PhyloBayes 3: a Bayesian software package for phylogenetic reconstruction and molecular dating. Export

@article{citeulike:4886186, abstract = {MOTIVATION: A variety of probabilistic models describing the evolution of DNA or protein sequences have been proposed for phylogenetic reconstruction or for molecular dating. However, there still lacks a common implementation allowing one to freely combine these independent features, so as to test their ability to jointly improve phylogenetic and dating accuracy. RESULTS: We propose a software package, PhyloBayes 3, which can be used for conducting Bayesian phylogenetic reconstruction and molecular dating analyses, using a large variety of amino acid replacement and nucleotide substitution models, including empirical mixtures or non-parametric models, as well as alternative clock relaxation processes.}, author = {Lartillot, Nicolas and Lepage, Thomas and Blanquart, Samuel}, citeulike-article-id = {4886186}, citeulike-linkout-0 = {http://dx.doi.org/10.1093/bioinformatics/btp368}, citeulike-linkout-1 = {http://bioinformatics.oxfordjournals.org/cgi/content/abstract/25/17/2286}, citeulike-linkout-2 = {http://view.ncbi.nlm.nih.gov/pubmed/19535536}, citeulike-linkout-3 = {http://www.hubmed.org/display.cgi?uids=19535536}, day = {1}, doi = {10.1093/bioinformatics/btp368}, issn = {1367-4811}, journal = {Bioinformatics (Oxford, England)}, keywords = {bayesian, molclock, phylogenetics}, month = {September}, number = {17}, pages = {2286--2288}, posted-at = {2009-08-20 18:55:41}, priority = {2}, title = {PhyloBayes 3: a Bayesian software package for phylogenetic reconstruction and molecular dating.}, url = {http://dx.doi.org/10.1093/bioinformatics/btp368}, volume = {25}, year = {2009} }

TY - JOUR ID - citeulike:4886186 L3 - citeulike-article-id:4886186 N2 - MOTIVATION: A variety of probabilistic models describing the evolution of DNA or protein sequences have been proposed for phylogenetic reconstruction or for molecular dating. However, there still lacks a common implementation allowing one to freely combine these independent features, so as to test their ability to jointly improve phylogenetic and dating accuracy. RESULTS: We propose a software package, PhyloBayes 3, which can be used for conducting Bayesian phylogenetic reconstruction and molecular dating analyses, using a large variety of amino acid replacement and nucleotide substitution models, including empirical mixtures or non-parametric models, as well as alternative clock relaxation processes. IS - 17 JF - Bioinformatics (Oxford, England) SN - 1367-4811 EP - 2288 TI - PhyloBayes 3: a Bayesian software package for phylogenetic reconstruction and molecular dating. VL - 25 SP - 2286 KW - bayesian KW - molclock KW - phylogenetics AU - Lartillot, Nicolas AU - Lepage, Thomas AU - Blanquart, Samuel PY - 2009/09/01/ UR - http://dx.doi.org/10.1093/bioinformatics/btp368 ER -