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djkt's Gerstein [8 articles]

Recent papers posted to djkt's library by the author Gerstein. You can also see everyone's Gerstein.
  • Modeling ChIP Sequencing In Silico with Applications
    PLoS Comput Biol, Vol. 4, No. 8. (2008), e1000158.
    by Zhengdong D Zhang, Joel Rozowsky, Michael Snyder, Joseph Chang, Mark Gerstein
    posted to chip-chip sequencing by djkt on 2008-08-22 18:20:29 as ** along with 4 people kengg Stew gdb caseybrown
  • The Transcriptional Landscape of the Yeast Genome Defined by RNA Sequencing
    Science (1 May 2008), 1158441.
    by Ugrappa Nagalakshmi, Zhong Wang, Karl Waern, Chong Shou, Debasish Raha, Mark Gerstein, Michael Snyder
    posted to expression sequencing yeast by djkt on 2008-06-10 22:31:03 as ** along with 14 people and 1 group urgi chad_davis stajich semrich caseybrown gjuggler Retchless biomcgary GeeSharpMinor mapplab faion bpcusack jyuh shurjo Berkeley Mycology
  • Systematic evaluation of variability in ChIP-chip experiments using predefined DNA targets
    Genome Res. (7 February 2008), gr.7080508.
    by David S Johnson, Wei Li, Benjamin D Gordon, Arindam Bhattacharjee, Bo Curry, Jayati Ghosh, Leonardo Brizuela, Jason S Carroll, Myles Brown, Paul Flicek, Christopher M Koch, Ian Dunham, Mark Bieda, Xiaoqin Xu, Peggy J Farnham, Philipp Kapranov, David A Nix, Thomas R Gingeras, Xinmin Zhang, Heather Holster, Nan Jiang, Roland Green, Jun S Song, Scott A Mccuine, Elizabeth Anton, Loan Nguyen, Nathan D Trinklein, Zhen Ye, Keith Ching, David Hawkins, Bing Ren, Peter C Scacheri, Joel Rozowsky, Alexander Karpikov, Ghia Euskirchen, Sherman Weissman, Mark Gerstein, Michael Snyder, Annie Yang, Zarmik Moqtaderi, Heather Hirsch, Hennady P Shulha, Yutao Fu, Zhiping Weng, Kevin Struhl, Richard M Myers, Jason D Lieb, Shirley X Liu
    posted to chip-chip by djkt on 2008-02-29 23:42:33 as ** along with 11 people and 2 groups jfr kengg xiaobeizhao cabbagezs idonaldson caseybrown magusina lp2 stajich gracio gdb BergmanLab Berkeley Mycology
  • Systematic analysis of transcribed loci in ENCODE regions using RACE sequencing reveals extensive transcription in the human genome
    Genome Biology, Vol. 9 (03 January 2008), R3.
    by Jia Q Wu, Jiang Du, Joel Rozowsky, Zhengdong Zhang, Alexander E Urban, Ghia Euskirchen, Sherman Weissman, Mark Gerstein, Michael Snyder
    posted to annotation expression by djkt on 2008-01-12 17:05:20 as **
  • Divergence of Transcription Factor Binding Sites Across Related Yeast Species
    Science, Vol. 317, No. 5839. (10 August 2007), pp. 815-819.
    by Anthony R Borneman, Tara A Gianoulis, Zhengdong D Zhang, Haiyuan Yu, Joel Rozowsky, Michael R Seringhaus, Lu Y Wang, Mark Gerstein, Michael Snyder
    posted to acceleration chip-chip evolution expression tf yeast by djkt on 2007-08-13 20:04:07 as ** along with 17 people and 2 groups bryankr aalibes chad_davis dpollard mikaelhuss lusk cjeans sujaikumar zwang GustavoLacerda Jporci maximilianh cisevol njcitulike emptyhb nklee anka EisenLab cis-regulatory-evolution
  • The DART classification of unannotated transcription within the ENCODE regions: Associating transcription with known and novel loci
    Genome Res., Vol. 17, No. 6. (1 June 2007), pp. 732-745.
    by Joel S Rozowsky, Daniel Newburger, Fred Sayward, Jiaqian Wu, Greg Jordan, Jan O Korbel, Ugrappa Nagalakshmi, Jin Yang, Deyou Zheng, Roderic Guigo, Thomas R Gingeras, Sherman Weissman, Perry Miller, Michael Snyder, Mark B Gerstein
    posted to annotation expression by djkt on 2007-06-14 01:03:10 as ** along with 4 people and 1 group olympos ghattem jasonflannick gjuggler Bioinformatics
  • Integrated analysis of experimental data sets reveals many novel promoters in 1% of the human genome
    Genome Res., Vol. 17, No. 6. (1 June 2007), pp. 720-731.
    by Nathan D Trinklein, Ulas Karaoz, Jiaqian Wu, Anason Halees, Force, Patrick J Collins, Deyou Zheng, Zhengdong D Zhang, Mark B Gerstein, Michael Snyder, Richard M Myers, Zhiping Weng
    posted to expression tf by djkt on 2007-06-14 01:02:17 as ** along with 5 people jyuh olympos cjeans Garamonfok jasonflannick
  • A supervised hidden Markov model framework for efficiently segmenting tiling array data in transcriptional and ChIP-chip experiments: systematically incorporating validated biological knowledge.
    Bioinformatics (12 October 2006)
    by Jiang Du, Joel S S Rozowsky, Jan O O Korbel, Zhengdong D D Zhang, Thomas E E Royce, Martin H H Schultz, Michael Snyder, Mark Gerstein
    posted to arrays chip-chip hmm prediction by djkt on 2006-12-02 16:49:13 as *** along with 7 people and 2 groups miguel tuck eckart_bindewald SeungjoonOh blobbybirdman inesdesantiago xingxu Bioinformatics UH - Computational Biology
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