dfdong's predict [19 articles] Export

Recent papers added to dfdong's library classified by the tag predict. You can also see everyone's predict.

	Statistical analysis and prediction of protein-protein interfaces [My Copy] Proteins: Structure, Function, and Bioinformatics, Vol. 60, No. 3. (19 May 2005), pp. 353-366. by Andrew J. Bordner, Ruben Abagyan posted to predict patch docking complex by dfdong on 2009-11-28 02:24:30 as along with 8 people and 2 groups boris_aguilar barry bicko lyongu ameetsoni cjeans Evangelia marti structural_bioinformatics Bioinformatics
	Protein binding site prediction using an empirical scoring function [My Copy] Nucl. Acids Res., Vol. 34, No. 13. (7 August 2006), pp. 3698-3707. by Shide Liang, Chi Zhang, Song Liu, Yaoqi Zhou posted to seq_interface predict docking by dfdong on 2009-11-23 08:33:29 as along with 4 people iaolier bicko emidio_capriotti marti
	Protein structure prediction via combinatorial assembly of sub-structural units [My Copy] Bioinformatics, Vol. 19, No. suppl_1. (3 July 2003), pp. i158-168. by Yuval Inbar, Hadar Benyamini, Ruth Nussinov, Haim J. Wolfson posted to segment predict folding by dfdong on 2009-11-11 09:05:22 as along with 1 person chad_davis
	Finding of residues crucial for supersecondary structure formation [My Copy] Proceedings of the National Academy of Sciences, Vol. 106, No. 45. (10 November 2009), pp. 18996-19000. by Alexander E. Kister, Israel Gelfand posted to predict folding by dfdong on 2009-11-11 07:10:57 as along with 1 person zwang
	An evolutionarily conserved network of amino acids mediates gating in voltage-dependent potassium channels. [My Copy] Journal of molecular biology, Vol. 340, No. 2. (2 July 2004), pp. 307-318. by Sarel J. Fleishman, Ofer Yifrach, Nir Ben-Tal posted to tree_path predict coevolution by dfdong on 2009-11-04 08:10:19 as along with 3 people qluo cjeans mingzhi
	A survey of available tools and web servers for analysis of protein-protein interactions and interfaces [My Copy] Brief Bioinform, Vol. 10, No. 3. (1 May 2009), pp. 217-232. by Nurcan Tuncbag, Gozde Kar, Ozlem Keskin, Attila Gursoy, Ruth Nussinov posted to review predict ppi complex analysis by dfdong on 2009-11-04 03:28:16 as along with 12 people and 3 groups jinghu_fandm daforerog qluo SaraNasser mikaellund reyez diamantis apaydin barry semin renatomilani svozil structural_bioinformatics McCammon Bioinformatics
	Predicting domain-domain interactions using a parsimony approach [My Copy] Genome Biology, Vol. 7, No. 11. (09 November 2006), R104. by Katia Guimaraes, Raja Jothi, Elena Zotenko, Teresa Przytycka posted to predict ddi by dfdong on 2009-11-04 03:27:18 as along with 6 people qluo marti cerca phoenixzxl carlk saket
	Detecting coevolution without phylogenetic trees? Tree-ignorant metrics of coevolution perform as well as tree-aware metrics [My Copy] BMC Evolutionary Biology, Vol. 8, No. 1. (03 December 2008), 327. by J. Gregory Caporaso, Sandra Smit, Brett Easton, Lawrence Hunter, Gavin Huttley, Rob Knight posted to sequence_weighting predict coevolution by dfdong on 2009-11-04 03:26:15 as along with 4 people and 1 group mgomes qluo sjcockell djkt iSEEM
	Detecting compensatory covariation signals in protein evolution using reconstructed ancestral sequences. [My Copy] Journal of molecular biology, Vol. 319, No. 3. (7 June 2002), pp. 729-743. by K. Fukami-Kobayashi, D. R. Schreiber, S. A. Benner posted to tree_path predict coevolution by dfdong on 2009-11-04 03:25:40 as along with 3 people chica qluo ramensky
	In silico two-hybrid system for the selection of physically interacting protein pairs [My Copy] Proteins: Structure, Function, and Genetics, Vol. 47, No. 2. (2002), pp. 219-227. by Florencio Pazos, Alfonso Valencia posted to predict ppi coevolution by dfdong on 2009-11-04 03:24:54 as along with 3 people qluo Robinder tale
	ISIS: interaction sites identified from sequence. [My Copy] Bioinformatics (Oxford, England), Vol. 23, No. 2. (15 January 2007), pp. e13-16. by Yanay Ofran, Burkhard Rost posted to predict docking coevolution by dfdong on 2009-11-04 03:23:25 as along with 2 people bicko qluo
	Prediction of interface residues in protein-protein complexes by a consensus neural network method: test against NMR data. [My Copy] Proteins. , Vol. 61, No. 1. (1 October 2005), pp. 21-35. by H. Chen, H. X. Zhou posted to predict ml docking complex coevolution by dfdong on 2009-11-04 03:23:02 as along with 2 people qluo karbak
	Prediction of Protein-Protein Interface Residues Using Sequence Neighborhood and Surface Properties [My Copy] Advances in Neural Networks - ISNN 2006 (2006), pp. 660-666. by Yasir Arafat, Joarder Kamruzzaman, Gour Karmakar posted to window predict complex coevolution by dfdong on 2009-11-04 03:22:03 as along with 1 person qluo
	Improved residue contact prediction using support vector machines and a large feature set. [My Copy] BMC bioinformatics, Vol. 8 (02 April 2007), 113. by Jianlin Cheng, Pierre Baldi posted to predict ml contact by dfdong on 2009-11-04 02:40:56 as along with 3 people iaolier pjcite ndiaz
	Using inferred residue contacts to distinguish between correct and incorrect protein models. [My Copy] Bioinformatics (Oxford, England), Vol. 24, No. 14. (15 July 2008), pp. 1575-1582. by Christopher S. Miller, David Eisenberg posted to predict decoy contact by dfdong on 2009-11-04 02:11:04 as along with 1 group MuraLab
	Insights into Protein–Protein Interfaces using a Bayesian Network Prediction Method [My Copy] Journal of Molecular Biology, Vol. 362, No. 2. (15 September 2006), pp. 365-386. by James R. Bradford, Chris J. Needham, Andrew J. Bulpitt, David R. Westhead posted to predict docking complex by dfdong on 2009-11-03 15:05:10 as along with 8 people and 2 groups barry conkymacro ameetsoni grahamc massivemayhem phoenixzxl marti paolomarcatili structural_bioinformatics Bioinformatics
	Interaction-site prediction for protein complexes: a critical assessment [My Copy] Bioinformatics, Vol. 23, No. 17. (1 September 2007), pp. 2203-2209. by Huan-Xiang Zhou, Sanbo Qin posted to predict docking complex by dfdong on 2009-11-03 15:03:56 as along with 14 people jinghu_fandm flbarroso timg phoenixzxl tjimenez bicko malcook zwang cabbagezs niallhaslam carlescorbi marti higueruelo kintoki
	Accurate Prediction of Peptide Binding Sites on Protein Surfaces [My Copy] PLoS Comput Biol, Vol. 5, No. 3. (27 March 2009), e1000335. by Evangelia Petsalaki, Alexander Stark, Eduardo García-Urdiales, Robert B. Russell posted to predict docking complex by dfdong on 2009-11-03 15:02:34 as along with 8 people and 1 group higueruelo pablocarb nickolay phoenixzxl neils idoerg sobolevnrm paulschlesinger baker-group
	Identification of computational hot spots in protein interfaces: combining solvent accessibility and inter-residue potentials improves the accuracy. [My Copy] Bioinformatics (Oxford, England), Vol. 25, No. 12. (15 June 2009), pp. 1513-1520. by Nurcan Tuncbag, Attila Gursoy, Ozlem Keskin posted to predict docking complex by dfdong on 2009-11-03 15:02:04 as along with 5 people and 1 group ubcg08l marti apaydin kshameer phoenixzxl structural_bioinformatics

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structure_evolution	53
second_evolution	35
coevolution	27
docking	22
predict	19
complex	13
tool	12
screen	10
polymerase	9
review	7
folding	7
window	7
ortholog	6
threading	6
tree_path	6
analysis	5
ppi	5
genome_wide	5
drosophilar	5
window_contact	4
database	4
coevoluion_interface	4
contact	4
evolution	4
immune	4
patch	3
sequence_weighting	3
folding_evolution	3
aagrouping	3
check	2
ml	2
segment	2
seq_interface	2
hmm	2
function_site	2
study	2
xray	2
aacontact	1
phylip	1
conservation	1
ddi	1
motif	1
decoy	1
ancestor	1
disorder	1
stabilization_center	1

dfdong's predict [19 articles] Export

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