dgront's library 520 articles Export

	Refinement of Multidomain Protein Structures by Combination of Solution Small-Angle X-ray Scattering and NMR Data [My Copy] Journal of the American Chemical Society, Vol. 127, No. 47. (1 November 2005), pp. 16621-16628. by Alexander Grishaev, Justin Wu, Jill Trewhella, Ad Bax posted to saxs nmr experimental_restraints by dgront on 2009-11-03 21:50:02 as along with 1 person apaydin
	High-resolution solid-state NMR applied to polypeptides and membrane proteins. [My Copy] Accounts of chemical research, Vol. 36, No. 11. (November 2003), pp. 858-865. by Sorin Luca, Henrike Heise, Marc Baldus posted to nmr experimental by dgront on 2009-09-26 02:15:16 as
	Protein sectors: evolutionary units of three-dimensional structure. [My Copy] Cell, Vol. 138, No. 4. (21 August 2009), pp. 774-786. by Najeeb Halabi, Olivier Rivoire, Stanislas Leibler, Rama Ranganathan posted to sequence_alignment by dgront on 2009-09-25 23:29:32 as along with 10 people and 1 group yyfwuhan cmzmasek robfsouza pansapiens pablocarb vvoorr biomcgary dayjm jwm jbhiatt Marcotte_Lab
	Automated assignment of ambiguous nuclear overhauser effects with ARIA. [My Copy] Methods in enzymology, Vol. 339 (2001), pp. 71-90. by J. P. Linge, S. I. O'Donoghue, M. Nilges posted to nmr experimental_restraints by dgront on 2009-09-23 02:37:09 as along with 1 person laurabailey
	Structure of a protein determined by solid-state magic-angle-spinning NMR spectroscopy [My Copy] Nature, Vol. 420, No. 6911. (07 November 2002), pp. 98-102. by Federica Castellani, Barth van Rossum, Annette Diehl, Mario Schubert, Kristina Rehbein, Hartmut Oschkinat posted to nmr experimental by dgront on 2009-09-09 22:29:08 as along with 4 people cychen_cite InesLehner viktor21614 yxue
	Automated structure determination from NMR spectra [My Copy] European Biophysics Journal, Vol. 38, No. 2. (1 February 2009), pp. 129-143. by Peter Güntert posted to nmr experimental_restraints by dgront on 2009-09-07 12:18:12 as along with 3 people lna bmduggan apaydin
	Probik: Protein Backbone Motion by Inverse Kinematics [My Copy] The International Journal of Robotics Research, Vol. 24, No. 11. (1 November 2005), pp. 971-982. by Kimberly Noonan, David O'Brien, Jack Snoeyink posted to torsion_angles by dgront on 2009-09-07 11:22:26 as along with 1 person apaydin
	TALOS+: a hybrid method for predicting protein backbone torsion angles from NMR chemical shifts. [My Copy] Journal of biomolecular NMR, Vol. 44, No. 4. (August 2009), pp. 213-223. by Yang Shen, Frank Delaglio, Gabriel Cornilescu, Ad Bax posted to torsion_angles nmr experimental_restraints by dgront on 2009-09-07 09:56:48 as along with 4 people laurabailey viktor21614 anna_yershova apaydin
	X-ray solution scattering (SAXS) combined with crystallography and computation: defining accurate macromolecular structures, conformations and assemblies in solution [My Copy] Quarterly Reviews of Biophysics, Vol. 40, No. 03. (14 August 2007), pp. 191-285. by Christopher D. Putnam, Michal Hammel, Greg L. Hura, John A. Tainer posted to xray saxs review experimental_restraints by dgront on 2009-08-11 23:35:15 as along with 4 people paulschlesinger bratwurst birte ColumbusLabs
	Small-Angle X-Ray Scattering from RNA, Proteins, and Protein Complexes [My Copy] Annual Review of Biophysics and Biomolecular Structure, Vol. 36, No. 1. (2007), pp. 307-327. by Jan Lipfert, Sebastian Doniach posted to xray saxs review experimental_restraints by dgront on 2009-08-11 23:34:10 as along with 1 person higueruelo
	Island method for estimating the statistical significance of profile-profile alignment scores. [My Copy] BMC bioinformatics, Vol. 10, No. 1. (2009), 112. by Aleksandar Poleksic posted to profiles sequence_alignment by dgront on 2009-08-11 05:43:35 as along with 1 person zwang
	Biased fragment distribution in MC simulation of protein folding [My Copy] Journal of Computational Chemistry, Vol. 25, No. 15. (2004), pp. 1895-1903. by Eric Martineau, Pierre-Jean L'Heureux, John R. Gunn posted to internal_coordinates by dgront on 2009-07-23 23:26:40 as
	Hierarchical minimization with distance and angle constraints [My Copy] Proc Int Conf Intell Syst Mol Biol In Proceedings of the 6th International Conference on Intelligent Systems for Molecular Biology (1998), pp. 78-84. by John R. Gunn posted to internal_coordinates by dgront on 2009-07-23 22:20:16 as
	A structure refinement protocol combining NMR residual dipolar couplings and small angle scattering restraints [My Copy] Journal of Biomolecular NMR, Vol. 41, No. 4. (1 August 2008), pp. 199-208. by F. Gabel, B. Simon, M. Nilges, M. Petoukhov, D. Svergun, M. Sattler posted to experimental_restraints nmr saxs by dgront on 2009-07-18 00:59:52 as
	Clustering by Passing Messages Between Data Points [My Copy] Science, Vol. 315, No. 5814. (16 February 2007), pp. 972-976. by Brendan J. Frey, Delbert Dueck posted to clustering by dgront on 2009-07-15 23:06:08 as along with 37 people and 1 group singhsh gavin1332 Lestropie babakap sen_cheng davidecellai zibuyu ilyashl trutat1 sfuniak doitian kuhn xtizon jfr jmeppley stevedebacker arjen sterovetta sdvillal nickluscombe rdiaz ianturton macle bluto rsantana grahamc ccr hexuming worldsun dimatura paulovn daniel51 matjes johnkork XIANG iris_2001 soundray EBI-regulation
	REMO: A new protocol to refine full atomic protein models from C-alpha traces by optimizing hydrogen-bonding networks [My Copy] Proteins: Structure, Function, and Bioinformatics, Vol. 76, No. 3. (15 August 2009), pp. 665-676. by Yunqi Li, Yang Zhang posted to atom_reconstruction refinement by dgront on 2009-07-15 22:34:38 as along with 1 person mijam
	Nothing about protein structure classification makes sense except in the light of evolution [My Copy] Current Opinion in Structural Biology, Vol. 19, No. 3. (24 April 2009), pp. 329-334. by Ruben E. Valas, Song Yang, Philip E. Bourne posted to protein_structure by dgront on 2009-07-15 22:00:48 as along with 12 people and 3 groups mkotlyar skywalkerus02 nyyu robfsouza apaydin barry coela Zephyrus sobolevnrm zwang friendpine paulschlesinger structural_bioinformatics R.E.A.D baker-group
	A target function for quaternary structural refinement from small angle scattering and NMR orientational restraints [My Copy] European Biophysics Journal, Vol. 35, No. 4. (27 April 2006), pp. 313-327. by Frank Gabel, Bernd Simon, Michael Sattler posted to experimental_restraints saxs by dgront on 2009-07-15 02:35:05 as
	United we stand: combining structural methods [My Copy] Current Opinion in Structural Biology, Vol. 18, No. 5. (October 2008), pp. 617-622. by Nathan P. Cowieson, Bostjan Kobe, Jennifer L. Martin posted to experimental_restraints nmr review saxs xray by dgront on 2009-07-15 00:54:30 as along with 2 people chad_davis paulschlesinger
	Segmented hash: an efficient hash table implementation for high performance networking subsystems [My Copy] In ANCS '05: Proceedings of the 2005 ACM symposium on Architecture for networking and communications systems (2005), pp. 91-103. by Sailesh Kumar, Patrick Crowley posted to algorithms by dgront on 2009-07-11 22:34:25 as along with 1 person jweslley
	Space efficient hash tables with worst case constant access time [My Copy] (2003) by D. Fotakis, R. Pagh, P. Sanders, P. Spirakis posted to algorithms by dgront on 2009-07-11 22:33:08 as along with 1 person benwei
	Advances and pitfalls of protein structural alignment. [My Copy] Current opinion in structural biology, Vol. 19, No. 3. (27 June 2009), pp. 341-348. by Hitomi Hasegawa, Liisa Holm posted to review structural_alignment by dgront on 2009-07-09 00:38:05 as along with 4 people and 3 groups sebk davidalee sobolevnrm barry OPIG Orengo Group Journal Picks structural_bioinformatics
	Multidimensional solid state NMR of anisotropic interactions in peptides and proteins [My Copy] The Journal of Chemical Physics, Vol. 128, No. 5. (2008) by Benjamin J. Wylie, Chad M. Rienstra posted to experimental nmr by dgront on 2009-03-23 05:05:47 as along with 1 person viktor21614
	Dipolar couplings in macromolecular structure determination. [My Copy] Methods in enzymology, Vol. 339 (2001), pp. 127-174. by A. Bax, G. Kontaxis, N. Tjandra posted to experimental nmr by dgront on 2009-03-21 00:53:26 as
	Carbon-13 NMR Shielding in the Twenty Common Amino Acids: Comparisons with Experimental Results in Proteins [My Copy] Journal of the American Chemical Society, Vol. 124, No. 19. (1 May 2002), pp. 5486-5495. by Haihong Sun, Lori K. Sanders, Eric Oldfield posted to experimental nmr by dgront on 2009-03-18 23:10:45 as along with 1 person andreasauerwein
	Analytical Framework for Protein Structure Determination by Solid-State NMR of Aligned Samples [My Copy] Modern Magnetic Resonance (2006), pp. 517-526. by Alexander A. Nevzorov, Stanley J. Opella posted to experimental nmr by dgront on 2009-03-18 04:59:58 as
	NMR of peptides and proteins in oriented membranes [My Copy] Concepts in Magnetic Resonance, Vol. 14, No. 3. (2002), pp. 212-224. by Francesca M. Marassi posted to experimental experimental_restraints nmr by dgront on 2009-03-17 21:07:59 as
	Recurrent oligomers in proteins: an optimal scheme reconciling accurate and concise backbone representations in automated folding and design studies. [My Copy] Proteins, Vol. 40, No. 4. (1 September 2000), pp. 662-674. by C. Micheletti, F. Seno, A. Maritan posted to fragments by dgront on 2009-03-17 03:30:29 as along with 1 person lpfernandes
	Protein conformational space in higher order phi-Psi maps. [My Copy] Proc Natl Acad Sci U S A, Vol. 102, No. 3. (18 January 2005), pp. 618-621. by G. E. Sims, I. G. Choi, S. H. Kim posted to clustering fragments ramachandran by dgront on 2009-03-16 08:16:32 as along with 2 people ubcg08l tny
	Improved beta-protein structure prediction by multilevel optimization of nonlocal strand pairings and local backbone conformation [My Copy] Proteins: Structure, Function, and Bioinformatics, Vol. 9999, No. 9999. (2006), NA. by Philip Bradley, David Baker posted to de_novo rosetta by dgront on 2009-03-16 02:30:41 as along with 2 people zwang wouterboomsma
	Statistics review 14: Logistic regression. [My Copy] Crit Care, Vol. 9, No. 1. (February 2005), pp. 112-118. by V. Bewick, L. Cheek, J. Ball posted to review statistics by dgront on 2009-03-16 02:01:56 as along with 3 people guhjy hpiwowar nklee
	Structural biology. Protein structure initiative: phase 3 or phase out. [My Copy] Science (New York, N.Y.), Vol. 319, No. 5870. (21 March 2008), pp. 1610-1613. by R. F. Service posted to experimental xray by dgront on 2009-03-12 00:47:04 as along with 1 person reyez
	Solvent dramatically affects protein structure refinement [My Copy] Proceedings of the National Academy of Sciences, Vol. 105, No. 51. (23 December 2008), pp. 20239-20244. by Gaurav Chopra, Christopher M. Summa, Michael Levitt posted to force_field refinement by dgront on 2009-03-12 00:35:53 as along with 7 people and 4 groups rabio pavanghatty mijam barry sobolevnrm biehl itmeson structural_bioinformatics McCammon Bioinformatics baker-group
	Prediction of membrane protein structures with complex topologies using limited constraints [My Copy] Proceedings of the National Academy of Sciences, Vol. 106, No. 5. (3 February 2009), pp. 1409-1414. by P. Barth, B. Wallner, D. Baker posted to rosetta transmembrane by dgront on 2009-03-06 06:15:19 as along with 10 people and 2 groups rph sebk barry krapnik viktor21614 paulschlesinger zwang apaydin agrossfield amishp OPIG structural_bioinformatics
	Protein structure prediction: Combining de novo modeling with sparse experimental data. [My Copy] J Comput Chem (6 March 2007) by Dorota Latek, Dariusz Ekonomiuk, Andrzej Kolinski posted to cabs experimental_restraints by dgront on 2009-03-05 23:59:58 as along with 1 person wouterboomsma
	Residual dipolar coupling constants: An elementary derivation of key equations [My Copy] Concepts in Magnetic Resonance Part A, Vol. 21A, No. 1. (2004), pp. 10-21. by F. Kramer, M. V. Deshmukh, H. Kessler, S. J. Glaser posted to experimental nmr by dgront on 2009-03-03 00:38:34 as
	Bicelles: a model membrane system for all seasons? [My Copy] Structure (London, England : 1993), Vol. 6, No. 10. (15 October 1998), pp. 1227-1234. by C. R. Sanders, R. S. Prosser posted to experimental nmr by dgront on 2009-02-27 01:37:34 as
	Structure Determination of Membrane Proteins by NMR Spectroscopy [My Copy] Chemical Reviews, Vol. 104, No. 8. (2004), pp. 3587-3606. by Stanley J. Opella, Francesca M. Marassi posted to experimental experimental_restraints nmr by dgront on 2009-02-17 03:16:55 as
	Threading without optimizing weighting factors for scoring function. [My Copy] Proteins, Vol. 73, No. 3. (15 November 2008), pp. 581-596. by Y. D. Yang, C. Park, D. Kihara posted to threading by dgront on 2009-02-17 01:33:21 as
	BIOMOLECULAR SOLID STATE NMR: Advances in Structural Methodology and Applications to Peptide and Protein Fibrils1 [My Copy] Annual Review of Physical Chemistry, Vol. 52, No. 1. (2001), pp. 575-606. by Robert Tycko posted to experimental nmr by dgront on 2009-02-17 00:53:01 as
	Calculating protein structures directly from anisotropic spin interaction constraints. [My Copy] Magnetic resonance in chemistry : MRC, Vol. 44, No. 3. (March 2006), pp. 283-293. by Y. Smurnyy, S. J. Opella posted to experimental experimental_restraints nmr by dgront on 2009-02-17 00:30:44 as
	Oligomeric Structure, Dynamics, and Orientation of Membrane Proteins from Solid-State NMR [My Copy] Structure, Vol. 14, No. 12. (December 2006), pp. 1731-1740. by Mei Hong posted to experimental nmr by dgront on 2009-02-14 03:11:54 as along with 3 people girayenkavi viktor21614 EvaKaltenborn
	Order matrix analysis of residual dipolar couplings using singular value decomposition. [My Copy] J Magn Reson, Vol. 138, No. 2. (June 1999), pp. 334-342. by J. A. Losonczi, M. Andrec, M. W. Fischer, J. H. Prestegard posted to experimental_restraints nmr by dgront on 2009-02-14 02:11:00 as along with 1 person j3xucite
	De Novo Determination of Protein Backbone Structure from Residual Dipolar Couplings Using Rosetta [My Copy] Journal of the American Chemical Society, Vol. 124, No. 11. (1 March 2002), pp. 2723-2729. by Carol A. Rohl, David Baker posted to experimental_restraints nmr rosetta by dgront on 2009-02-13 02:58:08 as along with 1 person mcbla
	Structure-based function prediction: approaches and applications [My Copy] Brief Funct Genomic Proteomic, Vol. 7, No. 4. (1 July 2008), pp. 291-302. by Pier F. Gherardini, Manuela Helmer-Citterich posted to function-prediction by dgront on 2009-02-13 02:40:56 as along with 5 people sgoetz flbarroso MarcoAlvarez jameswasmuth pansapiens
	Analytical approximation to the accessible surface area of proteins. [My Copy] Proceedings of the National Academy of Sciences of the United States of America, Vol. 77, No. 4. (April 1980), pp. 1736-1740. by Shoshana J. Wodak, Joël Janin posted to surface by dgront on 2009-02-06 04:05:50 as along with 2 people melo_mcr mijam
	Joint neighbors approximation of macromolecular solvent accessible surface area. [My Copy] J Comput Chem (3 April 2007) by Georgy Rychkov, Michael Petukhov posted to surface by dgront on 2009-02-04 01:43:06 as along with 3 people mijam hryk BragilMassoud
	A new analytical method for computing solvent-accessible surface area of macromolecules and its gradients. [My Copy] Journal of computational chemistry, Vol. 26, No. 4. (March 2005), pp. 334-343. by S. Hayryan, C. K. Hu, J. Skrivánek, E. Hayryane, I. Pokorný posted to surface by dgront on 2009-02-04 01:41:30 as along with 1 person melo_mcr
	Novel computer program for fast exact calculation of accessible and molecular surface areas and average surface curvature [My Copy] Journal of Computational Chemistry, Vol. 23, No. 6. (2002), pp. 600-609. by Oleg V. Tsodikov, Thomas M. Record, Yuri V. Sergeev posted to surface by dgront on 2009-02-04 00:35:20 as along with 1 person Evangelia
	A fast recursive algorithm for molecular dynamics simulation [My Copy] Journal of Computational Physics, Vol. 106, No. 2. (June 1993), pp. 258-268. by A. Jain, N. Vaidehi, G. Rodriguez posted to algorithms internal_coordinates molecular_dynamics simulation_methods by dgront on 2009-01-09 02:11:27 as

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review	80
experimental	57
monte_carlo	45
comparative_modeling	41
force_field	35
sequence_alignment	32
nmr	26
clustering	25
threading	25
experimental_restraints	21
replica_method	21
atom_reconstruction	19
molecular_dynamics	18
simulation_methods	15
casp	14
lattice_model	14
my_own	14
rosetta	14
statistics	14
protein_structure	13
saxs	13
server	13
structural_alignment	13
tools	12
databases	10
mqap	10
proteomics	10
chain_growth	9
structural_genomics	9
systems_biology	9
minimization	8
multicanonical	8
suboptimal_alignment	8
xray	8
algorithms	7
msa-analysis	7
multihistogram	7
rotamers	7
secondary_structure	7
beta-hairpin	6
de_novo	6
docking	6
fragments	6
free_energy	6
protein_networks	6
bayesian	5
correlated-mutations	5
energy_landscape	5
evolution	5
internal_coordinates	5
molecular_complexes	5
profiles	5
surface	5
data_processing	4
function-prediction	4
genetic_algorithm	4
hmm	4
hydrogen_bonding	4
ramachandran	4
rna	4
unres	4
biomolecular_dynamics	3
chemoinformatics	3
contact_map	3
dee	3
multiscale	3
non_bonded_list	3
protein_design	3
refinement	3
residue-conservation	3
tomography	3
ann	2
cabs	2
domain-parsing	2
domain_swapping	2
folding_mechanism	2
gene-ontology	2
graph_theory	2
molecule_mining	2
percolation	2
structure-similarity	2
substitution_matrix	2
text_mining	2
torsion_angles	2
transmembrane	2
unfolded_state	2
calorimetry	1
computing	1
cryo-em	1
drug-discovery	1
loop_modeling	1
nanomedicine	1
svm	1
validation	1
visualization	1

dgront's library 520 articles Export

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