dimka's protein [61 articles] Export

Recent papers added to dimka's library classified by the tag protein. You can also see everyone's protein.

	The effector domain of myristoylated alanine-rich C kinase substrate binds strongly to phosphatidylinositol 4,5-bisphosphate. [My Copy] The Journal of biological chemistry, Vol. 276, No. 7. (16 February 2001), pp. 5012-5019. by J. Wang, A. Arbuzova, G. Hangyás-Mihályné, S. McLaughlin posted to binding cations pip2 protein by dimka on 2008-12-18 06:39:59 as
	Outer membrane proteins: comparing X-ray and NMR structures by MD simulations in lipid bilayers [My Copy] European Biophysics Journal, Vol. 37, No. 2. (11 February 2008), pp. 131-141. by Katherine Cox, Peter Bond, Alessandro Grottesi, Marc Baaden, Mark Sansom posted to compare md membrane protein simulation by dimka on 2008-06-25 16:48:52 as
	Anisotropic network model: systematic evaluation and a new web interface [My Copy] Bioinformatics, Vol. 22, No. 21. (1 November 2006), pp. 2619-2627. by Eyal, Eran, Yang, Lee-Wei, Bahar, Ivet posted to elastic enm motion protein by dimka on 2008-06-10 19:49:58 as along with 1 person aqeel
	Analyzing phosphoinositides and their interacting proteins [My Copy] Nature Methods, Vol. 3, No. 4. (22 March 2006), pp. 251-258. by Tor E. Rusten, Harald Stenmark posted to phosphinositides pip2 protein synthesis by dimka on 2008-02-21 02:09:28 as
	ProtSqueeze: Simple and Effective Automated Tool for Setting up Membrane Protein Simulations. [My Copy] J Chem Inf Model (25 July 2007) by Semen O. Yesylevskyy posted to insert membrane protein protein-membrane software tool by dimka on 2007-07-27 16:57:17 as
	Mapping the Phosphoinositide-Binding Site on Chick Cofilin Explains How PIP2 Regulates the Cofilin-Actin Interaction [My Copy] Molecular Cell, Vol. 24, No. 4. (17 November 2006), pp. 511-522. by Vitaliy Y. Gorbatyuk, Neil J. Nosworthy, Scott A. Robson, et al.Naresh P. Bains, Mark W. Maciejewski, Dos, Glenn F. King posted to protein pip2 nmr isomer by dimka on 2007-02-02 00:57:26 as
	Coarse-grained molecular dynamics simulations of membrane proteins and peptides. [My Copy] J Struct Biol (20 October 2006) by Peter J J. Bond, John Holyoake, Anthony Ivetac, Syma Khalid, Mark S P S. Sansom posted to coarse-grain lipid membrane protein by dimka on 2006-11-28 20:20:31 as along with 4 people krapnik paulschlesinger choonpeng sunnytov
	The role of electrostatics in protein-membrane interactions [My Copy] Biochimica et Biophysica Acta (BBA) - Molecular and Cell Biology of Lipids In Lipid-Binding Domains, Vol. 1761, No. 8. (August 2006), pp. 812-826. by Anna Mulgrew-Nesbitt, Karthikeyan Diraviyam, Jiyao Wang, et al.Shaneen Singh, Paul Murray, Zhaohui Li, Laura Rogers, Nebojsa Mirkovic, Diana Murray posted to lipid lipid-protein pip2 protein simulations by dimka on 2006-11-05 19:29:03 as along with 1 person kallberg
	Mechanosensitivity of GIRK Channels Is Mediated by Protein Kinase C-dependent Channel-Phosphatidylinositol 4,5-Bisphosphate Interaction [My Copy] J. Biol. Chem., Vol. 279, No. 8. (20 February 2004), pp. 7037-7047. by Liyan Zhang, Jong-Kook Lee, Scott A. John, Nobuyuki Uozumi, Itsuo Kodama posted to acetate fluorescence hydrolysis inhibitor kinase luminescent mutagenesis naphthalene osmosis phosphatidylinositol potassium protein spectrometry staurosporine structure tetradecanoylphorbol pip2 by dimka on 2006-09-27 01:20:25 as
	Mixed Atomistic and Coarse-Grained Molecular Dynamics: Simulation of a Membrane-Bound Ion Channel [My Copy] The Journal of Physical Chemistry B, Vol. 110, No. 31. (1 August 2006), pp. 15045-15048. by Qiang Shi, Sergei Izvekov, Gregory A. Voth posted to coarse-grain lipid md membrane protein by dimka on 2006-09-25 22:05:23 as along with 3 people flbarroso arnaucordomi RamuAnandakrishnan
	THESEUS: maximum likelihood superpositioning and analysis of macromolecular structures [My Copy] Bioinformatics, Vol. 22, No. 17. (1 September 2006), pp. 2171-2172. by Douglas L. Theobald, Deborah S. Wuttke posted to alignment multiple protein structure by dimka on 2006-09-12 19:48:26 as along with 1 person and 2 groups ana structural_bioinformatics Bioinformatics
	FRET Study of Membrane Proteins: Simulation-Based Fitting for Analysis of Membrane Protein Embedment and Association [My Copy] Biophys. J., Vol. 91, No. 2. (15 July 2006), pp. 454-466. by Petr V. Nazarov, Rob B. Koehorst, Werner L. Vos, Vladimir V. Apanasovich, Marcus A. Hemminga posted to fret lipid membrane protein by dimka on 2006-09-12 19:36:43 as along with 1 person xdeupi
	Monte Carlo simulation studies of lipid order parameter profiles near integral membrane proteins [My Copy] Biophys. J., Vol. 59, No. 2. (1 February 1991), pp. 261-270. by M. M. Sperotto, O. G. Mouritsen posted to lipid lipid-order-parameter lipid-protein membrane protein by dimka on 2006-06-29 22:11:34 as
	Hydrophobic folding units derived from dissimilar monomer structures and their interactions. [My Copy] Protein Sci, Vol. 6, No. 1. (January 1997), pp. 24-42. by C. J. Tsai, R. Nussinov posted to automatic domain identification partition protein structure by dimka on 2006-06-14 22:04:00 as
	An automatic method involving cluster analysis of secondary structures for the identification of domains in proteins. [My Copy] Protein Sci, Vol. 4, No. 3. (March 1995), pp. 506-520. by R. Sowdhamini, T. L. Blundell posted to automatic domain identification partition protein structure by dimka on 2006-06-14 21:57:28 as along with 3 people RebeccaHamer skhadar medic0747
	Folding units in globular proteins. [My Copy] Proc Natl Acad Sci U S A, Vol. 78, No. 7. (July 1981), pp. 4304-4308. by A. M. Lesk, G. D. Rose posted to automatic definition domain identification partition protein structure by dimka on 2006-06-14 21:53:09 as
	Structural domains in proteins and their role in the dynamics of protein function. [My Copy] Prog Biophys Mol Biol, Vol. 42, No. 1. (1983), pp. 21-78. by J. Janin, S. J. Wodak posted to automatic domain identification partition protein structure by dimka on 2006-06-14 21:47:57 as along with 1 person and 1 group yongzhao TSRI_MGL
	SCOP: a structural classification of proteins database for the investigation of sequences and structures. [My Copy] Journal of molecular biology, Vol. 247, No. 4. (7 April 1995), pp. 536-540. by A. G. Murzin, S. E. Brenner, T. Hubbard, C. Chothia posted to classification protein scop structures by dimka on 2006-06-14 17:47:39 as along with 14 people timhubbard flbarroso yuslinaz semin pjcite chrn chad_davis j3xucite sriram_s aengisch massivemayhem cjeans siebertm sim82
	Mapping the protein universe. [My Copy] Science, Vol. 273, No. 5275. (2 August 1996), pp. 595-603. by L. Holm, C. Sander posted to classification fssp protein structure by dimka on 2006-06-13 22:37:49 as along with 7 people and 2 groups operon ana barry robert AbnerCYH sim82 laurabailey structural_bioinformatics Bioinformatics
	Automatic classification of protein structure by using Gauss integrals. [My Copy] Proc Natl Acad Sci U S A, Vol. 100, No. 1. (7 January 2003), pp. 119-124. by P. Rogen, B. Fain posted to classification protein structure by dimka on 2006-06-13 22:07:56 as along with 3 people and 2 groups ana barry tny structural_bioinformatics Bioinformatics
	CATH--a hierarchic classification of protein domain structures. [My Copy] Structure (London, England : 1993), Vol. 5, No. 8. (15 August 1997), pp. 1093-1108. by C. A. Orengo, A. D. Michie, S. Jones, D. T. Jones, M. B. Swindells, J. M. Thornton posted to cath classification domain protein structure by dimka on 2006-06-13 19:17:16 as along with 14 people and 4 groups ucbcjbm flbarroso kumar_physics semin sebk tjimenez jwm chad_davis Einat caporaso massivemayhem sim82 jteyra gulkur structural_bioinformatics Radiation_Damage Stressosome biomedical-nlp
	Automated functional classification of experimental and predicted protein structures. [My Copy] BMC bioinformatics, Vol. 7 (02 June 2006), 278. by K. Wang, R. Samudrala posted to clasification functional protein by dimka on 2006-06-13 18:15:29 as along with 1 person sgoetz
	Approximation of protein structure for fast similarity measures. [My Copy] J Comput Biol, Vol. 11, No. 2-3. (2004), pp. 299-317. by I. Lotan, F. Schwarzer posted to alignment protein structure by dimka on 2006-05-30 21:50:56 as
	Present at the Flood: How Structural Molecular Biology Came About [My Copy] (May 2005) by Richard E. Dickerson posted to book function history protein structure by dimka on 2006-05-27 22:50:57 as
	Structural Basis for the Phosphorylation-regulated Focal Adhesion Targeting of Type Igamma Phosphatidylinositol Phosphate Kinase (PIPKIgamma) by Talin. [My Copy] J Mol Biol (23 March 2006) by Xiangming Kong, Xiaoxia Wang, Saurav Misra, Jun Qin posted to nmr pip2-binding protein structure by dimka on 2006-04-20 18:28:38 as
	MAMMOTH (matching molecular models obtained from theory): an automated method for model comparison. [My Copy] Protein science : a publication of the Protein Society, Vol. 11, No. 11. (1 November 2002), pp. 2606-2621. by Angel R. Ortiz, Charlie E. Strauss, Osvaldo Olmea posted to algorithm alignment conformation databases folding mammoth models molecular protein secondary simulation software statistics structure by dimka on 2006-03-28 23:52:07 as along with 8 people and 2 groups tomjad awarlau ana iakes jwm analogAI sebk tjimenez structural_bioinformatics Bioinformatics
	On the quality of tree-based protein classification [My Copy] Bioinformatics, Vol. 21, No. 9. (1 May 2005), pp. 1876-1890. by Betty Lazareva-Ulitsky, Karen Diemer, Paul D. Thomas posted to classification protein structure tree by dimka on 2006-03-28 23:45:55 as
	A consensus view of fold space: combining SCOP, CATH, and the Dali Domain Dictionary. [My Copy] Protein Sci, Vol. 12, No. 10. (October 2003), pp. 2150-2160. by R. Day, D. A. Beck, R. S. Armen, V. Daggett posted to cath classification dali protein scop structure by dimka on 2006-03-28 23:43:27 as along with 4 people and 2 groups ana barry tjimenez hmk structural_bioinformatics Bioinformatics
	SCOP database in 2002: refinements accommodate structural genomics. [My Copy] Nucleic acids research, Vol. 30, No. 1. (1 January 2002), pp. 264-267. by L. Lo Conte, S. E. Brenner, T. J. Hubbard, C. Chothia, A. G. Murzin posted to classification protein scop structure by dimka on 2006-03-28 23:41:34 as along with 4 people timhubbard GermanErlenkamp tjimenez cjeans
	SCOP: a structural classification of proteins database. [My Copy] Nucleic acids research, Vol. 28, No. 1. (1 January 2000), pp. 257-259. by L. Lo Conte, B. Ailey, T. J. Hubbard, S. E. Brenner, A. G. Murzin, C. Chothia posted to classification protein scop structure by dimka on 2006-03-28 23:38:49 as along with 4 people maria_hauser timhubbard tjimenez cjeans
	Effect of lipid composition on the "membrane response" induced by a fusion peptide. [My Copy] Biochemistry, Vol. 44, No. 44. (8 November 2005), pp. 14626-14637. by P. E. Volynsky, A. A. Polyansky, N. A. Simakov, A. S. Arseniev, R. G. Efremov posted to simulstions membrane protein md by dimka on 2006-03-06 16:23:27 as
	Molecular dynamics simulations of large integral membrane proteins with an implicit membrane model. [My Copy] J Phys Chem B Condens Matter Mater Surf Interfaces Biophys, Vol. 110, No. 1. (12 January 2006), pp. 548-556. by S. Tanizaki, M. Feig posted to gb implicit md membrane protein water by dimka on 2006-03-06 16:15:20 as along with 2 people and 1 group onufriev xdeupi LabCompMed
	Insertion and Assembly of Membrane Proteins via Simulation. [My Copy] J Am Chem Soc, Vol. 128, No. 8. (1 March 2006), pp. 2697-2704. by P. J. Bond, M. S. Sansom posted to insertion membrane protein protocol by dimka on 2006-03-06 16:07:30 as along with 2 people choonpeng loison
	The Protein Data Bank [My Copy] Nucleic Acids Research, Vol. 28 (2000), pp. 235-242. by H. M. Berman, J. Westbrook, Z. Feng, et al.G. Gilliland, T. N. Bhat, H. Weissig, I. N. Shindyalov, P. E. Bourne posted to databank pdb protein by dimka on 2006-02-21 21:45:50 as along with 1 person lna
	Multiple Alignment of protein structures and sequences for VMD [My Copy] Bioinformatics, Vol. 22, No. 4. (15 February 2006), pp. 504-506. by John Eargle, Dan Wright, Zaida Luthey-Schulten posted to alignment multiple protein structure by dimka on 2006-02-18 00:24:50 as along with 2 people and 2 groups jeargle marcius BioinfoCIPF SGU-CIPF
	'Protein Peeling': an approach for splitting a 3D protein structure into compact fragments. [My Copy] Bioinformatics, Vol. 22, No. 2. (15 January 2006), pp. 129-133. by Jean-Christophe Gelly, Alexandre G. de Brevern, Serge Hazout posted to automatic domain identification partition protein structure by dimka on 2006-02-01 22:55:20 as along with 6 people and 4 groups ana barry ttjoseph marcius nickolay choonpeng structural_bioinformatics Bioinformatics BioinfoCIPF SGU-CIPF
	G protein gated potassium channels. [My Copy] Adv Second Messenger Phosphoprotein Res, Vol. 33 (1999), pp. 179-201. by J. L. Sui, K. Chan, M. N. Langan, M. Vivaudou, D. E. Logothetis posted to ach adenosine channel distribution effect gating gtp-binding homology humans ion knockout lipid mice molecular potassium protein sequence triphosphate by dimka on 2005-11-23 19:48:13 as
	The (beta)gamma subunits of G proteins gate a K(+) channel by pivoted bending of a transmembrane segment. [My Copy] Mol Cell, Vol. 10, No. 3. (September 2002), pp. 469-481. by T. Jin, L. Peng, T. Mirshahi, et al.T. Rohacs, K. W. Chan, R. Sanchez, D. E. Logothetis posted to alignment channel fusion glycine gtp-binding heterotrimeric mutagenesis oocyte proline protein recombinant sequence structure subunits by dimka on 2005-11-23 19:42:19 as
	An integrated approach to the analysis and modeling of protein sequences and structures. I. Protein structural alignment and a quantitative measure for protein structural distance. [My Copy] J Mol Biol, Vol. 301, No. 3. (18 August 2000), pp. 665-678. by A. S. Yang, B. Honig posted to alignment protein review structure by dimka on 2005-11-16 20:29:42 as along with 2 people and 2 groups ana analogAI structural_bioinformatics Bioinformatics
	Membrane protein structure quality in molecular dynamics simulation. [My Copy] J Mol Graph Model (12 August 2005) by Richard J J. Law, Charlotte Capener, Marc Baaden, et al.Peter J J. Bond, Jeff Campbell, George Patargias, Yalini Arinaminpathy, Mark S P S. Sansom posted to membrane protein review simulations by dimka on 2005-08-31 17:46:10 as along with 1 person baaden
	Specificity determinants in phosphoinositide dephosphorylation: crystal structure of an archetypal inositol polyphosphate 5-phosphatase [My Copy] Cell, Vol. 105, No. 3. (2001), pp. 379-389. by Y. Tsujishita, S. Guo, L. E. Stolz, J. D. York, J. H. Hurley posted to phosphorylation protein quaternary recombinant specificity structure substrate alignment binding calcium catalytic cloning conformation crystallography domain enzyme folding humans hydrolase inhibitor inositol models molecular monoester mutation nerve phosphate phosphoric by dimka on 2005-06-06 17:48:05 as
	Models and simulations of ion channels and related membrane proteins [My Copy] Current opinion in structural biology, Vol. 8, No. 2. (1998), pp. 237-244. by M. S. Sansom posted to bacteriorhodopsin bilayer channel gramicidin humans ion lipid membrane models molecular nicotinic protein receptors thermodynamics viral by dimka on 2005-06-06 17:48:04 as
	Effects of charged amino acid mutations on the bimolecular kinetics of reduction of yeast iso-1-ferricytochrome c by bovine ferrocytochrome b5 [My Copy] Biochemistry (John Wiley & Sons), Vol. 32, No. 26. (1993), pp. 6613-6623. by S. H. Northrup, K. A. Thomasson, C. M. Miller, et al.P. D. Barker, L. D. Eltis, J. G. Guillemette, S. C. Inglis, A. G. Mauk posted to amp analog b5 binding comparative conformation cytochrome derivatives heme histidine kinetics lysine mutagenesis oxidation-reduction protein sequence by dimka on 2005-06-06 17:48:02 as
	Structural basis of inward rectification: cytoplasmic pore of the G protein-gated inward rectifier GIRK1 at 1.8 A resolution [My Copy] Cell, Vol. 111, No. 7. (2002), pp. 957-965. by M. Nishida, R. Mackinnon posted to cell channel cytoplasm eukaryotic gtp-binding inwardly membrane mice polyamines potassium protein rectifying sequence structure tertiary by dimka on 2005-06-06 17:48:00 as
	Electrostatic effects in proteins [My Copy] Annual Review of Biophysics and Biophysical Chemistry, Vol. 14 (1985), pp. 387-417. by J. B. Matthew posted to concentration conformation diffraction humans hydrogen-ion kinetics magnetic mathematics peptide protein resonance solvents spectroscopy by dimka on 2005-06-06 17:47:57 as
	Phosphatidylinositol-4,5-bisphosphate, PIP2, controls KCNQ1/KCNE1 voltage-gated potassium channels: a functional homology between voltage-gated and inward rectifier K+ channels [My Copy] The EMBO journal, Vol. 22, No. 20. (2003), pp. 5412-5421. by G. Loussouarn, K. H. Park, C. Bellocq, I. Baro, F. Charpentier, D. Escande posted to adenosine calcium cells cercopithecus channel effects guinea heart inwardly kinetics magnesium molecular patch-clamp phosphatidylinositol potassium protein rectify secondary sequence structure transfection triphosphate pip2 by dimka on 2005-06-06 17:47:55 as
	X-ray structure of a voltage-dependent K+ channel [My Copy] Nature, Vol. 423, No. 6935. (2003), pp. 33-41. by Y. Jiang, A. Lee, J. Chen, et al.V. Ruta, M. Cadene, B. T. Chait, R. Mackinnon posted to amp antagonist antibody channel crystallography electrostatics fab gating hydrophobicity inhibitor ion models molecular monoclonal potassium protein sequence structure voltage-gated by dimka on 2005-06-06 17:47:51 as
	Crystal structure and mechanism of a calcium-gated potassium channel [My Copy] Nature, Vol. 417, No. 6888. (2002), pp. 515-522. by Y. Jiang, A. Lee, J. Chen, M. Cadene, B. T. Chait, R. Mackinnon posted to bacterial bilayer calcium-activated channel crystallography electrophysiology ion ligands lipid methanobacterium molecular potassium protein relationship sequence structure structure-activity tertiary thermodynamics by dimka on 2005-06-06 17:47:51 as
	Direct activation of inward rectifier potassium channels by PIP2 and its stabilization by Gbetagamma [My Copy] Nature, Vol. 391, No. 6669. (1998), pp. 803-806. by C. L. Huang, S. Feng, D. W. Hilgemann posted to channel data gating gtp-binding insertional inwardly ion molecular mutagenesis phosphatidylinositol potassium protein recombinant sequence pip2 by dimka on 2005-06-06 17:47:50 as
	Structural basis of the membrane-targeting and unmasking mechanisms of the radixin FERM domain [My Copy] The EMBO journal, Vol. 19, No. 17. (2000), pp. 4449-4462. by K. Hamada, T. Shimizu, T. Matsui, S. Tsukita, T. Hakoshima posted to blood conformation crystallography cytoskeleton homology inositol membrane models molecular protein sequence by dimka on 2005-06-06 17:47:49 as

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md	100
pip2	100
channel	85
structure	84
lipid	81
membrane	72
kir	61
protein	61
mmult-ref	60
gating	47
simulation	47
molecular	44
phosphatidylinositol	38
potassium	38
simulations	38
review	37
ph	34
ph-sensor	33
sequence	33
romk	29
ion	25
katp	24
alignment	22
bilayer	22
conformation	21
dppc	21
kir62	21
classification	20
kcsa	20
models	20
irk1	19
kir21	17
binding	15
electrostatics	15
inositol	15
mutation	15
peptide	14
amp	13
domain	12
inwardly	12
kir11	12
mutagenesis	12
adenosine	11
analysis	11
cholesterol	11
crystallography	11
electrophysiology	11
gtp-binding	11
tertiary	11
triphosphate	11
dmpc	10
free-energy	10
girk	10
g-protein	10
kinetics	10
multiple	10
charmm	9
conductivity	9
homology	9
humans	9
inhibitor	9
model	9
nmr	9
patch-clamp	9
pore	9
smallmol	9
structure-activity	9
thermodynamics	9
automatic	8
coarse-grain	8
fluorescence	8
girk1	8
headgroup	8
kir31	8
kir41	8
kirbac11	8
kv12	8
ligand	8
open-closed	8
phospholipase	8
phosphorylation	8
proteins	8
atp	7
calcium	7
deltag	7
force-field	7
gromacs	7
methods	7
pca	7
phosphate	7
protein-lipid	7
rats	7
recombinant	7
relationship	7
scop	7
site-directed	7
sites	7
transduction	7
ach	6
activation	6
chimera	6
disease	6
dna	6
dynamics	6
folding	6
heart	6
interaction	6
kir23	6
kv	6
laevis	6
microscopy	6
open	6
permeation	6
phosphatidylcholine	6
phosphoinositides	6
popc	6
rectify	6
secondary	6
signal	6
sodium	6
software	6
specificity	6
voltage-gated	6
cations	5
cell	5
diffusion	5
enzyme	5
guanosine	5
heterotrimeric	5
identification	5
ip3	5
kir34	5
lipid-area	5
md-analysis	5
mechanosensitive	5
membrane-protein	5
modeling	5
mscl	5
muscarinic	5
myocardium	5
namd	5
orientation	5
partition	5
polyamines	5
rectifying	5
selectivity	5
techniques	5
tool	5
voltage	5
1-phosphatidylinositol	4
algorithm	4
bacterial	4
blocker	4
blood	4
chemistry	4
concentration	4
crystal	4
cytoplasm	4
database	4
derivatives	4
desease	4
desmond	4
distribution	4
dopc	4
electrostatic	4
equilibration	4
hydrogen-ion	4
hydrolysis	4
implicit	4
inhibition	4
inositiol	4
irk3	4
kir51	4
kirbac31	4
lipid-protein	4
modeller	4
montecarlo	4
pdb	4
phosphoprotein	4
pip3	4
pressure	4
receptor	4
rectification	4
single-channel	4
synthesis	4
trajectory	4
transport	4
3-kinase	3
ab-initio	3
ach-receptor-channel	3
acyl-coa	3
assembly	3
bartter	3
biological	3
biophysics	3
book	3
brownian	3
charge	3
charmm27	3
chemical	3
comparative	3
compare	3
competitive	3
computation	3
cultured	3
cysteine	3
cytoplasmic	3
cytoskeleton	3
cytosol	3
data	3
diffraction	3
dimyristoyl	3
docking	3
drug-design	3
effects	3
electric	3
experimental	3
factor	3
fep	3
force-fields	3
function	3
gb	3
girk2	3
girk4	3
glycine	3
gromos	3
growth	3
helix	3
implicit-membrane	3
isoenzyme	3
k-channel	3
kir2	3
kir3	3
kvap	3
lc-coa	3
lipid-order-parameter	3
macromolecular	3
magnesium	3
mcd	3
mechanism	3
mice	3
mmpbsa	3
oocyte	3
pb	3
pcm	3
permeability	3
perturbation	3
physiology	3
pi	3
pip2-binding	3
pkc	3
popg	3
potential	3
predict	3
program	3
protein-membrane	3
pull	3
rdf	3
receptors	3
recording	3
rubidium	3
scd	3
shaker	3
smd	3
spectroscopy	3
statistics	3
syndrome	3
temperature	3
transfection	3
2d	2
5-o-3-thiotriphosphate	2
acetate	2
acetylcholine	2
ala	2
alcohol	2
allosteric	2
amino	2
andersen	2
antagonist	2
antibody	2
arachidonic	2
area	2
arginine	2
assesment	2
atria	2
autodock	2
barium	2
bd	2
beta-gamma	2
binding-energy	2
bioinformatics	2
bonding	2
camp	2
carrier	2
catalytic	2
cath	2
cells	2
cercopithecus	2
charged	2
charges	2
cho	2
clathrin	2
cma	2
co2	2
coa	2
computational	2
correlated	2
covariance	2
databases	2
definition	2
derivative	2
dielectric	2
diglycerides	2
dose-response	2
dpps	2
dynamic	2
electron	2
epidermal	2
epsin	2
esp	2
essential_dynamics	2
exchange	2
fab	2
fingerprint	2
fragment	2
fragments	2
gaussian	2
gelsolin	2
gene	2
glutathione	2
gpcr	2
graph	2
hbc	2
hinge	2
human	2
hydrophobicity	2
ied	2
ige-receptor	2
kcnq	2
kinase	2
kir6	2
kirbac	2
kv11	2
library	2
lie	2
ligands	2
linear-energy-interaction	2
lipids	2
liposome	2
liposomes	2
long	2
luminescent	2
lysine	2
m1	2
m2	2
magnetic	2
mammoth	2
mathematics	2
mc	2
memory	2
method	2
microfilament	2
mixture	2
mscs	2
muscle	2
nerve	2
nose-hoover	2
nucleotide	2
nucleus	2
olfactory	2
order-parameter	2
parameterization	2
pcf	2
phosphatidylserine	2
phosphinositides	2
phospholipid	2
phosphotransferase	2
poisson-bolzmann	2
pops	2
porin	2
potentials	2
properties	2
prostein	2
protein-ligand	2
protocol	2
proton	2
protonation	2
pseudomallei	2
quantum	2
quaternary	2
radiation	2
replica	2
resonance	2
sampling	2
score	2
sequesteration	2
sequestering	2
simulaid	2
solvation	2
spectrometry	2
statistical	2
stoichiometry	2
substitution	2
substrate	2
subunits	2
surface	2
tea	2
tetradecanoylphorbol	2
theory	2
transcription	2
tree	2
trp	2
tutorial	2
unsaturated	2
vdw	2
vesicle	2
visualization	2
vmd	2
water	2
110-decanediamine	1
1-12-dodecanediamine	1
2-naphthylamine	1
3d-to-2d	1
3-ribose	1
45-bisphosphate	1
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em	1
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ige	1
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ip7	1
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oleic	1
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ompla	1
oocytes	1
opls	1
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pc	1
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pi34p2	1
pi3k	1
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pro	1
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proline	1
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protein-tyrosine	1
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pxoom	1
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qt	1
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r	1
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ras	1
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rev1	1
rhodopsin	1
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rip	1
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s143f	1
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second	1
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server	1
setup	1
shake	1
shape	1
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small	1
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stimulation	1
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sulf	1
sulfonyurea	1
sulfur	1
superfamily	1
sur1	1
sur2	1
synaptic	1
systems	1
template	1
tendem	1
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thickness	1
thionucleotide	1
timescale	1
transferase	1
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transmembrane	1
trehalose	1
trp8	1
trp-channel	1
trpm4	1
tubules	1
two-pore	1
typology	1
v302m	1
vector	1
venom	1
viewer	1
viral	1
voltage-sensor	1
volume	1
water-protein	1

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