djkt's Siepel:A [10 articles] Export

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	Phylogenomics of primates and their ancestral populations [My Copy] Genome Research, Vol. 19, No. 11. (3 November 2009), pp. 1929-1941. by Adam Siepel posted to review primates popgen phylogenetics evolution by djkt on 2009-11-02 19:00:34 as along with 4 people and 1 group sameersoi rvosa aprasad merpublic FAB-lab
	Evolutionary History Reconstruction for Mammalian Complex Gene Clusters [My Copy] Journal of Computational Biology, Vol. 16, No. 8. (August 2009), pp. 1051-1070. by Yu Zhang, Giltae Song, Tomáš Vinař, Eric D. Green, Adam Siepel, Webb Miller posted to reconstruction proteins evolution duplication chromosome by djkt on 2009-08-21 01:03:26 as
	Patterns of Positive Selection in Six Mammalian Genomes [My Copy] PLoS Genet, Vol. 4, No. 8. (1 August 2008), e1000144. by Carolin Kosiol, Tomáš Vinař, Rute R. da Fonseca, et al.Melissa J. Hubisz, Carlos D. Bustamante, Rasmus Nielsen, Adam Siepel posted to evolution mammals proteins selection by djkt on 2008-08-01 18:26:18 as along with 11 people Garamonfok daveGerrard ilyashl diamantis renewang skembel madreach bpcusack gjuggler cabbagesofdoom hdopazo
	Analyses of deep mammalian sequence alignments and constraint predictions for 1% of the human genome [My Copy] Genome Res., Vol. 17, No. 6. (1 June 2007), pp. 760-774. by Elliott H. Margulies, Gregory M. Cooper, George Asimenos, et al.Daryl J. Thomas, Colin N. Dewey, Adam Siepel, Ewan Birney, Damian Keefe, Ariel S. Schwartz, Minmei Hou, James Taylor, Sergey Nikolaev, Juan I. Montoya-Burgos, Ari Loytynoja, Simon Whelan, Fabio Pardi, Tim Massingham, James B. Brown, Peter Bickel, Ian Holmes, James C. Mullikin, Abel Ureta-Vidal, Benedict Paten, Eric A. Stone, Kate R. Rosenbloom, James W. Kent, Gerard G. Bouffard, Xiaobin Guan, Nancy F. Hansen, Jacquelyn R. Idol, Valerie V. Maduro, Baishali Maskeri, Jennifer C. Mcdowell, Morgan Park, Pamela J. Thomas, Alice C. Young, Robert W. Blakesley, Donna M. Muzny, Erica Sodergren, David A. Wheeler, Kim C. Worley, Huaiyang Jiang, George M. Weinstock, Richard A. Gibbs, Tina Graves, Robert Fulton, Elaine R. Mardis, Richard K. Wilson, Michele Clamp, James Cuff, Sante Gnerre, David B. Jaffe, Jean L. Chang, Kerstin Lindblad-Toh, Eric S. Lander, Angie Hinrichs, Heather Trumbower, Hiram Clawson, Ann Zweig, Robert M. Kuhn, Galt Barber, Rachel Harte, Donna Karolchik, Matthew A. Field, Richard A. Moore, Carrie A. Matthewson, Jacqueline E. Schein, Marco A. Marra, Stylianos E. Antonarakis, Serafim Batzoglou, Nick Goldman, Ross Hardison, David Haussler, Webb Miller, Lior Pachter, Eric D. Green, Arend Sidow posted to annotation conservation msa by djkt on 2007-06-14 01:05:24 as along with 11 people and 5 groups daveGerrard polivares timflutre aprasad dpollard dchughes AaronDarling ghattem Garamonfok gjuggler elfar BergmanLab Bioinformatics EisenLab G4ID Genetics-of-Gambling
	Evolutionary and Biomedical Insights from the Rhesus Macaque Genome [My Copy] Science, Vol. 316, No. 5822. (13 April 2007), pp. 222-234. by Rhesus Macaque Genome Sequencing and Analysis Consortium, Richard A. Gibbs, Jeffrey Rogers, et al.Michael G. Katze, Roger Bumgarner, George M. Weinstock, Elaine R. Mardis, Karin A. Remington, Robert L. Strausberg, J. Craig Venter, Richard K. Wilson, Mark A. Batzer, Carlos D. Bustamante, Evan E. Eichler, Matthew W. Hahn, Ross C. Hardison, Kateryna D. Makova, Webb Miller, Aleksandar Milosavljevic, Robert E. Palermo, Adam Siepel, James M. Sikela, Tony Attaway, Stephanie Bell, Kelly E. Bernard, Christian J. Buhay, Mimi N. Chandrabose, Marvin Dao, Clay Davis, Kimberly D. Delehaunty, Yan Ding, Huyen H. Dinh, Shannon Dugan-Rocha, Lucinda A. Fulton, Ramatu A. Gabisi, Toni T. Garner, Jennifer Godfrey, Alicia C. Hawes, Judith Hernandez, Sandra Hines, Michael Holder, Jennifer Hume, Shalini N. Jhangiani, Vandita Joshi, Ziad M. Khan, Ewen F. Kirkness, Andrew Cree, R. Gerald Fowler, Sandra Lee, Lora R. Lewis, Zhangwan Li, Yih-shin Liu, Stephanie M. Moore, Donna Muzny, Lynne V. Nazareth, Dinh N. Ngo, Geoffrey O. Okwuonu, Grace Pai, David Parker, Heidie A. Paul, Cynthia Pfannkoch, Craig S. Pohl, Yu-Hui Rogers, San J. Ruiz, Aniko Sabo, Jireh Santibanez, Brian W. Schneider, Scott M. Smith, Erica Sodergren, Amanda F. Svatek, Teresa R. Utterback, Selina Vattathil, Wesley Warren, Courtney S. White, Asif T. Chinwalla, Yucheng Feng, Aaron L. Halpern, LaDeana W. Hillier, Xiaoqiu Huang, Pat Minx, Joanne O. Nelson, Kymberlie H. Pepin, Xiang Qin, Granger G. Sutton, Eli Venter, Brian P. Walenz, John W. Wallis, Kim C. Worley, Shiaw-Pyng Yang, Steven M. Jones, Marco A. Marra, Mariano Rocchi, Jacqueline E. Schein, Robert Baertsch, Laura Clarke, Miklos Csuros, Jarret Glasscock, R. Alan Harris, Paul Havlak, Andrew R. Jackson, Huaiyang Jiang, Yue Liu, David N. Messina, Yufeng Shen, Henry X. Song, Todd Wylie, Lan Zhang, Ewan Birney, Kyudong Han, Miriam K. Konkel, Jungnam Lee, Arian F. A. Smit, Brygg Ullmer, Hui Wang, Jinchuan Xing, Richard Burhans, Ze Cheng, John E. Karro, Jian Ma, Brian Raney, Xinwei She, Michael J. Cox, Jeffery P. Demuth, Laura J. Dumas, Sang-Gook Han, Janet Hopkins, Anis Karimpour-Fard, Young H. Kim, Jonathan R. Pollack, Tomas Vinar, Charles Addo-Quaye, Jeremiah Degenhardt, Alexandra Denby, Melissa J. Hubisz, Amit Indap, Carolin Kosiol, Bruce T. Lahn, Heather A. Lawson, Alison Marklein, Rasmus Nielsen, Eric J. Vallender, Andrew G. Clark, Betsy Ferguson, Ryan D. Hernandez, Kashif Hirani, Hildegard Kehrer-Sawatzki, Jessica Kolb, Shobha Patil, Ling-Ling Pu, Yanru Ren, David G. Smith, David A. Wheeler, Ian Schenck, Edward V. Ball, Rui Chen, David N. Cooper, Belinda Giardine, Fan Hsu, W. James Kent, Arthur Lesk, David L. Nelson, William E. O'Brien, Kay Prufer, Peter D. Stenson, James C. Wallace, Hui Ke, Xiao-Ming Liu, Peng Wang, Andy P. Xiang, Fan Yang, Galt P. Barber, David Haussler, Donna Karolchik, Andy D. Kern, Robert M. Kuhn, Kayla E. Smith, Ann S. Zwieg posted to genome primates by djkt on 2007-04-13 18:30:18 as along with 7 people and 4 groups ramonvidal taroleo bb805 dchughes stajich hpaces Garamonfok Bioinformatics G4ID Genetics-of-Gambling Mycology
	A distal enhancer and an ultraconserved exon are derived from a novel retroposon [My Copy] Nature (16 April 2006) by Gill Bejerano, Craig B. Lowe, Nadav Ahituv, et al.Bryan King, Adam Siepel, Sofie R. Salama, Edward M. Rubin, James W. Kent, David Haussler posted to conservation evolution indel msa by djkt on 2006-08-04 01:30:14 as along with 5 people and 6 groups marcius dchughes nickluscombe cisevol gjuggler G4ID EBI-regulation BioinfoCIPF SGU-CIPF Genetics-of-Gambling cis-regulatory-evolution
	Evolutionarily conserved elements in vertebrate, insect, worm, and yeast genomes. [My Copy] Genome Res, Vol. 15, No. 8. (August 2005), pp. 1034-1050. by A. Siepel, G. Bejerano, J. S. Pedersen, et al.A. S. Hinrichs, M. Hou, K. Rosenbloom, H. Clawson, J. Spieth, L. W. Hillier, S. Richards, G. M. Weinstock, R. K. Wilson, R. A. Gibbs, W. J. Kent, W. Miller, D. Haussler posted to conservation evolution msa phylogenetics selection by djkt on 2006-08-04 00:33:54 as along with 20 people and 4 groups thegoose2 farhat skembel alessandroparini tharris bpb aprasad balajis eckart_bindewald indigoviolet brant pradiptaray adepace olympos sujaikumar Stew cisevol dmc elfar AlexanderPico C. elegans / WormBase EisenLab cis-regulatory-evolution ConklinLab
	Phylogenetic estimation of context-dependent substitution rates by maximum likelihood. [My Copy] Mol Biol Evol, Vol. 21, No. 3. (March 2004), pp. 468-488. by A. Siepel, D. Haussler posted to hmm msa phylogenetics by djkt on 2006-08-04 00:21:46 as along with 6 people mgledi sriesenfeld mdimmic penka tale uwe
	Combining phylogenetic and hidden Markov models in biosequence analysis [My Copy] Journal of Computational Biology, Vol. 11, No. 2-3. (2004), pp. 413-428. by Adam Siepel, David Haussler posted to hmm msa phylogenetics by djkt on 2006-08-04 00:19:37 as
	Identification and Classification of Conserved RNA Secondary Structures in the Human Genome [My Copy] PLoS Comput Biol, Vol. 2, No. 4. (21 April 2006), e33. by Jakob S. Pedersen, Gill Bejerano, Adam Siepel, et al.Kate Rosenbloom, Kerstin Lindblad-Toh, Eric S. Lander, Jim Kent, Webb Miller, David Haussler posted to msa rna by djkt on 2006-08-03 22:35:17 as along with 14 people and 2 groups rb_india guhjy NicholasErho marcius eckart_bindewald tardigrade arcticrasta tabu mtagaya Eonwe ilh raylim tale hpaces BioinfoCIPF SGU-CIPF

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evolution	395
expression	266
popgen	222
selection	130
snps	129
proteins	117
human	116
metagenomics	108
microbes	108
tf	100
sequencing	100
phylogenetics	88
rna	86
duplication	85
primates	85
association	77
review	70
fly	66
conservation	64
msa	59
acceleration	57
chromatin	57
epigenetics	56
sv	54
recombination	53
yeast	48
qtl	46
arrays	44
indel	44
ecology	41
motif	40
development	39
chromosome	38
annotation	37
alignment	36
diversity	34
rodents	32
prediction	32
mtp	31
genome	31
mammals	30
testing	28
repeats	27
disease	26
divergence	25
demography	24
splicing	24
histone	23
chip-chip	21
mutation	21
variation	20
sysbio	20
methylation	19
molclock	18
simulation	18
imprinting	18
virus	18
admixture	17
bgc	16
speciation	15
microbiome	15
bayesian	15
bias	15
estimation	14
clustering	13
hmm	13
nucleosome	13
stemcells	13
gccontent	13
genotyping	12
db	12
enhancer	11
intron	11
assembly	11
structure	10
hiv	10
sex	10
domestication	10
cpg	10
migration	10
cancer	9
haplotype	9
promoter	9
model_selection	9
environment	8
design	8
community	7
resampling	7
dog	7
isochores	7
schizophrenia	6
bacteria	6
replication	6
brain	6
geography	6
lactation	6
foxp2	5
worm	5
ancient_dna	5
computing	5
immunity	4
reconstruction	4
model	4
power	4
pathogen	4
kmer	4
diet	3
correlation	3
plants	3
pax6	3
ctcf	3
drift	3
neanderthal	3
gene-transfer	3
go	3
viualization	3
vertebrates	3
theory	3
bioinfo	3
synteny	3
ethics	2
mixture	2
classification	2
aging	2
coalescent	2
acertainment	2
signalling	2
cardiovascular	2
novel	2
ultras	2
network	2
metabolomics	2
heterochromatin	2
fish	2
species_abundance	2
epistasis	2
utr	1
pca	1
transgenic	1
centromeres	1
meiosis	1
archaea	1
mirna	1
enzymes	1
genome_size	1
operons	1
roc	1
lactase	1
lrt	1
lineage_sorting	1
heart	1
microsatellite	1
metabolism	1
eukaryotes	1
reelin	1
birds	1
dimension_reduction	1
epidemiology	1
forensics	1
ptmass	1
repeated_measures	1
archeology	1
codon	1
olfaction	1
teaching	1
placenta	1
proteomics	1
teeth	1
phosphorylation	1
dna	1
gene_therapy	1
localization	1
vision	1
workflow	1
distribution	1
svd	1

djkt's Siepel:A [10 articles] Export

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