in Structural Biology In Nucleic acids / Sequences and topology, Vol. 17, No. 3. (June 2007), pp. 354-361. by W. Taylor posted to structure_evolution by dfdong on 2009-11-25 09:26:33 as along with 4 people cat_worth cactus Jporci cdeane
	The helixâturnâhelix motif as an ultrafast independently folding domain: The pathway of folding of Engrailed homeodomain [My Copy] Proceedings of the National Academy of Sciences, Vol. 104, No. 22. (29 May 2007), pp. 9272-9277. by Tomasz L. Religa, Christopher M. Johnson, Dung M. Vu, Scott H. Brewer, R. Brian Dyer, Alan R. Fersht posted to structure_evolution by dfdong on 2009-11-25 09:26:24 as
	Exploring the structure and function paradigm [My Copy] Current Opinion in Structural Biology In Nucleic acids / Sequences and topology, Vol. 18, No. 3. (June 2008), pp. 394-402. by O. Redfern, B. Dessailly, C. Orengo posted to structure_evolution by dfdong on 2009-11-25 09:25:13 as along with 8 people and 1 group yylin bdessailly robfsouza guhjy paulschlesinger marck chad_davis janasont Orengo Group Journal Picks
	Detecting evolutionary relationships across existing fold space, using sequence order-independent profileâprofile alignments [My Copy] Proceedings of the National Academy of Sciences, Vol. 105, No. 14. (8 April 2008), pp. 5441-5446. by Lei Xie, Philip E. Bourne posted to structure_evolution by dfdong on 2009-11-25 09:24:36 as along with 3 people and 1 group vpenelle zwang sobolevnrm baker-group
	How far divergent evolution goes in proteins [My Copy] Current Opinion in Structural Biology, Vol. 8, No. 3. (June 1998), pp. 380-387. by A. Murzin posted to structure_evolution by dfdong on 2009-11-25 09:24:01 as
	Bio3d: an R package for the comparative analysis of protein structures. [My Copy] Bioinformatics (29 August 2006) by Barry J J. Grant, Ana P C P. Rodrigues, Karim M M. Elsawy, J Andrew A. McCammon, Leo S D S. Caves posted to tool by dfdong on 2009-11-25 07:44:06 as along with 9 people and 2 groups dswan gisle ana barry Einat plofje krishnaJCSG insectopalo cdeane structural_bioinformatics Bioinformatics
	Graph theoretic methods for the analysis of structural relationships in biological macromolecules [My Copy] Journal of the American Society for Information Science and Technology, Vol. 56, No. 5. (19 January 2005), pp. 518-528. by Peter J. Artymiuk, Ruth V. Spriggs, Peter Willett posted to tool by dfdong on 2009-11-25 07:42:20 as along with 2 people and 3 groups ana JeremyZucker structural_bioinformatics Bioinformatics MetabolicModeling
	LGA: A method for finding 3D similarities in protein structures. [My Copy] Nucleic Acids Res, Vol. 31, No. 13. (1 July 2003), pp. 3370-3374. by A. Zemla posted to tool structure_evolution by dfdong on 2009-11-25 07:40:28 as along with 4 people and 2 groups karbak ana vavi analogAI structural_bioinformatics Bioinformatics
	Structural genomics: computational methods for structure analysis. [My Copy] Protein Sci, Vol. 12, No. 9. (September 2003), pp. 1813-1821. by S. Goldsmith-Fischman, B. Honig posted to structure_evolution second_evolution review by dfdong on 2009-11-25 07:38:52 as along with 4 people and 2 groups ana tjimenez vavi mijogiffin structural_bioinformatics Bioinformatics
	Simulating protein evolution in sequence and structure space. [My Copy] Curr Opin Struct Biol, Vol. 14, No. 2. (April 2004), pp. 202-207. by Y. Xia, M. Levitt posted to structure_evolution second_evolution by dfdong on 2009-11-25 07:37:42 as along with 14 people and 4 groups idoerg yuslinaz saunders betainverse korakot mdimmic karbak rmj001 ana barry aalibes gbart analogAI insectopalo Philosophy_of_Information Blog_and_Wiki_Research structural_bioinformatics Bioinformatics
	Imprint of evolution on protein structures. [My Copy] Proc Natl Acad Sci U S A, Vol. 101, No. 9. (2 March 2004), pp. 2846-2851. by G. Tiana, B. E. Shakhnovich, N. V. Dokholyan, E. I. Shakhnovich posted to structure_evolution second_evolution by dfdong on 2009-11-25 07:36:39 as along with 3 people and 2 groups ana barry pansapiens structural_bioinformatics Bioinformatics
	Sequence variations within protein families are linearly related to structural variations. [My Copy] J Mol Biol, Vol. 323, No. 3. (25 October 2002), pp. 551-562. by P. Koehl, M. Levitt posted to structure_evolution second_evolution by dfdong on 2009-11-25 07:35:03 as along with 4 people and 2 groups ana barry okarsligil insectopalo structural_bioinformatics Bioinformatics
	The relation between the divergence of sequence and structure in proteins. [My Copy] The EMBO journal, Vol. 5, No. 4. (April 1986), pp. 823-826. by C. Chothia, A. M. Lesk posted to structure_evolution second_evolution by dfdong on 2009-11-25 07:34:09 as along with 14 people and 6 groups martainn ucbcjbm bertelsen semin sgoetz cen4ik ana pansapiens jwm Einat marcius xdeupi ffranca insectopalo structural_bioinformatics Radiation_Damage Stressosome Bioinformatics BioinfoCIPF SGU-CIPF
	Evolution of protein structures and functions. [My Copy] Curr Opin Struct Biol, Vol. 12, No. 3. (June 2002), pp. 400-408. by L. N. Kinch, N. V. Grishin posted to structure_evolution second_evolution by dfdong on 2009-11-25 07:32:37 as along with 6 people and 7 groups korakot karbak matzke ana barry joergkurtwegner Philosophy_of_Information Blog_and_Wiki_Research structural_bioinformatics Bioinformatics Molecular-Modelling Drug-Design Cheminformatics
	The evolutionary capacity of protein structures [My Copy] In RECOMB '04: Proceedings of the eighth annual international conference on Computational molecular biology (2004), pp. 290-297. by Leonid Meyerguz, David Kempe, Jon Kleinberg, Ron Elber posted to structure_evolution second_evolution by dfdong on 2009-11-25 07:20:59 as along with 2 people and 2 groups apaydin ana structural_bioinformatics Bioinformatics
	Evolution of protein structures and functions [My Copy] Current Opinion in Structural Biology, Vol. 12, No. 3. (01 June 2002), pp. 400-408. by Lisa N. Kinch, Nick V. Grishin posted to structure_evolution second_evolution by dfdong on 2009-11-25 07:20:33 as along with 2 people and 2 groups ana barry structural_bioinformatics Bioinformatics
	In search of the limits of evolution [My Copy] Nature Genetics, Vol. 37, No. 1. (January 2005), pp. 9-10. by Fyodor A. Kondrashov posted to evolution by dfdong on 2009-11-25 07:19:35 as along with 2 people and 2 groups LeightonP ana structural_bioinformatics Bioinformatics
	Protein families and their evolution-a structural perspective. [My Copy] Annu Rev Biochem, Vol. 74 (2005), pp. 867-900. by C. A. Orengo, J. M. Thornton posted to structure_evolution second_evolution by dfdong on 2009-11-25 07:19:07 as along with 19 people and 6 groups ucbcjbm flbarroso kumar_physics yuslinaz ssgong ana barry tjimenez jwm chad_davis Einat Schmidtc marcius sriram_s ezotenko redelings medic0747 nigham sim82 structural_bioinformatics Radiation_Damage Stressosome Bioinformatics BioinfoCIPF SGU-CIPF
	Evolutionary information for specifying a protein fold [My Copy] Nature, Vol. 437, No. 7058., pp. 512-518. by Michael Socolich, Steve W. Lockless, William P. Russ, Heather Lee, Kevin H. Gardner, Rama Ranganathan posted to structure_evolution second_evolution by dfdong on 2009-11-25 07:17:34 as along with 16 people and 5 groups ucbcjbm ana barry lna bpb Einat balajis marcius gbart analogAI nirfriedman caporaso massivemayhem mingzhi bethbromley ca3295 structural_bioinformatics Bioinformatics biomedical-nlp BioinfoCIPF SGU-CIPF
	Structural Features can be Unconserved in Proteins with Similar Folds : An Analysis of Side-chain to Side-chain Contacts Secondary Structure and Accessibility [My Copy] Journal of Molecular Biology, Vol. 244, No. 3. (1 December 1994), pp. 332-350. by Robert B. Russell, Geoffrey J. Barton posted to structure_evolution second_evolution by dfdong on 2009-11-25 07:16:49 as along with 2 people and 2 groups ana rabio structural_bioinformatics Bioinformatics
	Scoring residue conservation. [My Copy] Proteins, Vol. 48, No. 2. (1 August 2002), pp. 227-241. by W. S. Valdar posted to conservation by dfdong on 2009-11-25 07:14:11 as along with 7 people and 2 groups barry pansapiens bicko sriram_s cjeans sobolevnrm marti structural_bioinformatics Bioinformatics
	The CATH Domain Structure Database and related resources Gene3D and DHS provide comprehensive domain family information for genome analysis. [My Copy] Nucleic acids research. , Vol. 33, No. Database issue. (1 January 2005) by F. Pearl, A. Todd, I. Sillitoe, et al.M. Dibley, O. Redfern, T. Lewis, C. Bennett, R. Marsden, A. Grant, D. Lee, A. Akpor, M. Maibaum, A. Harrison, T. Dallman, G. Reeves, I. Diboun, S. Addou, S. Lise, C. Johnston, A. Sillero, J. Thornton, C. Orengo posted to database by dfdong on 2009-11-25 07:11:50 as along with 5 people and 3 groups sillitoe barry tjimenez chrn alexg Orengo Group Journal Picks structural_bioinformatics Bioinformatics
	Evolution of protein fold in the presence of functional constraints [My Copy] Current Opinion in Structural Biology In Nucleic acids/Sequences and topology - Anna Marie Pyle and Jonathan Widom/Nick V Grishin and Sarah A Teichmann, Vol. 16, No. 3. (June 2006), pp. 399-408. by Antonina Andreeva, Alexey G. Murzin posted to structure_evolution second_evolution by dfdong on 2009-11-25 07:06:44 as along with 5 people and 2 groups ana barry Einat tny cjeans structural_bioinformatics Bioinformatics
	Conformational diversity and protein evolution--a 60-year-old hypothesis revisited. [My Copy] Trends Biochem Sci, Vol. 28, No. 7. (July 2003), pp. 361-368. by L. C. James, D. S. Tawfik posted to structure_evolution second_evolution by dfdong on 2009-11-25 07:05:09 as along with 2 people and 2 groups ana barry structural_bioinformatics Bioinformatics
	The structure of protein evolution and the evolution of protein structure [My Copy] Current Opinion in Structural Biology, Vol. In Press, Corrected Proof by Richard A. Goldstein posted to structure_evolution second_evolution by dfdong on 2009-11-25 07:04:48 as along with 5 people and 3 groups yuslinaz barry bpb zwang cmzmasek structural_bioinformatics McCammon Bioinformatics
	Stabilization centers in proteins: identification, characterization and predictions. [My Copy] J Mol Biol, Vol. 272, No. 4. (3 October 1997), pp. 597-612. by Z. Dosztányi, A. Fiser, I. Simon posted to structure_evolution stabilization_center second_evolution by dfdong on 2009-11-25 07:04:03 as along with 2 people and 1 group Einat analogAI structural_bioinformatics
	The hydrophobic-staple motif and a role for loop-residues in [alpha]-helix stability and protein folding [My Copy] Nat Struct Mol Biol, Vol. 2, No. 5. (May 1995), pp. 380-385. by Victor Munoz, Francisco J. Blanco, Luis Serrano posted to structure_evolution second_evolution by dfdong on 2009-11-25 07:02:27 as along with 1 person and 1 group Einat structural_bioinformatics
	Consistency analysis of similarity between multiple alignments: prediction of protein function and fold structure from analysis of local sequence motifs. [My Copy] J Mol Biol, Vol. 307, No. 3. (30 March 2001), pp. 939-949. by V. Kunin, B. Chan, E. Sitbon, G. Lithwick, S. Pietrokovski posted to structure_evolution second_evolution by dfdong on 2009-11-25 07:01:54 as along with 2 people and 1 group bobychan Einat structural_bioinformatics
	Universally conserved positions in protein folds: reading evolutionary signals about stability, folding kinetics and function. [My Copy] J Mol Biol, Vol. 291, No. 1. (6 August 1999), pp. 177-196. by L. A. Mirny, E. I. Shakhnovich posted to structure_evolution second_evolution by dfdong on 2009-11-25 07:00:05 as along with 4 people and 4 groups ana barry Einat marcius structural_bioinformatics Bioinformatics BioinfoCIPF SGU-CIPF
	Contributions of residue pairing to [beta]-sheet formation:conservation and covariation of amino acid residue pairs on antiparallel [beta]-strands [My Copy] Journal of Molecular Biology, Vol. 305, No. 5. (2 February 2001), pp. 1145-1159. by Yael Mandel-Gutfreund, Sydney M. Zaremba, Lydia M. Gregoret posted to structure_evolution second_evolution coevoluion_interface by dfdong on 2009-11-25 06:59:05 as along with 1 person and 1 group Einat structural_bioinformatics
	Symmetric Connectivity of Secondary Structure Elements Enhances the Diversity of Folding Pathways. [My Copy] J Mol Biol (29 September 2005) by Dmitri K K. Klimov, D Thirumalai posted to structure_evolution second_evolution by dfdong on 2009-11-25 06:58:08 as along with 1 person and 1 group Einat structural_bioinformatics
	Strand-loop-strand motifs: prediction of hairpins and diverging turns in proteins. [My Copy] Proteins, Vol. 54, No. 2. (1 February 2004), pp. 282-288. by M. Kuhn, J. Meiler, D. Baker posted to structure_evolution second_evolution by dfdong on 2009-11-25 06:56:43 as along with 1 person and 1 group Einat structural_bioinformatics
	Typical interaction patterns in alphabeta and betaalpha turn motifs. [My Copy] Protein Eng, Vol. 11, No. 7. (July 1998), pp. 505-522. by R. Wintjens, S. J. Wodak, M. Rooman posted to structure_evolution second_evolution by dfdong on 2009-11-25 06:53:04 as along with 1 person and 1 group Einat structural_bioinformatics
	Patterns and conformations of commonly occurring supersecondary structures (basic motifs) in protein data bank. [My Copy] J Protein Chem, Vol. 15, No. 7. (October 1996), pp. 675-690. by Z. Sun, B. Jiang posted to structure_evolution second_evolution by dfdong on 2009-11-25 06:46:16 as along with 1 person and 1 group Einat structural_bioinformatics
	Protein secondary structure: entropy, correlations and prediction. [My Copy] Bioinformatics, Vol. 20, No. 10. (10 July 2004), pp. 1603-1611. by G. E. Crooks, S. E. Brenner posted to structure_evolution second_evolution by dfdong on 2009-11-25 06:44:49 as along with 3 people and 1 group zambujo Einat analogAI structural_bioinformatics
	Comparison of super-secondary structures in proteins. [My Copy] J Mol Biol, Vol. 76, No. 2. (15 May 1973), pp. 241-256. by S. T. Rao, M. G. Rossmann posted to structure_evolution second_evolution by dfdong on 2009-11-25 06:43:05 as along with 3 people and 2 groups reyez barry Einat structural_bioinformatics Bioinformatics
	Dictionary of protein secondary structure: Pattern recognition of hydrogen-bonded and geometrical features [My Copy] Biopolymers, Vol. 22, No. 12. (December 1983), pp. 2577-2637. by Wolfgang Kabsch, Christian Sander posted to structure_evolution second_evolution by dfdong on 2009-11-25 06:37:54 as along with 33 people barmak7282 Vadikus j3xucite scampos TLVincent maria_hauser pablocarb rpetrenko carlosjavierna mijam wqia007 dsmueller niallhaslam saunders jwm sebk Diego_Prada pjcite kaarsinogen lna chad_davis wouterboomsma penka ffranca dgront choonpeng rabio gisle medic0747 martainn chgjb mschofie marti
	Structural Evidence for Evolution of the beta /alpha Barrel Scaffold by Gene Duplication and Fusion [My Copy] Science, Vol. 289, No. 5484. (1 September 2000), pp. 1546-1550. by Dietmar Lang, Ralf Thoma, Martina Henn-Sax, Reinhard Sterner, Matthias Wilmanns posted to structure_evolution second_evolution by dfdong on 2009-11-25 06:37:08 as along with 2 people pablocarb echinotrix
	Homology among (betaalpha)(8) barrels: implications for the evolution of metabolic pathways. [My Copy] J Mol Biol, Vol. 303, No. 4. (3 November 2000), pp. 627-641. by R. R. Copley, P. Bork posted to structure_evolution second_evolution by dfdong on 2009-11-25 06:36:39 as along with 3 people and 1 group pablocarb tjimenez Einat structural_bioinformatics
	Two-fold repeated (betaalpha)4 half-barrels may provide a molecular tool for dual substrate specificity. [My Copy] EMBO reports, Vol. 6, No. 2. (14 February 2005), pp. 134-139. by Jochen Kuper, Catharina Doenges, Matthias Wilmanns posted to structure_evolution second_evolution by dfdong on 2009-11-25 06:36:25 as along with 1 person pablocarb
	Catalytic Versatility, Stability, and Evolution of the (βα)8-Barrel Enzyme Fold [My Copy] Chemical Reviews, Vol. 105, No. 11. (1 November 2005), pp. 4038-4055. by Reinhard Sterner, Birte Hocker posted to structure_evolution second_evolution by dfdong on 2009-11-25 06:36:06 as along with 1 person pablocarb
	Protein Dynamism and Evolvability [My Copy] Science, Vol. 324, No. 5924. (10 April 2009), pp. 203-207. by Nobuhiko Tokuriki, Dan S. Tawfik posted to structure_evolution by dfdong on 2009-11-25 03:02:38 as along with 20 people and 3 groups tomhebbron anuragsethi ahmetbakan kevinchannon klexa lauresultan dbikard ibuch ramiro2k barry pablocarb ramanuja sobolevnrm biomcgary hsekiguc VGreiff phoenixzxl zwang jdoconnell paulschlesinger structural_bioinformatics McCammon baker-group

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structure_evolution	44
second_evolution	34
coevolution	24
docking	20
predict	18
complex	12
polymerase	9
folding	7
review	7
window	7
tree_path	6
analysis	5
drosophilar	5
genome_wide	5
ppi	5
coevoluion_interface	4
contact	4
evolution	4
immune	4
screen	4
tool	4
aagrouping	3
folding_evolution	3
sequence_weighting	3
window_contact	3
check	2
function_site	2
hmm	2
ml	2
patch	2
segment	2
study	2
xray	2
aacontact	1
ancestor	1
conservation	1
database	1
ddi	1
decoy	1
disorder	1
motif	1
phylip	1
seq_interface	1
stabilization_center	1

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