djkt's Bustamante:CD [24 articles] Export

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	Targets of Balancing Selection in the Human Genome [My Copy] Mol Biol Evol, Vol. 26, No. 12. (1 December 2009), pp. 2755-2764. by Aida M. Andres, Melissa J. Hubisz, Amit Indap, et al.Dara G. Torgerson, Jeremiah D. Degenhardt, Adam R. Boyko, Ryan N. Gutenkunst, Thomas J. White, Eric D. Green, Carlos D. Bustamante, Andrew G. Clark, Rasmus Nielsen posted to selection proteins human by djkt on 2009-11-11 00:39:20 as along with 3 people and 1 group qayub sameersoi aprasad Journal picks
	Inferring the Joint Demographic History of Multiple Populations from Multidimensional SNP Frequency Data [My Copy] PLoS Genet, Vol. 5, No. 10. (23 October 2009), e1000695. by Ryan N. Gutenkunst, Ryan D. Hernandez, Scott H. Williamson, Carlos D. Bustamante posted to snps popgen model_selection human demography by djkt on 2009-11-02 19:11:00 as along with 2 people JeffreyHatcher maren
	Coat Variation in the Domestic Dog Is Governed by Variants in Three Genes [My Copy] Science, Vol. 326, No. 5949. (2 October 2009), pp. 150-153. by Edouard Cadieu, Mark W. Neff, Pascale Quignon, et al.Kari Walsh, Kevin Chase, Heidi G. Parker, Bridgett M. VonHoldt, Alison Rhue, Adam Boyko, Alexandra Byers, Aaron Wong, Dana S. Mosher, Abdel G. Elkahloun, Tyrone C. Spady, Catherine Andre, K. Gordon Lark, Michelle Cargill, Carlos D. Bustamante, Robert K. Wayne, Elaine A. Ostrander posted to popgen dog by djkt on 2009-10-03 00:10:59 as along with 3 people Keywan mgmeadow t08681mn
	Evolutionary Processes Acting on Candidate cis-Regulatory Regions in Humans Inferred from Patterns of Polymorphism and Divergence [My Copy] PLoS Genet, Vol. 5, No. 8. (7 August 2009), e1000592. by Dara G. Torgerson, Adam R. Boyko, Ryan D. Hernandez, et al.Amit Indap, Xiaolan Hu, Thomas J. White, John J. Sninsky, Michele Cargill, Mark D. Adams, Carlos D. Bustamante, Andrew G. Clark posted to evolution expression human popgen selection by djkt on 2009-08-07 17:13:34 as along with 5 people and 3 groups emptyhb cisevol gdb SeaBird qayub cis-regulatory-evolution BergmanLab Journal picks
	Darwinian and demographic forces affecting human protein coding genes [My Copy] Genome Research, Vol. 19, No. 5. (1 May 2009), pp. 838-849. by Rasmus Nielsen, Melissa J. Hubisz, Ines Hellmann, et al.Dara Torgerson, Aida M. Andrés, Anders Albrechtsen, Ryan Gutenkunst, Mark D. Adams, Michele Cargill, Adam Boyko, Amit Indap, Carlos D. Bustamante, Andrew G. Clark posted to demography human popgen proteins selection by djkt on 2009-05-02 02:46:50 as along with 3 people operon daveGerrard psique
	Global distribution of genomic diversity underscores rich complex history of continental human populations [My Copy] Genome Research, Vol. 19, No. 5. (May 2009), pp. 795-803. by Adam Auton, Katarzyna Bryc, Adam R. Boyko, et al.Kirk E. Lohmueller, John Novembre, Andy Reynolds, Amit Indap, Mark H. Wright, Jeremiah D. Degenhardt, Ryan N. Gutenkunst, Karen S. King, Matthew R. Nelson, Carlos D. Bustamante posted to demography diversity human popgen by djkt on 2009-05-02 02:38:29 as along with 4 people dbensasson psique xingxu daforerog
	Methods for Human Demographic Inference Using Haplotype Patterns From Genome-wide SNP Data [My Copy] Genetics (2 March 2009), genetics.108.099275. by Kirk E. Lohmueller, Carlos D. Bustamante, Andrew G. Clark posted to demography haplotype popgen snps by djkt on 2009-04-29 22:38:01 as along with 2 people sameersoi ilyashl
	Genome-Wide Survey of SNP Variation Uncovers the Genetic Structure of Cattle Breeds [My Copy] Science, Vol. 324, No. 5926. (24 April 2009), pp. 528-532. by The, Richard A. Gibbs, Jeremy F. Taylor, et al.Curtis P. Van Tassell, William Barendse, Kellye A. Eversole, Clare A. Gill, Ronnie D. Green, Debora L. Hamernik, Steven M. Kappes, Sigbjorn Lien, Lakshmi K. Matukumalli, John C. Mcewan, Lynne V. Nazareth, Robert D. Schnabel, George M. Weinstock, David A. Wheeler, Paolo Ajmone-Marsan, Paul J. Boettcher, Alexandre R. Caetano, Jose F. Garcia, Olivier Hanotte, Paola Mariani, Loren C. Skow, Tad S. Sonstegard, John L. Williams, Boubacar Diallo, Lemecha Hailemariam, Mario L. Martinez, Chris A. Morris, Luiz O. Silva, Richard J. Spelman, Woudyalew Mulatu, Keyan Zhao, Colette A. Abbey, Morris Agaba, Flabio R. Araujo, Rowan J. Bunch, James Burton, Chiara Gorni, Hanotte Olivier, Blair E. Harrison, Bill Luff, Marco A. Machado, Joel Mwakaya, Graham Plastow, Warren Sim, Timothy Smith, Merle B. Thomas, Alessio Valentini, Paul Williams, James Womack, John A. Woolliams, Yue Liu, Xiang Qin, Kim C. Worley, Chuan Gao, Huaiyang Jiang, Stephen S. Moore, Yanru Ren, Xing-Zhi Song, Carlos D. Bustamante, Ryan D. Hernandez, Donna M. Muzny, Shobha Patil, Anthony San Lucas, Qing Fu, Matthew P. Kent, Richard Vega, Aruna Matukumalli, Sean Mcwilliam, Gert Sclep, Katarzyna Bryc, Jungwoo Choi, Hong Gao, John J. Grefenstette, Brenda Murdoch, Alessandra Stella, Rafael Villa-Angulo, Mark Wright, Jan Aerts, Oliver Jann, Riccardo Negrini, Mike E. Goddard, Ben J. Hayes, Daniel G. Bradley, Barbosa, Lilian P. Lau, George E. Liu, David J. Lynn, Francesca Panzitta, Ken G. Dodds posted to domestication popgen selection snps by djkt on 2009-04-24 19:46:01 as along with 2 people jbhiatt natstreet
	Molecular and Evolutionary History of Melanism in North American Gray Wolves [My Copy] Science, Vol. 323, No. 5919. (6 March 2009), pp. 1339-1343. by Tovi M. Anderson, Bridgett M. vonHoldt, Sophie I. Candille, et al.Marco Musiani, Claudia Greco, Daniel R. Stahler, Douglas W. Smith, Badri Padhukasahasram, Ettore Randi, Jennifer A. Leonard, Carlos D. Bustamante, Elaine A. Ostrander, Hua Tang, Robert K. Wayne, Gregory S. Barsh posted to dog domestication selection by djkt on 2009-03-06 16:26:41 as along with 5 people lusk biomcgary quesada smit2jam dlhoyt
	Linkage Disequilibrium and Demographic History of Wild and Domestic Canids [My Copy] Genetics (2 February 2009), genetics.108.098830. by Melissa M. Gray, Julie Granka, Carlos D. Bustamante, et al.Nathan Sutter, Adam Boyko, Lan Zhu, Elaine Ostrander, Robert Wayne posted to dog domestication popgen by djkt on 2009-02-06 14:03:24 as
	Copy Number Variation of CCL3-like Genes Affects Rate of Progression to Simian-AIDS in Rhesus Macaques (Macaca mulatta) [My Copy] PLoS Genet, Vol. 5, No. 1. (23 January 2009), e1000346. by Jeremiah D. Degenhardt, Paola de Candia, Adrien Chabot, et al.Stuart Schwartz, Les Henderson, Binhua Ling, Meredith Hunter, Zhaoshi Jiang, Robert E. Palermo, Michael Katze, Evan E. Eichler, Mario Ventura, Jeffrey Rogers, Preston Marx, Yoav Gilad, Carlos D. Bustamante posted to hiv primates sv by djkt on 2009-02-05 17:56:45 as along with 3 people jsatkosk xingxu jdbowes
	Evaluating signatures of sex-specific processes in the human genome [My Copy] Nature Genetics, Vol. 41, No. 1., pp. 8-10. by Carlos D. Bustamante, Sohini Ramachandran posted to chromosome evolution human popgen by djkt on 2009-01-02 19:40:40 as
	Genes mirror geography within Europe [My Copy] Nature, Vol. 456, No. 7218. (31 August 2008), pp. 98-101. by John Novembre, Toby Johnson, Katarzyna Bryc, et al.Zoltan Kutalik, Adam R. Boyko, Adam Auton, Amit Indap, Karen S. King, Sven Bergmann, Matthew R. Nelson, Matthew Stephens, Carlos D. Bustamante posted to geography human popgen snps by djkt on 2008-11-05 21:30:55 as along with 13 people and 2 groups pansapiens engelhardt anphony ArtemPankin huzz Zephyrus druvus jfr inesdesantiago wilbur jo_davies wsjames pkonings Khavkin's lab Roswell Cancer Crosstalk
	Context-Dependent Mutation Rates May Cause Spurious Signatures of a Fixation Bias Favoring Higher GC-Content in Humans [My Copy] Mol Biol Evol, Vol. 24, No. 10. (1 October 2007), pp. 2196-2202. by Ryan D. Hernandez, Scott H. Williamson, Lan Zhu, Carlos D. Bustamante posted to bgc popgen by djkt on 2008-08-08 01:37:37 as
	Context dependence, ancestral misidentification, and spurious signatures of natural selection [My Copy] Mol. Biol. Evol., Vol. 24, No. 8. (2007), pp. 1792-1800. by R. D. Hernandez, S. H. Williamson, C. D. Bustamante posted to msa popgen snps by djkt on 2008-08-08 01:33:45 as along with 2 people bpb pradiptaray
	Patterns of Positive Selection in Six Mammalian Genomes [My Copy] PLoS Genet, Vol. 4, No. 8. (1 August 2008), e1000144. by Carolin Kosiol, Tomáš Vinař, Rute R. da Fonseca, et al.Melissa J. Hubisz, Carlos D. Bustamante, Rasmus Nielsen, Adam Siepel posted to evolution mammals proteins selection by djkt on 2008-08-01 18:26:18 as along with 11 people Garamonfok daveGerrard ilyashl diamantis renewang skembel madreach bpcusack gjuggler cabbagesofdoom hdopazo
	Exploring Population Genetic Models With Recombination Using Efficient Forward-Time Simulations [My Copy] Genetics, Vol. 178, No. 4. (1 April 2008), pp. 2417-2427. by Badri Padhukasahasram, Paul Marjoram, Jeffrey D. Wall, Carlos D. Bustamante, Magnus Nordborg posted to popgen recombination simulation by djkt on 2008-04-23 03:22:29 as along with 4 people renewang maren alexeid badripk
	Proportionally more deleterious genetic variation in European than in African populations [My Copy] Nature, Vol. 451, No. 7181. (21 February 2008), pp. 994-997. by Kirk E. Lohmueller, Amit R. Indap, Steffen Schmidt, et al.Adam R. Boyko, Ryan D. Hernandez, Melissa J. Hubisz, John J. Sninsky, Thomas J. White, Shamil R. Sunyaev, Rasmus Nielsen, Andrew G. Clark, Carlos D. Bustamante posted to popgen selection by djkt on 2008-02-21 19:21:34 as along with 4 people and 1 group alexeid caseybrown mailund ramensky Fasting, food and evolution
	Population Genetics of Polymorphism and Divergence Under Fluctuating Selection [My Copy] Genetics, Vol. 178, No. 1. (1 January 2008), pp. 325-337. by Emilia Huerta-Sanchez, Rick Durrett, Carlos D. Bustamante posted to popgen selection by djkt on 2008-01-18 01:53:37 as along with 1 person emptyhb
	Evolutionary and Biomedical Insights from the Rhesus Macaque Genome [My Copy] Science, Vol. 316, No. 5822. (13 April 2007), pp. 222-234. by Rhesus Macaque Genome Sequencing and Analysis Consortium, Richard A. Gibbs, Jeffrey Rogers, et al.Michael G. Katze, Roger Bumgarner, George M. Weinstock, Elaine R. Mardis, Karin A. Remington, Robert L. Strausberg, J. Craig Venter, Richard K. Wilson, Mark A. Batzer, Carlos D. Bustamante, Evan E. Eichler, Matthew W. Hahn, Ross C. Hardison, Kateryna D. Makova, Webb Miller, Aleksandar Milosavljevic, Robert E. Palermo, Adam Siepel, James M. Sikela, Tony Attaway, Stephanie Bell, Kelly E. Bernard, Christian J. Buhay, Mimi N. Chandrabose, Marvin Dao, Clay Davis, Kimberly D. Delehaunty, Yan Ding, Huyen H. Dinh, Shannon Dugan-Rocha, Lucinda A. Fulton, Ramatu A. Gabisi, Toni T. Garner, Jennifer Godfrey, Alicia C. Hawes, Judith Hernandez, Sandra Hines, Michael Holder, Jennifer Hume, Shalini N. Jhangiani, Vandita Joshi, Ziad M. Khan, Ewen F. Kirkness, Andrew Cree, R. Gerald Fowler, Sandra Lee, Lora R. Lewis, Zhangwan Li, Yih-shin Liu, Stephanie M. Moore, Donna Muzny, Lynne V. Nazareth, Dinh N. Ngo, Geoffrey O. Okwuonu, Grace Pai, David Parker, Heidie A. Paul, Cynthia Pfannkoch, Craig S. Pohl, Yu-Hui Rogers, San J. Ruiz, Aniko Sabo, Jireh Santibanez, Brian W. Schneider, Scott M. Smith, Erica Sodergren, Amanda F. Svatek, Teresa R. Utterback, Selina Vattathil, Wesley Warren, Courtney S. White, Asif T. Chinwalla, Yucheng Feng, Aaron L. Halpern, LaDeana W. Hillier, Xiaoqiu Huang, Pat Minx, Joanne O. Nelson, Kymberlie H. Pepin, Xiang Qin, Granger G. Sutton, Eli Venter, Brian P. Walenz, John W. Wallis, Kim C. Worley, Shiaw-Pyng Yang, Steven M. Jones, Marco A. Marra, Mariano Rocchi, Jacqueline E. Schein, Robert Baertsch, Laura Clarke, Miklos Csuros, Jarret Glasscock, R. Alan Harris, Paul Havlak, Andrew R. Jackson, Huaiyang Jiang, Yue Liu, David N. Messina, Yufeng Shen, Henry X. Song, Todd Wylie, Lan Zhang, Ewan Birney, Kyudong Han, Miriam K. Konkel, Jungnam Lee, Arian F. A. Smit, Brygg Ullmer, Hui Wang, Jinchuan Xing, Richard Burhans, Ze Cheng, John E. Karro, Jian Ma, Brian Raney, Xinwei She, Michael J. Cox, Jeffery P. Demuth, Laura J. Dumas, Sang-Gook Han, Janet Hopkins, Anis Karimpour-Fard, Young H. Kim, Jonathan R. Pollack, Tomas Vinar, Charles Addo-Quaye, Jeremiah Degenhardt, Alexandra Denby, Melissa J. Hubisz, Amit Indap, Carolin Kosiol, Bruce T. Lahn, Heather A. Lawson, Alison Marklein, Rasmus Nielsen, Eric J. Vallender, Andrew G. Clark, Betsy Ferguson, Ryan D. Hernandez, Kashif Hirani, Hildegard Kehrer-Sawatzki, Jessica Kolb, Shobha Patil, Ling-Ling Pu, Yanru Ren, David G. Smith, David A. Wheeler, Ian Schenck, Edward V. Ball, Rui Chen, David N. Cooper, Belinda Giardine, Fan Hsu, W. James Kent, Arthur Lesk, David L. Nelson, William E. O'Brien, Kay Prufer, Peter D. Stenson, James C. Wallace, Hui Ke, Xiao-Ming Liu, Peng Wang, Andy P. Xiang, Fan Yang, Galt P. Barber, David Haussler, Donna Karolchik, Andy D. Kern, Robert M. Kuhn, Kayla E. Smith, Ann S. Zwieg posted to genome primates by djkt on 2007-04-13 18:30:18 as along with 7 people and 4 groups ramonvidal taroleo bb805 dchughes stajich hpaces Garamonfok Bioinformatics G4ID Genetics-of-Gambling Mycology
	Demographic Histories and Patterns of Linkage Disequilibrium in Chinese and Indian Rhesus Macaques [My Copy] Science, Vol. 316, No. 5822. (13 April 2007), pp. 240-243. by Ryan D. Hernandez, Melissa J. Hubisz, David A. Wheeler, et al.David G. Smith, Betsy Ferguson, Jeffrey Rogers, Lynne Nazareth, Amit Indap, Traci Bourquin, John Mcpherson, Donna Muzny, Richard Gibbs, Rasmus Nielsen, Carlos D. Bustamante posted to popgen primates by djkt on 2007-04-13 18:28:47 as along with 2 people and 2 groups dchughes usagi-kirin G4ID Genetics-of-Gambling
	Ascertainment bias in studies of human genome-wide polymorphism. [My Copy] Genome Res, Vol. 15, No. 11. (November 2005), pp. 1496-1502. by A. G. Clark, M. J. Hubisz, C. D. Bustamante, S. H. Williamson, R. Nielsen posted to design popgen snps by djkt on 2006-08-04 01:23:20 as along with 4 people and 1 group stevanspringer chrn ashandanj jermth FAB-lab
	Natural selection on protein-coding genes in the human genome [My Copy] Nature, Vol. 437, No. 7062. (20 October 2005), pp. 1153-1157. by Carlos D. Bustamante, Adi Fledel-Alon, Scott Williamson, et al.Rasmus Nielsen, Melissa Todd Hubisz, Stephen Glanowski, David M. Tanenbaum, Thomas J. White, John J. Sninsky, Ryan D. Hernandez, Daniel Civello, Mark D. Adams, Michele Cargill, Andrew G. Clark posted to acceleration evolution msa proteins selection by djkt on 2006-08-03 23:42:14 as along with 26 people and 5 groups rvosa JAShapiro tomhebbron VGreiff ilyashl athma provero jimithystok gjuggler renewang jo_davies stevanspringer operon jwortman aprasad dayjm balajis marcius dpollard hdopazo JBEgwa01 ramensky Garamonfok iris42 dmc shoshin EisenLab FAB-lab BioinfoCIPF SGU-CIPF Durbin group
	The cost of inbreeding in Arabidopsis. [My Copy] Nature, Vol. 416, No. 6880. (4 April 2002), pp. 531-534. by C. D. Bustamante, R. Nielsen, S. A. Sawyer, K. M. Olsen, M. D. Purugganan, D. L. Hartl posted to evolution popgen selection by djkt on 2006-08-03 23:26:48 as along with 2 people and 1 group emptyhb dpollard EisenLab

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evolution	392
expression	261
popgen	217
selection	130
snps	127
proteins	117
human	114
metagenomics	107
microbes	106
tf	100
sequencing	97
phylogenetics	87
duplication	85
rna	85
primates	84
association	75
review	70
conservation	64
fly	64
msa	59
acceleration	57
chromatin	56
epigenetics	56
recombination	52
sv	52
yeast	48
qtl	46
indel	44
arrays	44
ecology	41
development	39
motif	39
annotation	37
chromosome	37
alignment	35
diversity	34
rodents	32
prediction	32
genome	31
mtp	31
mammals	30
repeats	27
testing	27
divergence	24
disease	24
demography	23
splicing	23
histone	23
chip-chip	21
mutation	21
sysbio	20
variation	20
methylation	19
simulation	18
virus	18
molclock	18
admixture	17
imprinting	16
bgc	16
bayesian	15
microbiome	15
bias	14
speciation	14
estimation	13
clustering	13
nucleosome	13
gccontent	13
stemcells	13
db	12
genotyping	12
hmm	11
assembly	11
enhancer	11
intron	11
structure	10
sex	10
cpg	10
hiv	10
domestication	10
cancer	9
promoter	9
migration	9
model_selection	9
haplotype	8
design	8
environment	8
dog	7
isochores	7
resampling	7
community	7
schizophrenia	6
lactation	6
geography	6
replication	6
bacteria	6
brain	6
computing	5
foxp2	5
ancient_dna	5
worm	5
power	4
reconstruction	4
model	4
kmer	4
immunity	4
pathogen	4
gene-transfer	3
plants	3
go	3
synteny	3
bioinfo	3
theory	3
vertebrates	3
pax6	3
viualization	3
drift	3
ctcf	3
neanderthal	3
coalescent	2
correlation	2
ultras	2
signalling	2
diet	2
fish	2
heterochromatin	2
cardiovascular	2
metabolomics	2
network	2
classification	2
species_abundance	2
ethics	2
mixture	2
acertainment	2
novel	2
epistasis	2
aging	2
epidemiology	1
vision	1
workflow	1
distribution	1
lineage_sorting	1
svd	1
transgenic	1
dimension_reduction	1
pca	1
birds	1
mirna	1
centromeres	1
meiosis	1
archaea	1
genome_size	1
enzymes	1
teaching	1
roc	1
teeth	1
lrt	1
phosphorylation	1
localization	1
proteomics	1
heart	1
utr	1
operons	1
gene_therapy	1
metabolism	1
microsatellite	1
repeated_measures	1
eukaryotes	1
reelin	1
placenta	1
lactase	1
olfaction	1
codon	1
archeology	1
ptmass	1
dna	1
forensics	1

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