dimka's mmult-ref [60 articles] Export

Recent papers added to dimka's library classified by the tag mmult-ref. You can also see everyone's mmult-ref.

	MISTRIAL - MassIve STRucture ALignment [My Copy] by Matthias Maneck, Gerard J. Kleywegt, Knut Reinert posted to mmult-ref by dimka on 2009-11-18 20:20:47 as
	The Laminin-Binding Protein Lbp from Streptococcus pyogenes Is a Zinc Receptor [My Copy] J. Bacteriol., Vol. 191, No. 18. (15 September 2009), pp. 5814-5823. by Christian Linke, Tom T. Caradoc-Davies, Paul G. Young, Thomas Proft, Edward N. Baker posted to mmult-ref by dimka on 2009-09-29 07:30:59 as
	MISTRAL - MassIve STRucture ALignment [My Copy] (2006) by Matthias Maneck edited by Gerard J. Kleywegt, Knut Reinert posted to mmult-ref by dimka on 2009-09-29 07:27:45 as
	Structural Information and Hidden Markov Models for Biological Sequence Analysis [My Copy] (2008) by Jeanette Tangrot posted to mmult-ref by dimka on 2009-09-29 07:24:29 as
	Multiple Structural Alignment for Proteins [My Copy] (May 2008) by Siu W. Yan posted to mmult-ref by dimka on 2009-09-29 07:15:23 as
	The crystal structure of the Escherichia coli autoinducer-2 processing protein LsrF. [My Copy] PloS one, Vol. 4, No. 8. (2009) by Zamia Diaz, Karina B. Xavier, Stephen T. Miller posted to mmult-ref by dimka on 2009-09-29 07:13:21 as along with 1 person Winzer
	Searching for Similar Binding Sites [My Copy] (2009) by Anders Thøgersen edited by Maria T. Pisabarro posted to mmult-ref by dimka on 2009-09-29 07:07:34 as
	Structural Bioinformatics (Methods of Biochemical Analysis) [My Copy] (16 March 2009) by Marc A. Marti-Renom, Emidio Capriotti, Ilya N. Shindyalov, Philip E. Bourne edited by Philip E. Bourne posted to mmult-ref by dimka on 2009-09-29 06:58:00 as
	Protein Sequence and Structure Comparison based on Vectorial Representations [My Copy] (2009) by Florian Teichert edited by Markus Porto, Barbara Drossel posted to mmult-ref by dimka on 2009-09-29 06:51:49 as
	Defining and Computing Optimum RMSD for Gapped and Weighted Multiple-Structure Alignment [My Copy] IEEE/ACM Trans. Comput. Biol. Bioinformatics, Vol. 5, No. 4. (2008), pp. 525-533. by Xueyi Wang, Jack Snoeyink posted to mmult-ref by dimka on 2009-09-29 06:40:00 as
	CAPRI- Content-based Analysis of Protein Structure for Retrieval and Indexing [My Copy] by Eric Paquet, Herna L. Viktor posted to mmult-ref by dimka on 2009-09-29 06:38:15 as
	Multiple alignment of contact maps [My Copy] Neural Networks, IEEE - INNS - ENNS International Joint Conference on, Vol. 0 (2009), pp. 1401-1406. by Brijnesh J. Jain, Henning Stehr, Michael Lappe, Klaus Obermayer posted to mmult-ref by dimka on 2009-09-29 06:24:28 as
	A correspondence between solution-state dynamics of an individual protein and the sequence and conformational diversity of its family. [My Copy] PLoS computational biology, Vol. 5, No. 5. (29 May 2009), e1000393. by Gregory D. Friedland, Nils-Alexander A. Lakomek, Christian Griesinger, Jens Meiler, Tanja Kortemme posted to mmult-ref by dimka on 2009-07-28 06:53:29 as along with 1 person tcschen
	Human Mitochondrial Thymidine Kinase Is Selectively Inhibited by 3'-Thiourea Derivatives of beta-Thymidine: Identification of Residues Crucial for Both Inhibition and Catalytic Activity [My Copy] Mol Pharmacol, Vol. 75, No. 5. (1 May 2009), pp. 1127-1136. by Jan Balzarini, Ineke Van Daele, Ana Negri, et al.Nicola Solaroli, Anna Karlsson, Sandra Liekens, Federico Gago, Serge Van Calenbergh posted to mmult-ref by dimka on 2009-07-28 06:47:31 as
	Comparison of DNA binding across protein superfamilies [My Copy] Proteins: Structure, Function, and Bioinformatics, Vol. 9999, No. 9999. (2009), NA. by Bruno Contreras-Moreira, Javier Sancho, Vladimir E. Angarica posted to mmult-ref by dimka on 2009-07-28 06:45:38 as along with 1 person aalibes
	Psalmotoxin-1 Docking to Human Acid-sensing Ion Channel-1 [My Copy] J. Biol. Chem., Vol. 284, No. 26. (26 June 2009), pp. 17625-17633. by Yawar J. Qadri, Bakhrom K. Berdiev, Yuhua Song, Howard L. Lippton, Catherine M. Fuller, Dale J. Benos posted to mmult-ref by dimka on 2009-07-28 06:40:40 as
	Alignment of multiple protein structures based on sequence and structure features. [My Copy] Protein engineering, design & selection : PEDS, Vol. 22, No. 9. (1 September 2009), pp. 569-574. by M. S. Madhusudhan, Benjamin M. Webb, Marc A. Marti-Renom, Narayanan Eswar, Andrej Sali posted to mmult-ref by dimka on 2009-07-15 17:31:01 as along with 1 person nickolay
	Cross-over between discrete and continuous protein structure space: insights into automatic classification and networks of protein structures. [My Copy] PLoS computational biology, Vol. 5, No. 3. (27 March 2009), e1000331. by Alberto Pascual-García, David Abia, Ángel R. Ortiz, Ugo Bastolla posted to mmult-ref by dimka on 2009-05-06 20:37:26 as along with 3 people TRHvidsten yuslinaz idoerg
	Crystal structure of PAE0151 from Pyrobaculum aerophilum, a PIN-domain (VapC) protein from a toxin-antitoxin operon [My Copy] Proteins: Structure, Function, and Bioinformatics, Vol. 72, No. 1. (July 2008), pp. 510-518. by Richard D. Bunker, Joanna L. Mckenzie, Edward N. Baker, Vickery L. Arcus posted to mmult-ref by dimka on 2009-03-03 07:37:52 as along with 1 person neils
	Continuous optimization methods for structure alignments [My Copy] Mathematical Programming, Vol. 112, No. 1. (20 March 2008), pp. 93-124. by Roberto Andreani, José Martínez, Leandro Martínez, Flávio Yano posted to mmult-ref by dimka on 2009-02-11 06:58:49 as
	The meaning of alignment: lessons from structural diversity [My Copy] BMC Bioinformatics, Vol. 9, No. 1. (2008) by Walter Pirovano, Anton K. Feenstra, Jaap Heringa posted to mmult-ref by dimka on 2009-02-11 06:50:35 as along with 13 people pimmy swtimmer mhamada reyez treangen markusd j3xucite nuin kshameer druvus chad_davis taguchi pansapiens
	The molecular analysis of Trypanosoma cruzi metallocarboxypeptidase 1 provides insight into fold and substrate specificity [My Copy] Molecular Microbiology, Vol. 70, No. 4. (November 2008), pp. 853-866. by Niemirowicz, Gabriela, Fernandez, et al. Daniel, Sola, Maria, Cazzulo, J. Juan, Aviles, X. Francesc, Gomis-Ruth, F. Xavier posted to mmult-ref by dimka on 2009-02-11 06:41:33 as
	Identification of the Active Site of DS-epimerase 1 and Requirement of N-Glycosylation for Enzyme Function [My Copy] J. Biol. Chem., Vol. 284, No. 3. (16 January 2009), pp. 1741-1747. by Benny Pacheco, Marco Maccarana, David R. Goodlett, Anders Malmstrom, Lars Malmstrom posted to mmult-ref by dimka on 2009-01-15 16:58:51 as
	Structure and mechanism of metallocarboxypeptidases. [My Copy] Critical reviews in biochemistry and molecular biology, Vol. 43, No. 5. (t 2008), pp. 319-345. by F. X. Gomis-Rüth posted to mmult-ref by dimka on 2008-12-29 22:19:46 as
	An enhanced partial order curve comparison algorithm and its application to analyzing protein folding trajectories [My Copy] BMC Bioinformatics, Vol. 9 (18 August 2008), 344. by Hong Sun, Hakan Ferhatosmanoglu, Motonori Ota, Yusu Wang posted to mmult-ref by dimka on 2008-12-01 18:59:49 as
	Alignment of protein structures in the presence of domain motions [My Copy] BMC Bioinformatics, Vol. 9, No. 1. (2008) by Roberto Mosca, Barbara Brannetti, Thomas Schneider posted to mmult-ref structure by dimka on 2008-10-21 19:13:21 as along with 4 people viktor21614 neils reyez vinithepooh
	The Use of a Conformational Alphabet for Fast Alignment of Protein Structures [My Copy] Bioinformatics Research and Applications (2008), pp. 331-342. by Wei-Mou Zheng posted to mmult-ref by dimka on 2008-09-18 17:02:29 as
	Structural Insight into Epitopes in the Pregnancy-Associated Malaria Protein VAR2CSA [My Copy] PLoS Pathog, Vol. 4, No. 2. (15 February 2008), e42. by Pernille Andersen, Morten A. Nielsen, Mafalda Resende, et al.Thomas S. Rask, Madeleine Dahlbäck, Thor Theander, Ole Lund, Ali Salanti posted to mmult-ref by dimka on 2008-09-18 16:57:21 as
	A molecular dynamics approach to study the importance of solvent in protein interactions [My Copy] Proteins: Structure, Function, and Bioinformatics, Vol. 73, No. 2. (1 November 2008), pp. 515-525. by Sergey Samsonov, Joan Teyra, Teresa M. Pisabarro posted to mmult-ref by dimka on 2008-08-27 14:20:30 as along with 2 people jteyra Lombardo_7
	Local interactions in protein folding determined through an inverse folding model. [My Copy] Proteins, Vol. 71, No. 1. (April 2008), pp. 278-299. by U. Bastolla, M. Porto, A. R. Ortíz posted to mmult-ref by dimka on 2008-08-25 21:52:26 as
	Structural Information and Hidden Markov Models for Biological Sequence Analysis [My Copy] by Jeanette Tangrot posted to mmult-ref by dimka on 2008-08-18 22:03:24 as
	Structural Insight into Epitopes in the Pregnancy-Associated Malaria Protein VAR2CSA [My Copy] PLoS Pathog, Vol. 4, No. 2. (2008) by Pernille Andersen, Morten A. Nielsen, Mafalda Resende, et al.Thomas S. Rask, Madeleine Dahlbäck, Thor Theander, Ole Lund, Ali Salanti posted to mmult-ref by dimka on 2008-05-29 20:16:55 as
	RAPIDO: a web server for the alignment of protein structures in the presence of conformational changes [My Copy] Nucl. Acids Res. (6 May 2008), gkn197. by Roberto Mosca, Thomas R. Schneider posted to mmult-ref by dimka on 2008-05-07 19:42:39 as
	Enhanced partial order curve comparison over multiple protein folding trajectories. [My Copy] Computational systems bioinformatics / Life Sciences Society. Computational Systems Bioinformatics Conference, Vol. 6 (2007), pp. 299-310. by H. Sun, H. Ferhatosmanoglu, M. Ota, Y. Wang posted to mmult-ref by dimka on 2008-04-30 04:59:28 as
	Вероятностный метод предсказания трансмембранных участков по множественному выравниванию аминокислотных последовательностей [My Copy] Молекулярная Биология, Vol. 40, No. 3. (25 January 2006), pp. 541-545. by Сутормин, Миронов posted to mmult-ref by dimka on 2008-04-21 21:50:05 as
	An efficient conformational sampling method for homology modeling. [My Copy] Proteins, Vol. 71, No. 1. (11 October 2007), pp. 175-188. by Rongsheng Han, Alejandra Leo-Macias, Daniel Zerbino, Ugo Bastolla, Bruno Contreras-Moreira, Angel R. Ortiz posted to mmult-ref by dimka on 2008-04-21 21:30:45 as along with 3 people insectopalo cdeane sebk
	SCOWLP classification: Structural comparison and analysis of protein binding regions [My Copy] BMC Bioinformatics, Vol. 9 (08 January 2008), 9. by Joan Teyra, Maciej Paszkowski-Rogacz, Gerd Anders, Teresa M. Pisabarro posted to mmult-ref by dimka on 2008-03-24 18:45:37 as along with 7 people higueruelo bicko chad_davis carlk jteyra paszkows Lombardo_7
	Preservation of protein clefts in comparative models [My Copy] BMC Structural Biology, Vol. 8, No. 2. (16 January 2008), pp. 1-16. by David Piedra, Sergi Lois, Xavier posted to mmult-ref by dimka on 2008-01-30 05:38:49 as along with 1 person biehl
	Overcoming the Inadequacies or Limitations of Experimental Structures as Drug Targets by Using Computational Modeling Tools and Molecular Dynamics Simulations [My Copy] ChemMedChem, Vol. 2, No. 10. (2007), pp. 1388-1401. by Esther Marco, Federico Gago posted to mmult-ref by dimka on 2007-11-28 05:49:50 as along with 1 person higueruelo
	SABERTOOTH: protein structural alignment based on a vectorial structure representation [My Copy] BMC Bioinformatics, Vol. 8 (31 October 2007), 425. by Florian Teichert, Ugo Bastolla, Markus Porto posted to mmult-ref by dimka on 2007-11-28 05:32:24 as
	CLEMAPS: Multiple alignment of protein structures based on conformational letters. [My Copy] Proteins, Vol. 71, No. 2. (1 May 2007), pp. 728-736. by Xin Liu, Ya-Pu P. Zhao, Wei-Mou M. Zheng posted to mmult-ref by dimka on 2007-11-10 01:28:12 as
	N1-Substituted Thymine Derivatives as Mitochondrial Thymidine Kinase (TK-2) Inhibitors [My Copy] J. Med. Chem., Vol. 49, No. 26. (28 December 2006), pp. 7766-7773. by A. I. Hernandez, O. Familiar, A. Negri, et al.F. Rodriguez-Barrios, F. Gago, A. Karlsson, M. J. Camarasa, J. Balzarini, M. J. Perez-Perez posted to mmult-ref by dimka on 2007-11-07 05:06:49 as
	CAPRI- Content-based Analysis of Protein Structure for Retrieval and Indexing [My Copy] Journal of Bioinformatics and Computational Biology (2007) by Eric Paquet, Herna Viktor posted to mmult-ref by dimka on 2007-10-11 06:56:27 as
	Three-dimensional structure and ligand binding properties of trichosurin, a metatherian lipocalin from the milk whey of the common brushtail possum Trichosurus vulpecula. [My Copy] The Biochemical journal, Vol. 408, No. 1. (15 November 2007), pp. 29-38. by R. P. Watson, J. Demmer, E. N. Baker, V. L. Arcus posted to mmult-ref by dimka on 2007-10-11 06:42:22 as along with 1 person flbarroso
	Recent Progress in Measuring Structural Similarity Between Proteins [My Copy] Current Protein and Peptide Science, Vol. 8, No. 3. (June 2007), pp. 219-241. by Carugo, Oliviero posted to mmult-ref by dimka on 2007-10-11 06:39:32 as
	Solution structure of the hypothetical protein TA0095 from Thermoplasma acidophilum: A novel superfamily with a two-layer sandwich architecture. [My Copy] Protein Sci, Vol. 16, No. 10. (October 2007), pp. 2278-2286. by E. León, A. Yee, A. R. Ortíz, J. Santoro, M. Rico, M. A. Jiménez posted to mmult-ref by dimka on 2007-09-27 23:17:48 as
	Multiple structure alignment by optimal RMSD implies that the average structure is a consensus. [My Copy] Comput Syst Bioinformatics Conf (2006), pp. 79-87. by X. Wang, J. Snoeyink posted to mmult-ref by dimka on 2007-06-28 19:21:14 as
	3dLOGO: a web server for the identification, analysis and use of conserved protein substructures [My Copy] Nucl. Acids Res., Vol. 35 (8 May 2007) by Allegra Via, Daniele Peluso, Pier F. Gherardini, et al.Emanuele de Rinaldis, Teresa Colombo, Gabriele Ausiello, Manuela H. Citterich posted to mmult-ref by dimka on 2007-05-09 22:22:35 as
	A study of structural properties on profiles HMMs [My Copy] (16 Apr 2007) by Juliana S. Bernardes, Alberto Davila, Vitor S. Costa, Gerson Zaverucha posted to mmult-ref by dimka on 2007-05-02 21:49:18 as
	Continuous Optimization Methods for Structure Alignments [My Copy] Mathematical Programming (2 May 2006) by R. Andreani, J. M. Martinez, L. Martinez, F. Yano posted to mmult-ref by dimka on 2007-04-25 06:38:09 as

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md	100
pip2	100
channel	85
structure	84
lipid	81
membrane	72
kir	61
protein	61
mmult-ref	60
gating	47
simulation	47
molecular	44
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review	37
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kir21	17
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inositol	15
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amp	13
domain	12
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kir11	12
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adenosine	11
analysis	11
cholesterol	11
crystallography	11
electrophysiology	11
gtp-binding	11
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triphosphate	11
dmpc	10
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girk	10
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kinetics	10
multiple	10
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cloning	1
close	1
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