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djkt's acceleration [42 articles]

Recent papers added to djkt's library classified by the tag acceleration. You can also see everyone's acceleration.
  • Accelerated sequence divergence of conserved genomic elements in Drosophila melanogaster
    Genome Research, Vol. 18, No. 10., 1592.
    by Alisha
    posted to fly evolution conservation acceleration by djkt on 2008-10-01 19:08:20 as **
  • Human-Specific Gain of Function in a Developmental Enhancer
    Science, Vol. 321, No. 5894. (5 September 2008), pp. 1346-1350.
    by Shyam Prabhakar, Axel Visel, Jennifer A Akiyama, Malak Shoukry, Keith D Lewis, Amy Holt, Ingrid Plajzer-Frick, Harris Morrison, David R Fitzpatrick, Veena Afzal, Len A Pennacchio, Edward M Rubin, James P Noonan
    posted to tf evolution development acceleration by djkt on 2008-09-05 19:15:34 as ** along with 11 people and 1 group Stew shoshin bpcusack emptyhb Zephyrus sebastien_vigneau natstreet isimpson maximilianh caseybrown eskay Roswell Cancer Crosstalk
  • Evolution of the mammalian transcription factor binding repertoire via transposable elements
    by Bourque
    posted to acceleration conservation duplication evolution tf by djkt on 2008-08-07 16:53:01 as **
  • Is there an acceleration of the CpG transition rate during the mammalian radiation?
    Bioinformatics (28 July 2008), btn391.
    by M Peifer, JE Karro, Von HH Grunberg
    posted to acceleration cpg evolution by djkt on 2008-08-07 16:50:33 as **
  • CpG Dinucleotides and the Mutation Rate of Non-CpG DNA
    by Walser
    posted to acceleration cpg divergence duplication by djkt on 2008-08-07 16:48:54 as **
  • The functional repertoires of metazoan genomes
    by Chris Pontig
    posted to acceleration evolution msa by djkt on 2008-08-07 16:44:47 as **
  • Birth and Rapid Subcellular Adaptation of a Hominoid-Specific CDC14 Protein
    PLoS Biology, Vol. 6, No. 6. (1 June 2008), e140.
    by Lia Rosso, Ana C Marques, Manuela Weier, Nelle Lambert, Marie-Alexandra Lambot, Pierre Vanderhaeghen, Henrik Kaessmann
    posted to acceleration duplication evolution primates by djkt on 2008-06-10 20:41:41 as ** along with 2 people shoshin natstreet
  • Distinct genomic signatures of adaptation in pre- and postnatal environments during human evolution
    Proceedings of the National Academy of Sciences, Vol. 105, No. 9. (4 March 2008), pp. 3215-3220.
    by Monica Uddin, Morris Goodman, Offer Erez, Roberto Romero, Guozhen Liu, Munirul Islam, Juan C Opazo, Chet C Sherwood, Lawrence I Grossman, Derek E Wildman
    posted to acceleration evolution primates by djkt on 2008-03-04 20:21:07 as ** along with 1 person EsepBib
  • Sequence Variation in the Primate Dopamine Transporter Gene and Its Relationship to Social Dominance
    Mol Biol Evol, Vol. 25, No. 1. (1 January 2008), pp. 18-28.
    by Cassandra M Miller-Butterworth, Jay R Kaplan, John Shaffer, Bernie Devlin, Stephen B Manuck, Robert E Ferrell
    posted to acceleration evolution primates proteins tf by djkt on 2008-02-04 16:36:52 as **
  • A burst of protein sequence evolution and a prolonged period of asymmetric evolution follow gene duplication in yeast.
    Genome Res, Vol. 18, No. 1. (January 2008), pp. 137-147.
    by DR Scannell, KH Wolfe
    posted to acceleration proteins yeast by djkt on 2008-01-09 22:27:26 as ** along with 3 people and 1 group stajich dandaman gjuggler Berkeley Mycology
  • Comparative Genomics Search for Losses of Long-Established Genes on the Human Lineage
    PLoS Computational Biology, Vol. 3, No. 12. (1 December 2007), e247.
    by Jingchun Zhu, Zachary J Sanborn, Mark Diekhans, Craig B Lowe, Tom H Pringle, David Haussler
    posted to acceleration evolution proteins by djkt on 2008-01-07 16:37:40 as ** along with 5 people balicea grahamc wenhan nklee bpcusack
  • ZIPK: A Unique Case of Murine-Specific Divergence of a Conserved Vertebrate Gene
    PLoS Genetics, Vol. 3, No. 10. (1 October 2007), e180.
    by Yishay Shoval, Shmuel Pietrokovski, Adi Kimchi
    posted to acceleration evolution rodents by djkt on 2007-10-20 00:00:53 as **
  • Viral Evolution in the Genomic Age
    PLoS Biology, Vol. 5, No. 10. (1 October 2007), e278.
    by Edward C Holmes
    posted to acceleration ecology evolution phylogenetics virus by djkt on 2007-10-02 20:25:08 as *** along with 3 people dullhunk zwang dayjm
  • Adaptive Evolution of Conserved Noncoding Elements in Mammals
    PLoS Genetics, Vol. 3, No. 9. (1 September 2007), e147.
    by Su Y Kim, Jonathan K Pritchard
    posted to acceleration conservation evolution mammals msa by djkt on 2007-09-07 23:45:48 as ** along with 9 people and 5 groups mattjb livingthingdan stajich Garamonfok cabbagezs Stew cisevol rrhudson bpcusack EisenLab ComplexAdaptiveSystems DSTO-CAS livingthing cis-regulatory-evolution
  • Raising the estimate of functional human sequences.
    Genome Res (9 August 2007)
    by Michael Pheasant, John S S Mattick
    posted to acceleration annotation conservation expression rna by djkt on 2007-09-04 19:22:27 as ** along with 9 people and 2 groups jyuh jfr andersbj grahamc lp2 cabbagezs nklee ljs mimulus_99 microRNA ParkinsonLab_at_MaRS
  • Promoter regions of many neural- and nutrition-related genes have experienced positive selection during human evolution
    Nat Genet, Vol. 39, No. 9. (2007), pp. 1140-1144.
    by Ralph Haygood, Olivier Fedrigo, Brian Hanson, Ken-Daigoro Yokoyama, Gregory A Wray
    posted to acceleration evolution expression selection by djkt on 2007-08-29 23:23:39 as ** along with 6 people and 4 groups dchughes Garamonfok mimulus_99 cisevol candypmcg mjoach G4ID Genetics-of-Gambling cis-regulatory-evolution Fasting, food and evolution
  • The Molecular Anatomy of Spontaneous Germline Mutations in Human Testes
    posted to acceleration selection by djkt on 2007-08-28 18:17:22 as **
  • Divergence of Transcription Factor Binding Sites Across Related Yeast Species
    Science, Vol. 317, No. 5839. (10 August 2007), pp. 815-819.
    by Anthony R Borneman, Tara A Gianoulis, Zhengdong D Zhang, Haiyuan Yu, Joel Rozowsky, Michael R Seringhaus, Lu Y Wang, Mark Gerstein, Michael Snyder
    posted to acceleration chip-chip evolution expression tf yeast by djkt on 2007-08-13 20:04:07 as ** along with 18 people and 2 groups caseybrown bryankr aalibes chad_davis dpollard mikaelhuss lusk cjeans sujaikumar zwang GustavoLacerda Jporci maximilianh cisevol njcitulike emptyhb nklee anka EisenLab cis-regulatory-evolution
  • Fast-evolving non-coding sequences in the human genome
    Genome Biology, Vol. 8 (19 June 2007), R118.
    by Christine P Bird, Barbara E Stranger, Maureen Liu, Daryl J Thomas, Catherine E Ingle, Claude Beazley, Webb Miller, Matthew E Hurles, Emmanouil T Dermitzakis
    posted to acceleration conservation evolution by djkt on 2007-07-27 20:36:26 as ** along with 5 people and 2 groups Stew jlangdon cisevol iris42 bpcusack EisenLab cis-regulatory-evolution
  • Evolution of hydra, a Recently Evolved Testis-Expressed Gene with Nine Alternative First Exons in Drosophila melanogaster
    posted to acceleration proteins splicing by djkt on 2007-07-06 17:48:49 as **
  • Distinct class of putative "non-conserved" promoters in humans: Comparative studies of alternative promoters of human and mouse genes
    Genome Res., Vol. 17, No. 7. (1 July 2007), pp. 1005-1014.
    by Katsuki Tsuritani, Takuma Irie, Riu Yamashita, Yuta Sakakibara, Hiroyuki Wakaguri, Akinori Kanai, Junko Mizushima-Sugano, Sumio Sugano, Kenta Nakai, Yutaka Suzuki
    posted to acceleration divergence expression mammals tf by djkt on 2007-07-05 17:05:37 as ** along with 6 people and 2 groups nickluscombe cabbagezs toshiaki_katayama kmdaily antonkratz cisevol EBI-regulation cis-regulatory-evolution
  • An analysis of the gene complement of a marsupial, Monodelphis domestica: Evolution of lineage-specific genes and giant chromosomes
    Genome Res., Vol. 17, No. 7. (1 July 2007), pp. 969-981.
    by Leo Goodstadt, Andreas Heger, Caleb Webber, Chris P Ponting
    posted to acceleration evolution proteins by djkt on 2007-07-05 17:01:49 as ** along with 2 people operon RamuAnandakrishnan
  • New Approach for Using Genome Scans to Detect Recent Positive Selection in the Human Genome
    posted to acceleration evolution selection snps by djkt on 2007-06-19 21:04:09 as ***
  • Localizing Recent Adaptive Evolution in the Human Genome
    posted to acceleration evolution selection by djkt on 2007-06-01 19:06:43 as ** along with 1 group Bioinformatics
  • Tissue-specific transcriptional regulation has diverged significantly between human and mouse
    Nature Genetics, Vol. 39, No. 6. (21 May 2007), pp. 730-732.
    by Duncan T Odom, Robin D Dowell, Elizabeth S Jacobsen, William Gordon, Timothy W Danford, Kenzie D Macisaac, Alexander P Rolfe, Caitlin M Conboy, David K Gifford, Ernest Fraenkel
    posted to acceleration expression rodents by djkt on 2007-05-30 18:10:12 as ** along with 10 people and 4 groups dpollard gpalidwor dchughes cwbrown cjeans maximilianh fpattyn caseybrown yevishere gdb EisenLab G4ID Genetics-of-Gambling cis-regulatory-evolution
  • Identification of the Imprinted KLF14 Transcription Factor Undergoing Human-Specific Accelerated Evolution
    posted to acceleration tf by djkt on 2007-05-06 06:56:47 as ***
  • Human-Specific Changes of Genome Structure Detected by Genomic Triangulation
    Science, Vol. 316, No. 5822. (13 April 2007), pp. 235-237.
    by RA Harris, J Rogers, A Milosavljevic
    posted to acceleration primates by djkt on 2007-04-13 18:29:44 as *** along with 1 person and 3 groups dchughes Bioinformatics G4ID Genetics-of-Gambling
  • Founder Effects in the Assessment of HIV Polymorphisms and HLA Allele Associations
    Science, Vol. 315, No. 5818. (16 March 2007), pp. 1583-1586.
    by Tanmoy Bhattacharya, Marcus Daniels, David Heckerman, Brian Foley, Nicole Frahm, Carl Kadie, Jonathan Carlson, Karina Yusim, Ben Mcmahon, Brian Gaschen, Simon Mallal, James I Mullins, David C Nickle, Joshua Herbeck, Christine Rousseau, Gerald H Learn, Toshiyuki Miura, Christian Brander, Bruce Walker, Bette Korber
    posted to acceleration evolution hiv phylogenetics selection by djkt on 2007-03-16 16:31:30 as **
  • Comparative sequence analyses reveal rapid and divergent evolutionary changes of the WFDC locus in the primate lineage
    Genome Res., Vol. 17, No. 3. (1 March 2007), pp. 276-286.
    by Belen Hurle, Willie Swanson, Nisc, Eric D Green
    posted to acceleration evolution msa primates by djkt on 2007-03-01 18:21:05 as ** along with 1 person usagi-kirin
  • Heterogeneous Genomic Molecular Clocks in Primates
    PLoS Genetics, Vol. 2, No. 10. (1 October 2006), e163.
    by Seong-Ho Kim, Navin Elango, Charles Warden, Eric Vigoda, Soojin V Yi
    posted to acceleration molclock primates by djkt on 2006-10-10 18:11:10 as *** along with 1 person and 2 groups dchughes G4ID Genetics-of-Gambling
  • Evolutionary simulations to detect functional lineage-specific genes
    Bioinformatics, Vol. 22, No. 15. (1 August 2006), pp. 1815-1822.
    by Isabelle Dupanloup, Henrik Kaessmann
    posted to acceleration conservation evolution msa phylogenetics by djkt on 2006-09-01 16:12:34 as ** along with 2 people bpcusack BioNica
  • A Test of Neutral Molecular Evolution Based on Nucleotide Data
    Genetics, Vol. 116, No. 1. (1 May 1987), pp. 153-159.
    by Richard R Hudson, Martin Kreitman, Montserrat Aguade
    posted to acceleration molclock msa selection by djkt on 2006-08-04 00:44:54 as read along with 1 person and 1 group kaspermunch Bioinformatics
  • Accelerated evolution of nervous system genes in the origin of Homo sapiens.
    Cell, Vol. 119, No. 7. (29 December 2004), pp. 1027-1040.
    by S Dorus, EJ Vallender, PD Evans, JR Anderson, SL Gilbert, M Mahowald, GJ Wyckoff, CM Malcom, BT Lahn
    posted to acceleration evolution primates by djkt on 2006-08-04 00:43:40 as read along with 5 people and 1 group rvosa ejeffery cmm shoshin chrys FAB-lab
  • Lineage effects and the index of dispersion of molecular evolution
    Mol Biol Evol, Vol. 6, No. 6. (1 November 1989), pp. 636-647.
    by Jh Gillespie
    posted to acceleration evolution molclock by djkt on 2006-08-04 00:40:32 as read
  • An examination of the constancy of the rate of molecular evolution.
    J Mol Evol, Vol. 3, No. 3. (1974), pp. 161-177.
    by CH Langley, WM Fitch
    posted to acceleration evolution molclock by djkt on 2006-08-04 00:39:35 as read
  • Evidence for higher rates of nucleotide substitution in rodents than in man.
    Proc Natl Acad Sci U S A, Vol. 82, No. 6. (March 1985), pp. 1741-1745.
    by CI Wu, WH Li
    posted to acceleration evolution molclock rodents by djkt on 2006-08-04 00:37:20 as read
  • Simple Methods for Testing the Molecular Evolutionary Clock Hypothesis
    Genetics, Vol. 135, No. 2. (1 October 1993), pp. 599-607.
    by F Tajima
    posted to acceleration evolution molclock popgen by djkt on 2006-08-04 00:35:47 as read along with 2 people balicea usagi-kirin
  • Molecular evolution of FOXP2, a gene involved in speech and language
    Nature, Vol. 418, No. 6900. (2002), pp. 869-872.
    by Wolfgang Enard, Molly Przeworski, Simon E Fisher, Cecilia S Lai, Victor Wiebe, Takashi Kitano, Anthony P Monaco, Svante Paabo
    posted to acceleration evolution primates selection by djkt on 2006-08-04 00:11:01 as read along with 2 people and 1 group niallhaslam rvosa FAB-lab
  • Expression profiling in primates reveals a rapid evolution of human transcription factors
    Nature, Vol. 440, No. 7081. (March 2006), pp. 242-245.
    by Yoav Gilad, Alicia Oshlack, Gordon K Smyth, Terence P Speed, Kevin P White
    posted to acceleration arrays evolution expression msa primates by djkt on 2006-08-03 23:43:25 as read along with 15 people and 4 groups stevanspringer ccots eckart_bindewald dchughes tabu nirfriedman nickluscombe ranb johncumbers nicg mikaelhuss JeffR100 candypmcg emarker emptyhb FAB-lab G4ID EBI-regulation Genetics-of-Gambling
  • Natural selection on protein-coding genes in the human genome
    Nature, Vol. 437, No. 7062., pp. 1153-1157.
    by Carlos D Bustamante, Adi Fledel-Alon, Scott Williamson, Rasmus Nielsen, Melissa T Hubisz, Stephen Glanowski, David M Tanenbaum, Thomas J White, John J Sninsky, Ryan D Hernandez, Daniel Civello, Mark D Adams, Michele Cargill, Andrew G Clark
    posted to acceleration evolution msa proteins selection by djkt on 2006-08-03 23:42:14 as read along with 15 people and 5 groups stevanspringer operon jwortman aprasad dayjm balajis marcius dpollard hdopazo JBEgwa01 ramensky Garamonfok iris42 dmc shoshin EisenLab FAB-lab BioinfoCIPF SGU-CIPF Durbin group
  • Detecting recent positive selection in the human genome from haplotype structure
    Nature, Vol. 419, No. 6909. (24 October 2002), pp. 832-837.
    by Pardis C Sabeti, David E Reich, John M Higgins, Haninah Z Levine, Daniel J Richter, Stephen F Schaffner, Stacey B Gabriel, Jill V Platko, Nick J Patterson, Gavin J Mcdonald, Hans C Ackerman, Sarah J Campbell, David Altshuler, Richard Cooper, Dominic Kwiatkowski, Ryk Ward, Eric S Lander
    posted to acceleration evolution popgen selection by djkt on 2006-08-03 23:25:27 as read along with 5 people and 1 group brant ausiddiqui hdopazo jasonflannick balicea BioinfoCIPF
  • Differentiating Positive Selection from Acceleration and Relaxation in Human and Chimp
    PLoS Computational Biology, Vol. preprint, No. 2006. (1 March 2006), e.
    by Leonardo Arbiza, Joaquín Dopazo, Hernan J Dopazo
    posted to acceleration evolution selection by djkt on 2006-08-03 22:01:11 as read
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