dfgreen's file-import-09-01-07b [at least 200 articles] Export

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	Continuum solvent studies of the stability of DNA, RNA, and phosphoramidate-DNA helices [My Copy] Journal of the American Chemical Society, Vol. 120 (1998), pp. 9401-9409. by J. Srinivasan, T. E. Cheatham, P. Cieplak, P. A. Kollman, D. A. Case posted to file-import-09-01-07b by dfgreen on 2009-01-07 18:52:19 as
	Exploiting the defensive sugars of HIV-1 for drug and vaccine design [My Copy] Nature, Vol. 446 (2007), pp. 1038-1045. by Christopher N. Scanlan, John Offer, Nicole Zitzmann, Raymond A. Dwek posted to file-import-09-01-07b by dfgreen on 2009-01-07 18:52:19 as
	Cyanovirin-$N$ inhibits AIDS virus infections in vaginal transmission models [My Copy] AIDS Res. Hum. Retroviruses, Vol. 20 (2004), pp. 11-18. by C. C. Tsai, P. Emau, Y. Jiang, et al.M. B. Agy, R. J. Shattock, A. Schmidt, W. R. Morton, K. R. Gustafson, M. R. Boyd posted to file-import-09-01-07b by dfgreen on 2009-01-07 18:52:19 as
	Cyanovirin-$N$ as a topical microbicide prevents rectal transmission of SHIV89.6P in macaques [My Copy] AIDS Res. Hum. Retroviruses, Vol. 19 (2003), pp. 535-541. by C. C. Tsai, P. Emau, Y. Jiang, et al.B. P. Tian, W. R. Morton, K. R. Gustafson, M. R. Boyd posted to file-import-09-01-07b by dfgreen on 2009-01-07 18:52:19 as
	Primary structure and carbohydrate binding specificity of a potent anti-HIV lectin isolated from the filamentous cyanobacterium \ Oscillatoria agardhii [My Copy] Journal of Biological Chemistry, Vol. 282 (2007), pp. 11021-11029. by Yuichiro Sata, Satomi Okuyama, Kanji Hori posted to file-import-09-01-07b by dfgreen on 2009-01-07 18:52:19 as
	Carbohydrate-binding proteins of marine invertebrates [My Copy] Russ. J. Bioorg. Chem., Vol. 33 (2007), pp. 161-169. by P. A. Lukyanov, O. V. Chernikov, S. S. Kobelev, I. V. Chikalovets, V. I. Molchanova, W. Li posted to file-import-09-01-07b by dfgreen on 2009-01-07 18:52:19 as
	A new lectin from the sea worm Serpula vermicularis: Isolation, characterization and anti-HIV activity [My Copy] Comp. Biochem. Phys. C, Vol. 145 (2007), pp. 184-193. by V. Molchanova, I. Chikalovets, O. Chernikov, et al.N. Belogortseva, W. Li, J. H. Wang, D. Y. O. Yang, Y. T. Zheng, P. Lukyanov posted to file-import-09-01-07b by dfgreen on 2009-01-07 18:52:19 as
	Crystallographic, thermodynamic, and molecular modeling studies of the mode of binding of oligosaccharids to the potent antiviral protein griffithsin [My Copy] Proteins: Structure, Function, and Bioinformatics, Vol. 67 (2007), pp. 661-670. by Natasza E. Ziólkowska, Shilpa R. Shenoy, Barry R. O'Keefe, et al.James B. Mcmahon, Kenneth E. Palmer, Raymond A. Dwek, Mark R. Wormald, Alexander Wlodawer posted to file-import-09-01-07b by dfgreen on 2009-01-07 18:52:19 as
	Crystallographic studies of the antiviral protein griffithsin with glucose and $N$-acetylglucosamine [My Copy] Protein Science, Vol. 16 (2007), pp. 1485-1489. by Natasza E. Ziólkowska, Shilpa R. Shenoy, Barry R. O'Keefe, Alexander Wlodawer posted to file-import-09-01-07b by dfgreen on 2009-01-07 18:52:19 as
	Domain-swapped structure of the potent antiviral protein griffithsin and its mode of carbohydrate binding [My Copy] Structure, Vol. 14 (2006), pp. 1127-1135. by Natasza E. Ziólkowska, Barry R. O'Keefe, Toshiyuki Mori, et al.Charles Zhu, Barbara Giomarelli, Fakhrieh Vojdani, Kenneth E. Palmer, James B. Mcmahon, Mark R. Wormald, Alexander Wlodawer posted to file-import-09-01-07b by dfgreen on 2009-01-07 18:52:19 as
	Potent anti-HIV activity of scytovirin domain 1 peptide [My Copy] Peptides, Vol. 27 (2006), pp. 1668-1675. by C. Xiong, Barry R. O'Keefe, Andrew R. Byrd, James B. Mcmahon posted to file-import-09-01-07b by dfgreen on 2009-01-07 18:52:19 as
	Atomic-resolution crystal structure of the antiviral lectin scytovirin [My Copy] Protein Science, Vol. 16 (2007), pp. 2765-2760. by Tinoush Moulaei, Istvan Botos, Natasza E. Ziólkowska, et al.Heidi R. Bokesch, Lauren R. Krumpe, Tawnya C. Mckee, Barry R. O'Keefe, Zbigniew Dauter, Alexander Wlodawer posted to file-import-09-01-07b by dfgreen on 2009-01-07 18:52:19 as
	The novel fold of scytovirin reveals a new twist for antiviral inhibitors [My Copy] Journal of Molecular Biology, Vol. 369 (2007), pp. 451-461. by Robert L. Mcfeeters, Changyun Xiong, Barry R. O'Keefe, et al.Heidi R. Bokesch, James B. Mcmahon, Daniel M. Ratner, Riccardo Castelli, Peter H. Seeberger, Andrew R. Byrd posted to file-import-09-01-07b by dfgreen on 2009-01-07 18:52:19 as
	Crystal structures of the HIV-1 inhibitory cyanobacterial protein MVL free and bound to Man$_3$GlcNAc$_2$ [My Copy] Journal of Biological Chemistry, Vol. 280 (2005), pp. 29269-29276. by David C. Williams, Jae Y. Lee, Mengli Cai, Carole A. Bewley, Marius G. Clore posted to file-import-09-01-07b by dfgreen on 2009-01-07 18:52:19 as
	New carbvohydrate specificity and HIV-1 fusion blocking activity of the cyanobacterial protein MVL: NMR, ITC and sedimentation equilibrium studies [My Copy] Journal of Molecular Biology, Vol. 339 (2004), pp. 901-914. by Carole A. Bewley, Mengi Cai, Satyajit Ray, Rodolfo Ghirlando, Masato Yamaguchi, Koji Muramoto posted to file-import-09-01-07b by dfgreen on 2009-01-07 18:52:19 as
	Structures of the complexes of a potent anti-HIV protein cyanovirin-$N$ and high mannose oligosaccharides [My Copy] Journal of Biological Chemistry, Vol. 277 (2002), pp. 34336-34342. by Istvan Botos, Barry R. O'Keefe, Shilpa R. Shenoy, et al.Laura K. Cartner, Daniel M. Ratner, Peter H. Seeberger, Michael R. Boyd, Alexander Wlodawer posted to file-import-09-01-07b by dfgreen on 2009-01-07 18:52:19 as
	Site-specific discrimination by cyanovirin-N for $\α$-linked trisaccharides comprising the three arms of Man$_8$ and Man$_9$ [My Copy] Journal of Molecular Biology, Vol. 322 (2002), pp. 881-889. by Carole A. Bewley, Shigeki Kiyonaka, Itaru Hamachi posted to file-import-09-01-07b by dfgreen on 2009-01-07 18:52:18 as
	The potent anti-HIV protein cyanovirin-N contains two novel carbohydrate binding sites that selectively bind to Man$_8$D1D3 and Man$_9$ with nanomolar affinity: Implications for binding to the HIV envelope protein gp120 [My Copy] Journal of the American Chemical Society, Vol. 123 (2001), pp. 3892-3902. by Carole A. Bewley, Sarah O. Quintero posted to file-import-09-01-07b by dfgreen on 2009-01-07 18:52:18 as
	Solution Structure of a Cyanovirin-N:Man$\α$1-2Man$\α$ complex: Structural basis for high-affiinity carbohydrate-mediated binding [My Copy] Structure, Vol. 9 (2001), pp. 931-940. by Carole A. Bewley posted to file-import-09-01-07b by dfgreen on 2009-01-07 18:52:18 as
	Crystal structure of cyanovirin-N, a potent HIV-inactivating protein, shows unexpected domain swapping [My Copy] Journal of Molecular Biology, Vol. 288 (1999), pp. 403-412. by Fan Yang, Carole A. Bewley, John M. Louis, et al.Kirk R. Gustafson, Michael R. Boyd, Angela M. Gronenborn, Marius G. Clore, Alexander Wlodawer posted to file-import-09-01-07b by dfgreen on 2009-01-07 18:52:18 as
	Solution structure of cyanovirin-N, a potent HIV-inactivating protein [My Copy] Nature Structural Biology, Vol. 5 (1998), pp. 571-578. by Carole A. Bewley, Kirk R. Gustafson, Micheal R. Boyd, et al.David G. Covell, Ad Bax, Marius G. Clore, Angela M. Gronenborn posted to file-import-09-01-07b by dfgreen on 2009-01-07 18:52:18 as
	Recombinant production of cyanovirin-N, a potent human immunodeficiency virus-inactivating protein derived from a cultured cyanobacterium [My Copy] Protin Expres. Purif., Vol. 12 (1998), pp. 151-158. by Toshiyuki Mori, Kirk R. Gustafson, Lewis K. Pannell, et al.Robert H. Shoemaker, Lin Wu, James B. Mcmahon, Michael R. Boyd posted to file-import-09-01-07b by dfgreen on 2009-01-07 18:52:18 as
	Isolation, primary sequence determination, and disulfide bond structure of cyanovirin-N, an anti-HIV (human immunodeficiency virus) protein from the cyanobacterium \ Nostoc ellipsosporum [My Copy] Biochem. Biophys. Res. Comm., Vol. 238 (1997), pp. 223-228. by Kirk R. Gustafson, Raymond, Louis E. Henderson, et al. John, James B. Mcmahon, Umamaheswari Rajamani, Lewis K. Pannell, Michael R. Boyd posted to file-import-09-01-07b by dfgreen on 2009-01-07 18:52:18 as
	Discovery of cyanovirin-N, a novel human immunodeficiency virus-inactivating protein that binds viral surface envelope glycoprotein gp120: Potential applications to microbicide development [My Copy] Antimicrob. Agents Chemother., Vol. 41 (1997), pp. 1521-1530. by Michael R. Boyd, Kirk R. Gustafson, James B. Mcmahon, et al.Robert H. Shoemaker, Barry R. O'Keefe, Robert J. Gulakowski, Lin Wu, Carolyn, Michael J. Currens, John, Robert W. Buckheit, Peter L. Nara, Lewis K. Pannell, Raymond, Louis E. Henderson posted to file-import-09-01-07b by dfgreen on 2009-01-07 18:52:18 as
	Computational study of the dynamics of mannose disaccharides free in solution and bound to the potent anti-HIV virucidal protein cyanovirin [My Copy] Journal of Physical Chemistry B, Vol. 109 (2005), pp. 3639-3647. by C. J. Margulis posted to file-import-09-01-07b by dfgreen on 2009-01-07 18:52:18 as
	Inhibition of HIV entry by carbohydrate-binding proteins [My Copy] Antiviral Res., Vol. 71 (2006), pp. 237-247. by J. Balzarini posted to file-import-09-01-07b by dfgreen on 2009-01-07 18:52:17 as
	Structures of HIV-1 gp120 envelope glycoproteins from laboratory-adapted and primary isolates [My Copy] Structure, Vol. 8 (2000), pp. 1329-1339. by P. D. Kwong, R. Wyatt, S. Majeed, et al.J. Robinson, R. W. Sweet, J. Sodroski, W. A. Hendrickson posted to file-import-09-01-07b by dfgreen on 2009-01-07 18:52:17 as
	Role of envelope glycoprotein carbohydrate in human immunodeficiency virus (HIV) infectivity and virus-induced cell fusion [My Copy] J. Exper. Med., Vol. 164 (1986), pp. 2101-2106. by Jeffrey Lifson, Steven Coutré, Emina Huang, Edgar Engleman posted to file-import-09-01-07b by dfgreen on 2009-01-07 18:52:17 as
	CCR5 use by human immunodeficiency virus type 1 is associated closely with the gp120 V3 loop $N$-linked glycosylation site [My Copy] J. Gen. Virol., Vol. 87 (2006), pp. 607-612. by Peter Clevestig, Lotta Pramanik, Thomas Leitner, Anneka Ehrnst posted to file-import-09-01-07b by dfgreen on 2009-01-07 18:52:17 as
	The N-terminal V3 loop glycan modulates the interaction of clade A and B human immunodeficiency virus type 1 envelopes iwth CD4 and chemokine receptors [My Copy] J. Virol., Vol. 74 (2000), pp. 11008-11016. by Susan E. Malenbaum, D. Yang, Lisa Cavacini, Marshall Posner, James Robinson, Cecilia C. Mayer posted to file-import-09-01-07b by dfgreen on 2009-01-07 18:52:17 as
	$N$-linked glycoscylation sites adjacent to and within the V1/V2 and the V3 loops of dualtropic human immunodeficiency virus type 1 isolate DH120 gp120 affect coreceptor usage and cellular tropism [My Copy] J. Virol., Vol. 75 (2001), pp. 5998-6006. by Robert A. Ogert, Myung K. Lee, William Ross, Alicia B. White, Malcolm A. Martin, Michael W. Cho posted to file-import-09-01-07b by dfgreen on 2009-01-07 18:52:17 as
	Loss of $N$-linked glycans in the V3-loop region of gp120 is correlated to an enhance infectivity of HIV-1 [My Copy] Glycobiology, Vol. 11 (2001), pp. 11-19. by Svenja Polzer, Matthias T. Dittmar, Herbert Schmitz, et al.Brend Meyer, Harm Müller, Hans G. Kräusslich, Michael Schreiber posted to file-import-09-01-07b by dfgreen on 2009-01-07 18:52:17 as
	Importance of the $N$-glycan in the V3 loop of HIV-1 envelope protein for CXCR-4- but not CCR-5-dependent fusion [My Copy] FEBS Letters, Vol. 426 (1998), pp. 367-372. by Emi E. Nakayama, Tatsuo Shioda, Masashi Tatsumi, et al.Xin Xiaomi, Deshan Yu, Shinji Ohgimoto, Atsushi Kato, Yuko Sakai, Yukano Ohnishi, Yoshiyuki Nagai posted to file-import-09-01-07b by dfgreen on 2009-01-07 18:52:17 as
	Characterization of neutralization epitopes in the V2 region of human immunodeficiency virus type 1 gp120: Role of glycosylation in the correct folding of the V1/V2 domain [My Copy] J. Virol., Vol. 69 (1995), pp. 2271-2278. by Z. Wu, S. C. Kayman, W. Honnen, et al.K. Revesz, H. Chen, Vijh, S. A. Tilley, J. Mckeating, C. Shotton, A. Pinter posted to file-import-09-01-07b by dfgreen on 2009-01-07 18:52:17 as
	The glycosylation of human immunodeficiency virus type 1 transmembrane glycoprotein (gp41) is important for the efficient intracellular transport of the envelope precursor gp160 [My Copy] J. Gen. Virol., Vol. 76 (1995), pp. 1509-1514. by Emmanuel Fenouillet, Ian M. Jones posted to file-import-09-01-07b by dfgreen on 2009-01-07 18:52:17 as
	Deletion of a single $N$-linked glycosylation site from the transmembrane envelope protein of human immunodeficiency virus type 1 stops cleavage and transport of gp160 preventing \ env-mediated fusion [My Copy] J. Gen. Virol., Vol. 75 (1994), pp. 1389-1397. by Bret Dash, Alison Mcintosh, Winsome Barrett, Rod Daniels posted to file-import-09-01-07b by dfgreen on 2009-01-07 18:52:17 as
	V2 loop glycosylation of the human immunodeficiency virus type 1 SF162 envelope facilates interation of this protein with CD4 and CCR5 receptors and protects the virus from neutralization by anti-V3 loop and anti-CD4 binding site antibodies [My Copy] J. Virol., Vol. 74 (2000), pp. 6769-6776. by Amy Ly, Leonidas Stamatatos posted to file-import-09-01-07b by dfgreen on 2009-01-07 18:52:17 as
	A role for carbohydrates in immune evasion in AIDS [My Copy] Nature Med., Vol. 4 (1998), pp. 679-684. by Julie N. Reitter, Robert E. Means, Ronald C. Desrosiers posted to file-import-09-01-07b by dfgreen on 2009-01-07 18:52:17 as
	Specific $N$-linked and $O$-linked glycosylation modifications in the envelope V1 domain of simian immunodeficiency virus variants that evolve in the host alter recognition by neutralizing antibodies [My Copy] J. Virol., Vol. 71 (1997), pp. 7719-7727. by Bryce Chackerian, Lyle M. Rudenskey, Julie Overbaugh posted to file-import-09-01-07b by dfgreen on 2009-01-07 18:52:17 as
	Rapid selection for an $N$-linked oligosaccharide by monoclonal antibodies directed against the V3 loop of human immunodeficiency virus type 1 [My Copy] J. Gen. Virol., Vol. 77 (1996), pp. 753-758. by Kristian Schonning, Britt Jansson, Sigvard Olofssn, John posted to file-import-09-01-07b by dfgreen on 2009-01-07 18:52:17 as
	Assignment of interchain disulfide bonds and characterization of potential glycosylation sites of the type 1 recombinant human immunodeficiency virus envelope glycoprotein (gp120) expressed in Chinese hamster ovary cells [My Copy] Journal of Biological Chemistry, Vol. 265 (1990), pp. 10373-10382. by Cordelia K. Leonard, Michael W. Spellman, Lavon Riddle, Reed J. Harris, James N. Thomas, Timothy J. Gregory posted to file-import-09-01-07b by dfgreen on 2009-01-07 18:52:17 as
	Sequential CD4-coreceptor interactions in human immunodeficiency virus type 1 env function: Soluble CD4 activates env for coreceptor-dependent fusion and reveals blocking activities of antibodies agains cryptic conserved epitopes on gp120 [My Copy] J. Virol., Vol. 74 (2000), pp. 326-333. by Karl Salzwedel, Erica D. Smith, Barna Dey, Edward A. Berger posted to file-import-09-01-07b by dfgreen on 2009-01-07 18:52:17 as
	Exploring the origins of binding specificity through the computational redesign of calmodulin [My Copy] Proceedings of the National Academy of Sciences U.S.A., Vol. 100 (2003), pp. 13274-13279. by J. M. Shifman, S. L. Mayo posted to file-import-09-01-07b by dfgreen on 2009-01-07 18:52:17 as
	Sequence motifs for calmodulin recognition [My Copy] The FASEB Journal, Vol. 11 (1997), pp. 331-340. by Allen R. Rhoads, Felix Friedberg posted to file-import-09-01-07b by dfgreen on 2009-01-07 18:52:17 as
	Determinants of binding affinity and specificity for the interaction of TEM-1 and SME-1 $\β$-lactamase with $\β$-lactamase inhibitory protein [My Copy] Journal of Biological Chemistry, Vol. 278 (2003), pp. 45706-45712. by Zhen Zhang, Timothy Palzkill posted to file-import-09-01-07b by dfgreen on 2009-01-07 18:52:16 as
	Exploring the charge space of protein--protein association: A Proteomic Study [My Copy] Proteins: Structure, Function, and Bioinformatics, Vol. 60 (2005), pp. 341-352. by Yossi Shaul, Gideon Schreiber posted to file-import-09-01-07b by dfgreen on 2009-01-07 18:52:16 as
	Electrostatically optimized Ras-binding Ral guanine dissociation stimulator mutants increase the rate of association by stabilizing the encounter complex [My Copy] Proceedings of the National Academy of Sciences U.S.A., Vol. 101 (2004), pp. 9223-9228. by C. Kiel, T. Selzer, Y. Shaul, G. Schreiber, C. Herrmann posted to file-import-09-01-07b by dfgreen on 2009-01-07 18:52:16 as
	New insights into the mechanism of protein--protein association [My Copy] Proteins: Structure, Function, and Genetics, Vol. 45 (2001), pp. 190-198. by Tzvia Selzer, Gideon Schreiber posted to file-import-09-01-07b by dfgreen on 2009-01-07 18:52:16 as
	Rational design of faster associating and tighter binding protein complexes [My Copy] Nature Structural Biology, Vol. 7 (2000), pp. 537-541. by T. Selzer, S. Albeck, G. Schreiber posted to file-import-09-01-07b by dfgreen on 2009-01-07 18:52:16 as
	Predicting the rate enhancement of protein complex formation from the electrostatic energy of interaction [My Copy] Journal of Molecular Biology, Vol. 287 (1999), pp. 409-419. by T. Selzer, G. Schreiber posted to file-import-09-01-07b by dfgreen on 2009-01-07 18:52:16 as

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file-import-09-01-07b	274
electrostatics	96
protein	90
design	63
dynamics	47
molecular	47
ligand	46
solvation	44
binding	39
packing	19
quantum-mechanics	19
charges	18
optimization	18
free-energy	17
interactions	17
pka	17
review	17
perturbation	16
ab-initio	15
force-fields	15
generalized-born	13
hydrophobic	13
engineering	11
protein-protein	11
software	11
specificity	9
stability	9
poisson-boltzmann	7
structure	7
biopharmaceuticals	6
carbohydrate	6
conformational	6
docking	5
enzyme	5
biology	4
catalysis	4
dna	4
homology	4
preferences	4
sequence	4
systems	4
entropy	3
kinetics	3
linear-programming	3
quadratic-programming	3
semi-empirical	3
continuum-vdw	2
monte-carlo	2
protonation	2
rna	2
structure-prediction	2
visualization	2
water	2
action-at-a-distance	1
allostery	1
analysis	1
atp	1
brownian	1
calmodulin	1
dissociation	1
effect	1
electrochemistry	1
folding	1
g-protein	1
harmonics	1
hierarchicies	1
mean-field	1
membrane-association	1
phylogeny	1
proteomics	1
resistance	1
rna-protein	1
senstivity	1
text	1
vibrational	1

dfgreen's file-import-09-01-07b [at least 200 articles] Export

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