djkt's Clark:AG [20 articles] Export

Recent papers posted to djkt's library by the author Clark:AG. You can also see everyone's Clark:AG.

	Population Genomic Inferences from Sparse High-Throughput Sequencing of Two Populations of Drosophila melanogaster [My Copy] Genome Biol Evol In Genome Biol Evol, Vol. 2009, No. 0. (10 December 2009), pp. 439-a-455. by Timothy B. Sackton, Rob J. Kulathinal, Casey M. Bergman, et al.Aaron R. Quinlan, Erik B. Dopman, Mauricio Carneiro, Gabor T. Marth, Daniel L. Hartl, Andrew G. Clark posted to sequencing popgen fly by djkt on 2009-12-10 19:45:24 as along with 3 people natstreet n00c druvus
	Targets of Balancing Selection in the Human Genome [My Copy] Mol Biol Evol In Mol Biol Evol, Vol. 26, No. 12. (1 December 2009), pp. 2755-2764. by Aida M. Andres, Melissa J. Hubisz, Amit Indap, et al.Dara G. Torgerson, Jeremiah D. Degenhardt, Adam R. Boyko, Ryan N. Gutenkunst, Thomas J. White, Eric D. Green, Carlos D. Bustamante, Andrew G. Clark, Rasmus Nielsen posted to selection proteins human by djkt on 2009-11-11 00:39:20 as along with 3 people and 1 group qayub sameersoi aprasad Journal picks
	Finding the missing heritability of complex diseases [My Copy] Nature In Nature, Vol. 461, No. 7265. (08 October 2009), pp. 747-753. by Teri A. Manolio, Francis S. Collins, Nancy J. Cox, et al.David B. Goldstein, Lucia A. Hindorff, David J. Hunter, Mark I. McCarthy, Erin M. Ramos, Lon R. Cardon, Aravinda Chakravarti, Judy H. Cho, Alan E. Guttmacher, Augustine Kong, Leonid Kruglyak, Elaine Mardis, Charles N. Rotimi, Montgomery Slatkin, David Valle, Alice S. Whittemore, Michael Boehnke, Andrew G. Clark, Evan E. Eichler, Greg Gibson, Jonathan L. Haines, Trudy F. C. Mackay, Steven A. McCarroll, Peter M. Visscher posted to review popgen disease association by djkt on 2009-10-07 21:25:36 as along with 19 people and 1 group xingxu talponer misonneh virolog timflutre daveGerrard leemachado lp2 natstreet ns6 balajis jclau liqbbi josepe daforerog fenghezi rdiaz carolep merpublic Journal picks
	Evolutionary Processes Acting on Candidate cis-Regulatory Regions in Humans Inferred from Patterns of Polymorphism and Divergence [My Copy] PLoS Genet, Vol. 5, No. 8. (7 August 2009), e1000592. by Dara G. Torgerson, Adam R. Boyko, Ryan D. Hernandez, et al.Amit Indap, Xiaolan Hu, Thomas J. White, John J. Sninsky, Michele Cargill, Mark D. Adams, Carlos D. Bustamante, Andrew G. Clark posted to evolution expression human popgen selection by djkt on 2009-08-07 17:13:34 as along with 5 people and 3 groups emptyhb cisevol gdb SeaBird qayub cis-regulatory-evolution BergmanLab Journal picks
	Strong Evidence for Lineage and Sequence Specificity of Substitution Rates and Patterns in Drosophila [My Copy] Mol Biol Evol, Vol. 26, No. 7. (1 July 2009), pp. 1591-1605. by Nadia D. Singh, Peter F. Arndt, Andrew G. Clark, Charles F. Aquadro posted to bias evolution fly molclock mutation selection by djkt on 2009-06-09 19:09:51 as along with 5 people operon michaelbarton katholt bmajoros benjaminsb
	Darwinian and demographic forces affecting human protein coding genes [My Copy] Genome Research, Vol. 19, No. 5. (1 May 2009), pp. 838-849. by Rasmus Nielsen, Melissa J. Hubisz, Ines Hellmann, et al.Dara Torgerson, Aida M. Andrés, Anders Albrechtsen, Ryan Gutenkunst, Mark D. Adams, Michele Cargill, Adam Boyko, Amit Indap, Carlos D. Bustamante, Andrew G. Clark posted to demography human popgen proteins selection by djkt on 2009-05-02 02:46:50 as along with 3 people operon daveGerrard psique
	Methods for Human Demographic Inference Using Haplotype Patterns From Genome-wide SNP Data [My Copy] Genetics (2 March 2009), genetics.108.099275. by Kirk E. Lohmueller, Carlos D. Bustamante, Andrew G. Clark posted to demography haplotype popgen snps by djkt on 2009-04-29 22:38:01 as along with 2 people sameersoi ilyashl
	Population genetic analysis of shotgun assemblies of genomic sequences from multiple individuals [My Copy] Genome Res., Vol. 18, No. 7. (1 July 2008), pp. 1020-1029. by Ines Hellmann, Yuan Mang, Zhiping Gu, et al.Peter Li, de La, Andrew G. Clark, Rasmus Nielsen posted to human popgen sequencing by djkt on 2008-07-01 19:13:57 as along with 5 people jasontsai APRegier balicea Neeperando serdarbozdag
	Independent effects of cis- and trans-regulatory variation on gene expression in Drosophila melanogaster [My Copy] Genetics (3 February 2008), genetics.107.082032. by Patricia J. Wittkopp, Belinda K. Haerum, Andrew G. Clark posted to expression fly popgen qtl by djkt on 2008-04-02 05:07:15 as along with 5 people and 3 groups brant stajich mimulus_99 dpollard caseybrown EisenLab cis-regulatory-evolution RockmanLab
	Regulatory changes underlying expression differences within and between Drosophila species. [My Copy] Nat Genet (17 February 2008) by Patricia J J. Wittkopp, Belinda K K. Haerum, Andrew G G. Clark posted to evolution expression fly by djkt on 2008-02-27 19:26:20 as along with 4 people athma brant mimulus_99 gjuggler
	Proportionally more deleterious genetic variation in European than in African populations [My Copy] Nature, Vol. 451, No. 7181. (21 February 2008), pp. 994-997. by Kirk E. Lohmueller, Amit R. Indap, Steffen Schmidt, et al.Adam R. Boyko, Ryan D. Hernandez, Melissa J. Hubisz, John J. Sninsky, Thomas J. White, Shamil R. Sunyaev, Rasmus Nielsen, Andrew G. Clark, Carlos D. Bustamante posted to popgen selection by djkt on 2008-02-21 19:21:34 as along with 4 people and 1 group alexeid caseybrown mailund ramensky Fasting, food and evolution
	Discovery of functional elements in 12 Drosophila genomes using evolutionary signatures. [My Copy] Nature, Vol. 450, No. 7167. (8 November 2007), pp. 219-232. by A. Stark, M. F. Lin, P. Kheradpour, et al.J. S. Pedersen, L. Parts, J. W. Carlson, M. A. Crosby, M. D. Rasmussen, S. Roy, A. N. Deoras, J. G. Ruby, J. Brennecke, , , E. Hodges, A. S. Hinrichs, A. Caspi, B. Paten, S. W. Park, M. V. Han, M. L. Maeder, B. J. Polansky, B. E. Robson, S. Aerts, J. van Helden, B. Hassan, D. G. Gilbert, D. A. Eastman, M. Rice, M. Weir, M. W. Hahn, Y. Park, C. N. Dewey, L. Pachter, W. J. Kent, D. Haussler, E. C. Lai, D. P. Bartel, G. J. Hannon, T. C. Kaufman, M. B. Eisen, A. G. Clark, D. Smith, S. E. Celniker, W. M. Gelbart, M. Kellis posted to conservation fly by djkt on 2007-11-07 21:22:55 as along with 21 people and 3 groups heliopais anphony kieran101 Neeperando pradiptaray rouault druvus operon tmmurali timflutre stajich lp2 cabbagezs nklee hpaces roys caseybrown gjuggler shuzhens PetrovLab cisevol microRNA Mycology Drosophila-Genetics-Genomics-2008
	Evolutionary and Biomedical Insights from the Rhesus Macaque Genome [My Copy] Science, Vol. 316, No. 5822. (13 April 2007), pp. 222-234. by Rhesus Macaque Genome Sequencing and Analysis Consortium, Richard A. Gibbs, Jeffrey Rogers, et al.Michael G. Katze, Roger Bumgarner, George M. Weinstock, Elaine R. Mardis, Karin A. Remington, Robert L. Strausberg, J. Craig Venter, Richard K. Wilson, Mark A. Batzer, Carlos D. Bustamante, Evan E. Eichler, Matthew W. Hahn, Ross C. Hardison, Kateryna D. Makova, Webb Miller, Aleksandar Milosavljevic, Robert E. Palermo, Adam Siepel, James M. Sikela, Tony Attaway, Stephanie Bell, Kelly E. Bernard, Christian J. Buhay, Mimi N. Chandrabose, Marvin Dao, Clay Davis, Kimberly D. Delehaunty, Yan Ding, Huyen H. Dinh, Shannon Dugan-Rocha, Lucinda A. Fulton, Ramatu A. Gabisi, Toni T. Garner, Jennifer Godfrey, Alicia C. Hawes, Judith Hernandez, Sandra Hines, Michael Holder, Jennifer Hume, Shalini N. Jhangiani, Vandita Joshi, Ziad M. Khan, Ewen F. Kirkness, Andrew Cree, R. Gerald Fowler, Sandra Lee, Lora R. Lewis, Zhangwan Li, Yih-shin Liu, Stephanie M. Moore, Donna Muzny, Lynne V. Nazareth, Dinh N. Ngo, Geoffrey O. Okwuonu, Grace Pai, David Parker, Heidie A. Paul, Cynthia Pfannkoch, Craig S. Pohl, Yu-Hui Rogers, San J. Ruiz, Aniko Sabo, Jireh Santibanez, Brian W. Schneider, Scott M. Smith, Erica Sodergren, Amanda F. Svatek, Teresa R. Utterback, Selina Vattathil, Wesley Warren, Courtney S. White, Asif T. Chinwalla, Yucheng Feng, Aaron L. Halpern, LaDeana W. Hillier, Xiaoqiu Huang, Pat Minx, Joanne O. Nelson, Kymberlie H. Pepin, Xiang Qin, Granger G. Sutton, Eli Venter, Brian P. Walenz, John W. Wallis, Kim C. Worley, Shiaw-Pyng Yang, Steven M. Jones, Marco A. Marra, Mariano Rocchi, Jacqueline E. Schein, Robert Baertsch, Laura Clarke, Miklos Csuros, Jarret Glasscock, R. Alan Harris, Paul Havlak, Andrew R. Jackson, Huaiyang Jiang, Yue Liu, David N. Messina, Yufeng Shen, Henry X. Song, Todd Wylie, Lan Zhang, Ewan Birney, Kyudong Han, Miriam K. Konkel, Jungnam Lee, Arian F. A. Smit, Brygg Ullmer, Hui Wang, Jinchuan Xing, Richard Burhans, Ze Cheng, John E. Karro, Jian Ma, Brian Raney, Xinwei She, Michael J. Cox, Jeffery P. Demuth, Laura J. Dumas, Sang-Gook Han, Janet Hopkins, Anis Karimpour-Fard, Young H. Kim, Jonathan R. Pollack, Tomas Vinar, Charles Addo-Quaye, Jeremiah Degenhardt, Alexandra Denby, Melissa J. Hubisz, Amit Indap, Carolin Kosiol, Bruce T. Lahn, Heather A. Lawson, Alison Marklein, Rasmus Nielsen, Eric J. Vallender, Andrew G. Clark, Betsy Ferguson, Ryan D. Hernandez, Kashif Hirani, Hildegard Kehrer-Sawatzki, Jessica Kolb, Shobha Patil, Ling-Ling Pu, Yanru Ren, David G. Smith, David A. Wheeler, Ian Schenck, Edward V. Ball, Rui Chen, David N. Cooper, Belinda Giardine, Fan Hsu, W. James Kent, Arthur Lesk, David L. Nelson, William E. O'Brien, Kay Prufer, Peter D. Stenson, James C. Wallace, Hui Ke, Xiao-Ming Liu, Peng Wang, Andy P. Xiang, Fan Yang, Galt P. Barber, David Haussler, Donna Karolchik, Andy D. Kern, Robert M. Kuhn, Kayla E. Smith, Ann S. Zwieg posted to genome primates by djkt on 2007-04-13 18:30:18 as along with 7 people and 4 groups ramonvidal taroleo bb805 dchughes stajich hpaces Garamonfok Bioinformatics G4ID Genetics-of-Gambling Mycology
	Thrice out of Africa: ancient and recent expansions of the honey bee, Apis mellifera. [My Copy] Science, Vol. 314, No. 5799. (27 October 2006), pp. 642-645. by C. W. Whitfield, S. K. Behura, S. H. Berlocher, et al.A. G. Clark, J. S. Johnston, W. S. Sheppard, D. R. Smith, A. V. Suarez, D. Weaver, N. D. Tsutsui posted to evolution popgen by djkt on 2006-11-02 19:11:44 as
	Inferring Nonneutral Evolution from Human-Chimp-Mouse Orthologous Gene Trios [My Copy] Science, Vol. 302, No. 5652. (12 December 2003), pp. 1960-1963. by Andrew G. Clark, Stephen Glanowski, Rasmus Nielsen, et al.Paul D. Thomas, Anish Kejariwal, Melissa A. Todd, David M. Tanenbaum, Daniel Civello, Fu Lu, Brian Murphy, Steve Ferriera, Gary Wang, Xianqgun Zheng, Thomas J. White, John J. Sninsky, Mark D. Adams, Michele Cargill posted to evolution primates proteins rodents selection by djkt on 2006-08-04 01:37:25 as along with 9 people and 1 group clearbluespring athma paszkows provero renewang ejeffery gjuggler hdopazo Ema BioinfoCIPF
	Ascertainment bias in studies of human genome-wide polymorphism. [My Copy] Genome Res, Vol. 15, No. 11. (November 2005), pp. 1496-1502. by A. G. Clark, M. J. Hubisz, C. D. Bustamante, S. H. Williamson, R. Nielsen posted to design popgen snps by djkt on 2006-08-04 01:23:20 as along with 4 people and 1 group stevanspringer chrn ashandanj jermth FAB-lab
	A Scan for Positively Selected Genes in the Genomes of Humans and Chimpanzees [My Copy] PLoS Biol, Vol. 3, No. 6. (3 May 2005), e170. by Rasmus Nielsen, Carlos Bustamante, Andrew G. Clark, et al.Stephen Glanowski, Timothy B. Sackton, Melissa J. Hubisz, Adi Fledel-Alon, David M. Tanenbaum, Daniel Civello, Thomas J. White, Sninsky, Mark D. Adams, Michele Cargill posted to evolution primates proteins selection by djkt on 2006-08-04 00:46:39 as along with 9 people and 3 groups provero gjuggler renewang stevanspringer jwortman bpb penka hdopazo iris42 Nie FAB-lab BioinfoCIPF
	Identification by full-coverage array CGH of human DNA copy number increases relative to chimpanzee and gorilla. [My Copy] Genome Res, Vol. 16, No. 2. (February 2006), pp. 173-181. by G. M. Wilson, S. Flibotte, P. I. Missirlis, et al.M. A. Marra, S. Jones, K. Thornton, A. G. Clark, R. A. Holt posted to indel msa popgen primates by djkt on 2006-08-03 23:48:39 as
	Natural selection on protein-coding genes in the human genome [My Copy] Nature, Vol. 437, No. 7062. (20 October 2005), pp. 1153-1157. by Carlos D. Bustamante, Adi Fledel-Alon, Scott Williamson, et al.Rasmus Nielsen, Melissa Todd Hubisz, Stephen Glanowski, David M. Tanenbaum, Thomas J. White, John J. Sninsky, Ryan D. Hernandez, Daniel Civello, Mark D. Adams, Michele Cargill, Andrew G. Clark posted to acceleration evolution msa proteins selection by djkt on 2006-08-03 23:42:14 as along with 26 people and 5 groups rvosa JAShapiro tomhebbron VGreiff ilyashl athma provero jimithystok gjuggler renewang jo_davies stevanspringer operon jwortman aprasad dayjm balajis marcius dpollard hdopazo JBEgwa01 ramensky Garamonfok iris42 dmc shoshin EisenLab FAB-lab BioinfoCIPF SGU-CIPF Durbin group
	Genomics of the evolutionary process [My Copy] Trends in Ecology & Evolution In Twenty years of TREE - part I, Vol. 21, No. 6. (June 2006), pp. 316-321. by Andrew G. Clark posted to evolution msa review selection by djkt on 2006-08-03 21:50:04 as along with 6 people and 4 groups dpollard balicea dchughes rabu brettc sunye EisenLab G4ID evo-devo Genetics-of-Gambling

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evolution	395
expression	266
popgen	222
selection	130
snps	129
proteins	117
human	116
metagenomics	108
microbes	108
tf	100
sequencing	100
phylogenetics	88
rna	86
duplication	85
primates	85
association	77
review	70
fly	66
conservation	64
msa	59
acceleration	57
chromatin	57
epigenetics	56
sv	54
recombination	53
yeast	48
qtl	46
arrays	44
indel	44
ecology	41
motif	40
development	39
chromosome	38
annotation	37
alignment	36
diversity	34
rodents	32
prediction	32
mtp	31
genome	31
mammals	30
testing	28
repeats	27
disease	26
divergence	25
demography	24
splicing	24
histone	23
chip-chip	21
mutation	21
variation	20
sysbio	20
methylation	19
molclock	18
simulation	18
imprinting	18
virus	18
admixture	17
bgc	16
speciation	15
microbiome	15
bayesian	15
bias	15
estimation	14
clustering	13
hmm	13
nucleosome	13
stemcells	13
gccontent	13
genotyping	12
db	12
enhancer	11
intron	11
assembly	11
structure	10
hiv	10
sex	10
domestication	10
cpg	10
migration	10
cancer	9
haplotype	9
promoter	9
model_selection	9
environment	8
design	8
community	7
resampling	7
dog	7
isochores	7
schizophrenia	6
bacteria	6
replication	6
brain	6
geography	6
lactation	6
foxp2	5
worm	5
ancient_dna	5
computing	5
immunity	4
reconstruction	4
model	4
power	4
pathogen	4
kmer	4
diet	3
correlation	3
plants	3
pax6	3
ctcf	3
drift	3
neanderthal	3
gene-transfer	3
go	3
viualization	3
vertebrates	3
theory	3
bioinfo	3
synteny	3
ethics	2
mixture	2
classification	2
aging	2
coalescent	2
acertainment	2
signalling	2
cardiovascular	2
novel	2
ultras	2
network	2
metabolomics	2
heterochromatin	2
fish	2
species_abundance	2
epistasis	2
utr	1
pca	1
transgenic	1
centromeres	1
meiosis	1
archaea	1
mirna	1
enzymes	1
genome_size	1
operons	1
roc	1
lactase	1
lrt	1
lineage_sorting	1
heart	1
microsatellite	1
metabolism	1
eukaryotes	1
reelin	1
birds	1
dimension_reduction	1
epidemiology	1
forensics	1
ptmass	1
repeated_measures	1
archeology	1
codon	1
olfaction	1
teaching	1
placenta	1
proteomics	1
teeth	1
phosphorylation	1
dna	1
gene_therapy	1
localization	1
vision	1
workflow	1
distribution	1
svd	1

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