dfgreen's packing [19 articles] Export

Recent papers added to dfgreen's library classified by the tag packing. You can also see everyone's packing.

	Asparagine and glutamine: using hydrogen atom contacts in the choice of side-chain amide orientation. [My Copy] J Mol Biol, Vol. 285, No. 4. (29 January 1999), pp. 1735-1747. by J. M. Word, S. C. Lovell, J. S. Richardson, D. C. Richardson posted to interactions packing protonation software by dfgreen on 2009-01-08 22:58:46 as along with 4 people and 2 groups kaarsinogen jwm j3xucite blackbart Radiation_Damage Stressosome
	The dead-end elimination theorem and its use in protein side-chain positioning [My Copy] Nature, Vol. 356, No. 6369. (April 1992), pp. 539-542. by Johan Desmet, Marc D. Maeyer, Bart Hazes, Ignace Lasters posted to design packing protein by dfgreen on 2009-01-08 22:13:57 as along with 3 people dgront bluvsh1 mijam
	Backbone-dependent rotamer library for proteins. Application to side-chain prediction. [My Copy] Journal of molecular biology, Vol. 230, No. 2. (20 March 1993), pp. 543-574. by R. L. Dunbrack, M. Karplus posted to packing protein structure by dfgreen on 2009-01-08 21:56:26 as along with 3 people and 1 group carlosjavierna nknii carlk TCR_Signaling
	Efficient rotamer elimination applied to protein side-chains and related spin glasses. [My Copy] Biophys J, Vol. 66, No. 5. (May 1994), pp. 1335-1340. by R. F. Goldstein posted to design packing protein by dfgreen on 2009-01-08 21:49:12 as along with 6 people dgront bluvsh1 kazemi rsantana mijam carlk
	Enhanced dead-end elimination in the search for the global minimum energy conformation of a collection of protein side chains. [My Copy] Protein engineering, Vol. 8, No. 8. (August 1995), pp. 815-822. by I. Lasters, M. De Maeyer, J. Desmet posted to design packing protein by dfgreen on 2009-01-08 21:46:15 as along with 1 person carlk
	Exploring the conformational space of protein side chains using dead-end elimination and the A* algorithm. [My Copy] Proteins, Vol. 33, No. 2. (1 November 1998), pp. 227-239. by A. R. Leach, A. P. Lemon posted to design packing protein by dfgreen on 2009-01-08 21:45:23 as along with 2 people karinaecomp karbak
	Application of a self-consistent mean field theory to predict protein side-chains conformation and estimate their conformational entropy. [My Copy] J Mol Biol, Vol. 239, No. 2. (3 June 1994), pp. 249-275. by P. Koehl, M. Delarue posted to conformational design entropy packing protein by dfgreen on 2009-01-08 21:40:53 as along with 1 person bluvsh1
	De novo protein design. I. In search of stability and specificity. [My Copy] Journal of molecular biology, Vol. 293, No. 5. (12 November 1999), pp. 1161-1181. by P. Koehl, M. Levitt posted to design packing protein by dfgreen on 2009-01-08 21:40:02 as
	Structure-based conformational preferences of amino acids [My Copy] Proceedings of the National Academy of Sciences of the United States of America, Vol. 96, No. 22. (26 October 1999), pp. 12524-12529. by Patrice Koehl, Michael Levitt posted to conformational design packing preferences protein by dfgreen on 2009-01-08 21:37:57 as
	Prediction of protein side-chain conformation by packing optimization. [My Copy] Journal of molecular biology, Vol. 217, No. 2. (20 January 1991), pp. 373-388. by C. Lee, S. Subbiah posted to design packing protein by dfgreen on 2009-01-08 21:36:22 as
	Optimal Sequence Selection in Proteins of Known Structure by Simulated Evolution [My Copy] Proceedings of the National Academy of Sciences, Vol. 91, No. 13. (21 June 1994), pp. 5803-5807. by H. W. Hellinga, F. M. Richards posted to design packing protein by dfgreen on 2009-01-08 21:34:53 as along with 2 people jwm msuarezdiez
	Generalized dead-end elimination algorithms make large-scale protein side-chain structure prediction tractable: implications for protein design and structural genomics. [My Copy] J Mol Biol, Vol. 307, No. 1. (16 March 2001), pp. 429-445. by L. L. Looger, H. W. Hellinga posted to design packing protein by dfgreen on 2009-01-08 21:33:59 as along with 4 people and 1 group nknii dgront mijam carlk TCR_Signaling
	De novo design of the hydrophobic cores of proteins. [My Copy] Protein Sci, Vol. 4, No. 10. (October 1995), pp. 2006-2018. by J. R. Desjarlais, T. M. Handel posted to design packing protein by dfgreen on 2009-01-08 21:27:26 as along with 3 people and 1 group oteri ashaytan chgjb Structural Biology Group TorVergata
	Solving and analyzing side-chain positioning problems using linear and integer programming [My Copy] Bioinformatics, Vol. 21, No. 7. (01 April 2005), pp. 1028-1039. by Kingsford, Chazelle Bernard, Singh Mona posted to design packing protein by dfgreen on 2009-01-08 21:26:09 as along with 2 people apaydin bluvsh1
	A combinatorial approach to protein docking with flexible side chains. [My Copy] J Comput Biol, Vol. 9, No. 4. (2002), pp. 597-612. by E. Althaus, O. Kohlbacher, H. P. Lenhof, P. Müller posted to docking interactions packing protein-protein by dfgreen on 2009-01-08 21:24:34 as along with 2 people karinaecomp bluvsh1
	Improved modeling of side-chains in proteins with rotamer-based methods: A flexible rotamer model [My Copy] Proteins: Structure, Function, and Genetics, Vol. 37, No. 4. (1999), pp. 530-543. by Joaquim Mendes, António M. Baptista, Maria A. Carrondo, Cláudio M. Soares posted to design packing protein by dfgreen on 2009-01-08 21:23:04 as along with 2 people apaydin rsantana
	Repacking protein cores with backbone freedom: structure prediction for coiled coils. [My Copy] Proc Natl Acad Sci U S A, Vol. 92, No. 18. (29 August 1995), pp. 8408-8412. by P. B. Harbury, B. Tidor, P. S. Kim posted to design packing protein by dfgreen on 2009-01-08 01:43:13 as along with 3 people kgutwin oteri bethbromley
	Electrostatics and Packing in Biomolecules: Accounting for Conformational Change in Protein Folding and Binding [My Copy] (June 2002) by Justin A. Caravella posted to design electrostatics packing protein by dfgreen on 2009-01-07 18:52:29 as
	Protein design with hierarchical treatment of solvation and electrostatics [My Copy] (September 2002) by Karl J. M. Hanf posted to design electrostatics packing protein by dfgreen on 2009-01-07 18:52:28 as

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file-import-09-01-07b	274
electrostatics	96
protein	90
design	63
dynamics	47
molecular	47
ligand	46
solvation	44
binding	39
packing	19
quantum-mechanics	19
charges	18
optimization	18
free-energy	17
interactions	17
pka	17
review	17
perturbation	16
ab-initio	15
force-fields	15
generalized-born	13
hydrophobic	13
engineering	11
protein-protein	11
software	11
specificity	9
stability	9
poisson-boltzmann	7
structure	7
biopharmaceuticals	6
carbohydrate	6
conformational	6
docking	5
enzyme	5
biology	4
catalysis	4
dna	4
homology	4
preferences	4
sequence	4
systems	4
entropy	3
kinetics	3
linear-programming	3
quadratic-programming	3
semi-empirical	3
continuum-vdw	2
monte-carlo	2
protonation	2
rna	2
structure-prediction	2
visualization	2
water	2
action-at-a-distance	1
allostery	1
analysis	1
atp	1
brownian	1
calmodulin	1
dissociation	1
effect	1
electrochemistry	1
folding	1
g-protein	1
harmonics	1
hierarchicies	1
mean-field	1
membrane-association	1
phylogeny	1
proteomics	1
resistance	1
rna-protein	1
senstivity	1
text	1
vibrational	1

dfgreen's packing [19 articles] Export

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