diamantis's protein-protein [41 articles] Export

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	Tissue specificity and the human protein interaction network. [My Copy] Molecular systems biology, Vol. 5 (7 April 2009) by Alice Bossi, Ben Lehner posted to interaction-network protein-protein by diamantis on 2009-05-19 01:22:31 as along with 13 people jfr dolchan balicea poirel tmmurali phoenixzxl coela frohike Kubke renatomilani TRHvidsten grahamc sjung
	Human Protein Reference Database--2009 update. [My Copy] Nucleic acids research, Vol. 37, No. Database issue. (6 January 2009), gkn892. by T. S. Keshava Prasad, Renu Goel, Kumaran Kandasamy, et al.Shivakumar Keerthikumar, Sameer Kumar, Suresh Mathivanan, Deepthi Telikicherla, Rajesh Raju, Beema Shafreen, Abhilash Venugopal, Lavanya Balakrishnan, Arivusudar Marimuthu, Sutopa Banerjee, Devi S. Somanathan, Aimy Sebastian, Sandhya Rani, Somak Ray, C. J. Harrys Kishore, Sashi Kanth, Mukhtar Ahmed, Manoj K. Kashyap, Riaz Mohmood, Y. L. Ramachandra, V. Krishna, B. Abdul Rahiman, Sujatha Mohan, Prathibha Ranganathan, Subhashri Ramabadran, Raghothama Chaerkady, Akhilesh Pandey posted to bioinformatics database homo protein-protein protein_resource by diamantis on 2009-03-19 18:01:15 as along with 7 people shikin marti swp09 ipark-kaist sjcockell mpitman renatomilani
	A survey of available tools and web servers for analysis of protein-protein interactions and interfaces [My Copy] Brief Bioinform, Vol. 10, No. 3. (1 May 2009), pp. 217-232. by Nurcan Tuncbag, Gozde Kar, Ozlem Keskin, Attila Gursoy, Ruth Nussinov posted to bioinformatics interactions interface protein-protein review by diamantis on 2009-03-18 17:27:05 as along with 12 people and 3 groups dfdong jinghu_fandm daforerog qluo SaraNasser mikaellund reyez apaydin barry semin renatomilani svozil structural_bioinformatics McCammon Bioinformatics
	DroID: the Drosophila Interactions Database, a comprehensive resource for annotated gene and protein interactions [My Copy] BMC Genomics, Vol. 9, No. 1. (07 October 2008), 461. by Jingkai Yu, Svetlana Pacifico, Guozhen Liu, Russell Finley posted to database drosophila gene_ineractions interactions protein-protein by diamantis on 2009-03-18 17:15:36 as along with 5 people cmor carlk guhjy pengchy zhqiang
	Protein interaction databases. [My Copy] Curr Opin Biotechnol, Vol. 12, No. 4. (August 2001), pp. 334-339. by I. Xenarios, D. Eisenberg posted to database interactions protein-protein by diamantis on 2009-03-18 06:51:41 as along with 2 people fisherp maralena
	Specificity in protein interactions and its relationship with sequence diversity and coevolution [My Copy] Proceedings of the National Academy of Sciences, Vol. 104, No. 19. (8 May 2007), pp. 7999-8004. by Luke Hakes, Simon C. Lovell, Stephen G. Oliver, David L. Robertson posted to coevolution interaction-network interactions protein-protein specificity by diamantis on 2009-03-06 22:52:41 as along with 14 people and 2 groups mgomes chica dullhunk marti stevanspringer bjorns cjeans zwang Garamonfok cursonivel1 tale winterschlaefer phoenixzxl chrys FAB-lab cursonivel1
	Positive selection at the protein network periphery: Evaluation in terms of structural constraints and cellular context [My Copy] Proceedings of the National Academy of Sciences, Vol. 104, No. 51. (18 December 2007), pp. 20274-20279. by Philip M. Kim, Jan O. Korbel, Mark B. Gerstein posted to interaction-network interactions networks positive_selection protein-protein structural_constraints by diamantis on 2009-02-21 07:59:23 as along with 11 people lptolik daveGerrard Garamonfok renewang guhjy tmmurali grahamc cjeans mingzhi minostro wilbur
	Unraveling Protein Networks with Power Graph Analysis [My Copy] PLoS Comput Biol, Vol. 4, No. 7. (11 July 2008), e1000108. by Loïc Royer, Matthias Reimann, Bill Andreopoulos, Michael Schroeder posted to algorithm interaction-network interactions networks protein-protein by diamantis on 2009-02-19 23:05:57 as along with 24 people and 2 groups colmryan carlk saket yyby jfr jiny aramesh2 AbnerCYH jmuhlich MatthiasReimann royerloic Ema lptolik kengg roys reyez tmmurali nuin Borelli askrajiv renatomilani stajich sebk rsantana Mycology OPIG
	An in silico method for detecting overlapping functional modules from composite biological networks [My Copy] BMC Systems Biology, Vol. 2, No. 1. (2008) by Ioannis Maraziotis, Konstantina Dimitrakopoulou, Anastasios Bezerianos posted to algorithm clustering expression interaction-network interactions newtorks protein-protein by diamantis on 2009-02-19 22:56:24 as along with 7 people dolchan jfr imina saket renatomilani lptolik jonesn
	Modifying the DPClus algorithm for identifying protein complexes based on new topological structures [My Copy] BMC Bioinformatics, Vol. 9, No. 1. (2008) by Min Li, Jianer Chen, Jianxin Wang, Bin Hu, Gang Chen posted to algorithm clustering interaction-network interactions networks protein-protein by diamantis on 2009-02-19 22:20:43 as along with 2 people chad_davis neils
	IntAct: an open source molecular interaction database. [My Copy] Nucleic Acids Res, Vol. 32, No. Database issue. (1 January 2004) by H. Hermjakob, L. Montecchi-Palazzi, C. Lewington, et al.S. Mudali, S. Kerrien, S. Orchard, M. Vingron, B. Roechert, P. Roepstorff, A. Valencia, H. Margalit, J. Armstrong, A. Bairoch, G. Cesareni, D. Sherman, R. Apweiler posted to database interaction-network protein-protein by diamantis on 2009-01-26 23:29:34 as along with 9 people and 1 group egonw irenas fisherp frohike grahamc lpfernandes wilbur jeremymiller satre dbk-lab
	IntAct--open source resource for molecular interaction data. [My Copy] Nucleic acids research, Vol. 35, No. Database issue. (12 January 2007), pp. D561-565. by Kerrien, S., Alam-Faruque, et al.Y., Aranda, B., Bancarz, I., Bridge, A., Derow, C., Dimmer, E., Feuermann, M., Friedrichsen, A., Huntley, R., Kohler, C., Khadake, J., Leroy, C., Liban, A., Lieftink, C., Montecchi-Palazzi, L., Orchard, S., Risse, J., Robbe, K., Roechert, B., Thorneycroft, D., Zhang, Y., Apweiler, R., Hermjakob, H. posted to database interaction-network protein-protein by diamantis on 2009-01-26 23:26:43 as along with 11 people and 3 groups dullhunk jperkins chica robert85 mbehbah1 guhjy chad_davis joergkurtwegner lpfernandes carlk bicko Molecular-Modelling Drug-Design Cheminformatics
	Identifying functional modules in protein-protein interaction networks: an integrated exact approach [My Copy] Bioinformatics, Vol. 24, No. 13. (1 July 2008), pp. i223-231. by Marcus T. Dittrich, Gunnar W. Klau, Andreas Rosenwald, Thomas Dandekar, Tobias Muller posted to algorithm expression genome interaction-network interactions modularity protein-protein statistics by diamantis on 2009-01-09 20:50:04 as along with 8 people carlk babakap jfr guhjy marck renatomilani tmmurali dragonrez
	An Exponential Core in the Heart of the Yeast Protein Interaction Network [My Copy] Molecular Biology and Evolution, Vol. 22, No. 3. (March 2005), pp. 421-425. by Jose B. Pereira-Leal, Benjamin Audit, Jose M. Peregrin-Alvarez, Christos A. Ouzounis posted to gene genome interaction-network interactions mechanism networks power-law protein-protein scale-free by diamantis on 2008-11-01 00:16:26 as along with 2 people and 1 group wilbur lfriedl kdl
	Evolution of the yeast protein interaction network [My Copy] Proceedings of the National Academy of Sciences, Vol. 100, No. 22. (28 October 2003), pp. 12820-12824. by Hong Qin, Henry H. Lu, Wei B. Wu, Wen-Hsiung Li posted to eukaryots evolution gene genome interaction-network interactions mechanism power-law protein-protein scale-free yeast by diamantis on 2008-11-01 00:13:52 as along with 2 people davidecellai friendpine
	Preferential Attachment in the Protein Network Evolution [My Copy] Physical Review Letters, Vol. 91, No. 13. (2003), 138701. by Eli Eisenberg, Erez Y. Levanon posted to gene genome interaction-network interactions mechanism power-law protein-protein scale-free by diamantis on 2008-11-01 00:11:45 as
	Effect of sampling on topology predictions of protein-protein interaction networks. [My Copy] Nature biotechnology, Vol. 23, No. 7. (07 July 2005), pp. 839-844. by Jing-Dong D. Han, Denis Dupuy, Nicolas Bertin, Michael E. Cusick, Marc Vidal posted to genome interaction-network molecular networks power-law protein-protein scale-free scaling by diamantis on 2008-10-31 20:31:49 as along with 15 people wiedenhoeft csanford cerca snuppepuppan kuhn rabbat gurkanbebek koller eukfn mikaelhuss grahamc cjeans iris_2001 paolomarcatili carlk
	Evolutionary rate depends on number of protein-protein interactions independently of gene expression level. [My Copy] BMC Evol Biol, Vol. 4, No. 1. (27 May 2004) by H. B. Fraser, A. E. Hirsh posted to expression genome interaction-network interactions protein-protein by diamantis on 2008-10-29 00:12:40 as along with 1 person bjorns
	Evolutionary rate depends on number of protein-protein interactions independently of gene expression level: response. [My Copy] BMC Evol Biol, Vol. 4 (1 June 2004) by J. D. Bloom, C. Adami posted to expression genome interaction-network interactions protein-protein by diamantis on 2008-10-29 00:11:53 as along with 1 person bjorns
	Unequal evolutionary conservation of human protein interactions in interologous networks. [My Copy] Genome biology, Vol. 8, No. 5. (29 May 2007), R95. by Kevin R. Brown, Igor Jurisica posted to database genome htp interaction-network interactions protein-protein by diamantis on 2008-10-29 00:05:48 as along with 6 people chica saket cerca grahamc zwang winterschlaefer
	Online Predicted Human Interaction Database [My Copy] Bioinformatics, Vol. 21, No. 9. (1 May 2005), pp. 2076-2082. by Kevin R. Brown, Igor Jurisica posted to database genome htp interaction-network interactions protein-protein by diamantis on 2008-10-29 00:04:55 as along with 4 people guhjy lawraga frohike cerca
	Evolutionary and Physiological Importance of Hub Proteins [My Copy] PLoS Computational Biology, Vol. 2, No. 7. (1 July 2006), e88. by Nizar N. Batada, Laurence D. Hurst, Mike Tyers posted to centrality comparative evolution genes genome interaction-network interactions lethality protein-protein by diamantis on 2008-10-28 18:10:38 as along with 8 people lptolik davidecellai phoenixzxl aswin IbnBio lpfernandes Evangelia Ema
	Network biology: understanding the cell's functional organization [My Copy] Nature Reviews Genetics, Vol. 5, No. 2. (01 February 2004), pp. 101-113. by Albert-Laszlo Barabasi, Zoltan N. Oltvai posted to evolution genes genome interaction-network interactions modularity networks power-law protein-protein scale-free scaling by diamantis on 2008-10-28 17:58:55 as along with 26 people and 1 group ess30 poirel tonamswish asadrahman tmarscha cn_honjyo behindtherabbit yangjustinc lawraga sschurer hadesnumb cswinburne babakap carlk pkm daforerog okarsligil bayesian tny mmt grahamc mirzazadeh lpfernandes karfunkel vietanh0 nolodie Bioinformatics
	Rate of protein evolution versus fitness effect of gene deletion. [My Copy] Mol Biol Evol, Vol. 20, No. 5. (May 2003), pp. 772-774. by J. Yang, Z. Gu, W. H. Li posted to evolution expression genome interaction-network interactions protein-protein by diamantis on 2008-10-28 17:54:51 as along with 2 people and 1 group bjorns penka Nie
	Genomic function: Rate of evolution and gene dispensability. [My Copy] Nature, Vol. 421, No. 6922. (30 January 2003) by C. Pál, B. Papp, L. D. Hurst posted to evolution expression interaction-network interactions protein-protein rate by diamantis on 2008-10-28 17:51:41 as along with 1 person bjorns
	Apparent dependence of protein evolutionary rate on number of interactions is linked to biases in protein-protein interactions data sets. [My Copy] BMC Evol Biol, Vol. 3 (2 October 2003) by J. D. Bloom, C. Adami posted to expression genome interaction-network interactions protein-protein rate by diamantis on 2008-10-28 17:48:12 as along with 4 people and 1 group bjorns balajis penka rsantana Nie
	Gene Loss, Protein Sequence Divergence, Gene Dispensability, Expression Level, and Interactivity Are Correlated in Eukaryotic Evolution -- Krylov et al. 13 (10): 2229 -- Genome Research [My Copy] Genome Research, Vol. 13 (2003), pp. 2229-2235. by Dmitri M. Krylov, Yuri I. Wolf, Igor B. Rogozin, Eugene V. Koonin posted to dispensability divergence eukaryots expression gene genome interaction-network interactions interactivity loss protein-protein by diamantis on 2008-10-28 17:44:52 as
	Structure and evolution of protein interaction networks: a statistical model for link dynamics and gene duplications [My Copy] BMC Evolutionary Biology, Vol. 4, No. 1. (27 November 2004), 51. by Johannes Berg, Michael Lassig, Andreas Wagner posted to genome interaction-network interactions mechanism networks protein-protein by diamantis on 2008-10-28 17:34:58 as along with 8 people saket sergiun chica kaarsinogen phoenixzxl j3xucite timflutre iris_2001
	Evolutionary conservation of motif constituents in the yeast protein interaction network. [My Copy] Nat Genet, Vol. 35, No. 2. (October 2003), pp. 176-179. by S. Wuchty, Z. N. Oltvai, A. L. Barabási posted to consercation interaction-network interactions protein-protein selection yeast by diamantis on 2008-10-28 17:30:42 as along with 3 people shivaram lyongu niallhaslam
	A Protein Interaction Map of Drosophila melanogaster [My Copy] Science, Vol. 302, No. 5651. (5 December 2003), pp. 1727-1736. by L. Giot, J. S. Bader, C. Brouwer, et al.A. Chaudhuri, B. Kuang, Y. Li, Y. L. Hao, C. E. Ooi, B. Godwin, E. Vitols, G. Vijayadamodar, P. Pochart, H. Machineni, M. Welsh, Y. Kong, B. Zerhusen, R. Malcolm, Z. Varrone, A. Collis, M. Minto, S. Burgess, L. McDaniel, E. Stimpson, F. Spriggs, J. Williams, K. Neurath, N. Ioime, M. Agee, E. Voss, K. Furtak, R. Renzulli, N. Aanensen, S. Carrolla, E. Bickelhaupt, Y. Lazovatsky, A. DaSilva, J. Zhong, C. A. Stanyon, R. L. Finley, K. P. White, M. Braverman, T. Jarvie, S. Gold, M. Leach, J. Knight, R. A. Shimkets, M. P. McKenna, J. Chant, J. M. Rothberg posted to drosophila interaction-network interactions melanogaster modularity protein-protein by diamantis on 2008-10-28 17:26:27 as along with 18 people and 2 groups rabio nitxin mgomes semin dragonrez shivaram lfriedl nuke2005 lyongu sesejun maryee xico memming eukfn csanford antonkratz carlk cerca kdl WetBiology
	Modular organization of cellular networks [My Copy] Proceedings of the National Academy of Sciences, Vol. 100, No. 3. (4 February 2003), pp. 1128-1133. by Alexander W. Rives, Timothy Galitski posted to genome interaction-network interactions modularity protein-protein by diamantis on 2008-10-28 17:21:32 as along with 9 people lawraga ycho0610 jiny karfunkel Evangelia stefanoallesina ellakat carlk roys
	Evidence for dynamically organized modularity in the yeast protein\|[ndash]\|protein interaction network [My Copy] Nature, Vol. 430, No. 6995. (09 June 2004), pp. 88-93. by Jing-Dong J. Han, Nicolas Bertin, Tong Hao, et al.Debra S. Goldberg, Gabriel F. Berriz, Lan V. Zhang, Denis Dupuy, Albertha J. M. Walhout, Michael E. Cusick, Frederick P. Roth, Marc Vidal posted to genes genome interaction-network interactions modularity protein-protein yeast by diamantis on 2008-10-28 17:19:55 as along with 31 people and 2 groups aceol daveGerrard colmryan mgomes saket lawraga davidecellai dragonrez lfriedl balajis yoh j3xucite kintoki koller mikaelhuss ruvido gcalda grahamc iris_2001 lpfernandes winterschlaefer Evangelia cdeane shung phoenixzxl stefanoallesina ellakat frohike shikin ksiek carlk kdl GeneGo
	The small world inside large metabolic networks. [My Copy] Proceedings. Biological sciences / The Royal Society, Vol. 268, No. 1478. (7 September 2001), pp. 1803-1810. by A. Wagner, D. A. Fell posted to connectivity evolution interaction-network interactions networks protein-protein rate selection by diamantis on 2008-10-28 17:16:50 as along with 9 people and 1 group eehsanipour tomhebbron schwartzjmc mague yoh Evangelia athleem pmendes mdstobbe JJJ
	Molecular evolution in large genetic networks: does connectivity equal constraint? [My Copy] Journal of molecular evolution, Vol. 58, No. 2. (February 2004), pp. 203-211. by M. W. Hahn, G. C. Conant, A. Wagner posted to connectivity constraint evolution genes genome interaction-network interactions protein-protein rate selection by diamantis on 2008-10-28 17:13:58 as along with 3 people and 1 group chica penka cjeans Nie
	Global network analysis of phenotypic effects: protein networks and toxicity modulation in Saccharomyces cerevisiae. [My Copy] Proc Natl Acad Sci U S A, Vol. 101, No. 52. (28 December 2004), pp. 18006-18011. by M. R. Said, T. J. Begley, A. V. Oppenheim, D. A. Lauffenburger, L. D. Samson posted to centrality genes genome interaction-network interactions networks protein-protein toxicity by diamantis on 2008-10-28 17:09:36 as along with 2 people and 1 group opheliav cdppublications CDP
	Emergence of Scaling in Random Networks [My Copy] Science, Vol. 286, No. 5439. (15 October 1999), pp. 509-512. by Albert-László Barabási, Réka Albert posted to networks protein-protein random scale-free scaling by diamantis on 2008-10-28 16:58:22 as along with 51 people asangansi tonyony tessonec leonglester aniakovas nlimam acrmartins bivas makukha melo_mcr thepogoman vmarceau mfuhr tomhebbron eitanla1 voiklis jb44 kinop panisson anphony Adso mattjb phoenixzxl sWorgan czeller alanyang kaarsinogen pgastrein nolodie qwermish dragonrez shivaram tolosoft balicea ddahlem merazzle Borelli muraken lshaw gurkanbebek jaspervoskuilen rcrane ransombriggs idreams2 nkishan justforscraps Evangelia kb Diego_Prada subhacom ethkim
	Asymmetric Functional Divergence of Duplicate Genes in Yeast [My Copy] Mol Biol Evol, Vol. 19, No. 10. (1 October 2002), pp. 1760-1768. by Andreas Wagner posted to duplications genes genome interaction-network interactions networks protein-protein by diamantis on 2008-10-28 16:52:43 as
	Lethality and centrality in protein networks [My Copy] Nature, Vol. 411, No. 6833. (03 May 2001), pp. 41-42. by H. Jeong, S. P. Mason, A. L. Barabasi, Z. N. Oltvai posted to centrality genes interaction-network interactions lethality protein-protein by diamantis on 2008-10-28 16:47:27 as along with 24 people and 2 groups pablocarb feshbach mgomes lawraga deanmalmgren jmenche muraken davidecellai dylanwalker jiny kuhn cmmorel nickluscombe gurkanbebek jeremymiller timflutre ruvido gcalda grahamc lpfernandes Evangelia iris_2001 cerca ethkim EBI-regulation GeschwindLab
	Using protein complexes to predict phenotypic effects of gene mutation [My Copy] Genome Biology, Vol. 8, No. 11. (27 November 2007), R252. by Hunter Fraser, Joshua Plotkin posted to disease interaction-network interactions prediction protein-protein by diamantis on 2008-10-28 16:41:00 as along with 8 people biomcgary carlk saket winterschlaefer grahamc ramensky jiny bpcusack
	Discovering disease-genes by topological features in human proteinprotein interaction network [My Copy] Bioinformatics, Vol. 22, No. 22. (15 November 2006), pp. 2800-2805. by Xu, Jianzhen, Li, Yongjin posted to disease interaction-network interactions prediction protein-protein by diamantis on 2008-10-28 16:39:12 as along with 4 people and 2 groups saket marcius skhadar ealloza BioinfoCIPF SGU-CIPF
	Predicting disease genes using protein-protein interactions. [My Copy] Journal of medical genetics, Vol. 43, No. 8. (August 2006), pp. 691-698. by M. Oti, B. Snel, M. A. Huynen, H. G. Brunner posted to disease genes interaction-network interactions prediction protein-protein by diamantis on 2008-10-28 16:35:30 as along with 8 people daforerog saket winterschlaefer bicko jiny svdate xingxu balicea

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interaction-network	48
genome	47
interactions	44
protein-protein	41
networks	35
evolution	27
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