djkt's arrays [42 articles] Export

Recent papers added to djkt's library classified by the tag arrays. You can also see everyone's arrays.

	Singular Value Decomposition–Based Alternative Splicing Detection [My Copy] JASA, Vol. 104, pp. 944-953. by Jianhua Hu, Xuming He, Gilbert J. Cote, Ralf Krahe posted to svd splicing arrays by djkt on 2009-11-02 19:15:02 as along with 1 person lwaldron
	High definition profiling of mammalian DNA methylation by array capture and single molecule bisulfite sequencing [My Copy] Genome Research, Vol. 19, No. 9. (6 September 2009), pp. 1593-1605. by Emily Hodges, Andrew D. Smith, Jude Kendall, et al.Zhenyu Xuan, Kandasamy Ravi, Michelle Rooks, Michael Q. Zhang, Kenny Ye, Arindam Bhattacharjee, Leonardo Brizuela, W. Richard McCombie, Michael Wigler, Gregory J. Hannon, James B. Hicks posted to sequencing methylation cpg arrays by djkt on 2009-09-02 23:45:26 as along with 3 people inesdesantiago fenghezi ychang0918
	A single-array preprocessing method for estimating full-resolution raw copy numbers from all Affymetrix genotyping arrays including GenomeWideSNP 5 & 6. [My Copy] Bioinformatics (Oxford, England), Vol. 25, No. 17. (1 September 2009), pp. 2149-2156. by Henrik Bengtsson, Pratyaksha Wirapati, Terence P. Speed posted to sv snps arrays by djkt on 2009-08-20 19:42:56 as along with 5 people shikin pkonings rdiaz daforerog neils
	Comments on sequence normalization of tiling array expression [My Copy] Bioinformatics, Vol. 25, No. 17. (1 September 2009), pp. 2171-2173. by Don Gilbert, Andreas Rechtsteiner posted to expression arrays by djkt on 2009-08-20 18:59:30 as along with 3 people and 1 group humburg rdiaz dswan Bioinformatics
	Probe-level estimation improves the detection of differential splicing in Affymetrix exon array studies [My Copy] Genome Biology, Vol. 10, No. 7. (2009), R77. by Essi Laajala, Tero Aittokallio, Riitta Lahesmaa, Laura Elo posted to arrays splicing by djkt on 2009-08-04 01:07:25 as along with 3 people ericrpaquet lwaldron neils
	Designing genome-wide association studies: sample size, power, imputation, and the choice of genotyping chip. [My Copy] PLoS genetics, Vol. 5, No. 5. (15 May 2009), e1000477. by Chris C. Spencer, Zhan Su, Peter Donnelly, Jonathan Marchini posted to arrays association design snps by djkt on 2009-05-15 16:38:45 as along with 12 people and 2 groups Zephyrus rdiaz psique natstreet PabloMarin xingxu guhjy sandfire daforerog reyez bertrandservin giovanni Roswell Cancer Crosstalk Journal picks
	High-throughput, high-accuracy array-based resequencing [My Copy] Proceedings of the National Academy of Sciences, Vol. 106, No. 16. (21 April 2009), pp. 6712-6717. by Jianbiao Zheng, Martin Moorhead, Li Weng, et al.Farooq Siddiqui, Victoria E. H. Carlton, James S. Ireland, Liana Lee, Joseph Peterson, Jennifer Wilkins, Sean Lin, Zhengyan Kan, Somasekar Seshagiri, Ronald W. Davis, Malek Faham posted to arrays sequencing snps by djkt on 2009-05-11 17:38:08 as along with 4 people rdiaz guhjy reyez jdbowes
	IGG3: a tool to rapidly integrate large genotype datasets for whole-genome imputation and individual-level meta-analysis [My Copy] Bioinformatics, Vol. 25, No. 11. (1 June 2009), pp. 1449-1450. by Miao-Xin Li, Lin Jiang, Patrick Y. Kao, Pak-C Sham, You-Qiang Song posted to arrays genotyping snps by djkt on 2009-04-07 19:50:39 as along with 4 people daforerog guhjy rdiaz jdbowes
	Data structures and algorithms for analysis of genetics of gene expression with Bioconductor: GGtools 3.x [My Copy] Bioinformatics, Vol. 25, No. 11. (1 June 2009), pp. 1447-1448. by Vincent J. Carey, Adam R. Davis, Michael F. Lawrence, Robert Gentleman, Benjamin A. Raby posted to arrays association expression genotyping qtl snps by djkt on 2009-04-07 19:49:42 as along with 5 people guhjy druvus nuin rdiaz giovanni
	Design of a combinatorial DNA microarray for protein-DNA interaction studies [My Copy] BMC Bioinformatics, Vol. 7 (03 October 2006), 429. by Julian Mintseris, Michael B. Eisen posted to arrays by djkt on 2009-03-27 00:08:27 as along with 1 person stsaft
	A single-sample method for normalizing and combining full-resolution copy numbers from multiple platforms, labs and analysis methods. [My Copy] Bioinformatics (Oxford, England), Vol. 25, No. 7. (1 April 2009), pp. 861-867. by H. Bengtsson, A. Ray, P. Spellman, T. P. Speed posted to arrays sv by djkt on 2009-03-25 17:37:06 as along with 5 people and 1 group zufar jfr guhjy rdiaz pkonings Bioinformatics
	A flexible rank-based framework for detecting copy number aberrations from array data [My Copy] Bioinformatics, Vol. 25, No. 6. (15 March 2009), pp. 722-728. by Thomas LaFramboise, Wendy Winckler, Roman K. Thomas posted to arrays sv by djkt on 2009-03-21 02:04:55 as along with 5 people jfr rdiaz dswan guhjy pkonings
	Papers on Normalization, Variable Selection, Classification, or Clustering of Microarray Data. [My Copy] Bioinformatics (Oxford, England) (10 February 2009) by David M M. Rocke, Trey Ideker, Olga Troyanskaya, John Quackenbush, Joaquin Dopazo posted to arrays review simulation by djkt on 2009-03-21 02:01:03 as along with 5 people rdiaz dswan neils Zephyrus renatomilani
	Robust detection and genotyping of single feature polymorphisms from gene expression data. [My Copy] PLoS computational biology, Vol. 5, No. 3. (13 March 2009), e1000317. by M. Wang, X. Hu, G. Li, et al.L. J. Leach, E. Potokina, A. Druka, R. Waugh, M. J. Kearsey, Z. Luo posted to arrays expression snps by djkt on 2009-03-21 01:54:02 as along with 2 people guhjy TRHvidsten
	Sex-Specific Splicing in Drosophila: Widespread Occurrence, Tissue Specificity and Evolutionary Conservation [My Copy] Genetics, Vol. 181, No. 2. (1 February 2009), pp. 421-434. by Marina Telonis-Scott, Artyom Kopp, Marta L. Wayne, Sergey V. Nuzhdin, Lauren M. McIntyre posted to arrays conservation expression fly sex splicing by djkt on 2009-02-20 18:22:27 as along with 1 person and 1 group daveGerrard BergmanLab
	Repeatability of published microarray gene expression analyses [My Copy] Nature Genetics, Vol. 41, No. 2. (28 January 2008), pp. 149-155. by John P. A. Ioannidis, David B. Allison, Catherine A. Ball, et al.Issa Coulibaly, Xiangqin Cui, Aedin C. Culhane, Mario Falchi, Cesare Furlanello, Laurence Game, Giuseppe Jurman, Jon Mangion, Tapan Mehta, Michael Nitzberg, Grier P. Page, Enrico Petretto, Vera van Noort posted to arrays by djkt on 2009-01-28 17:04:23 as along with 20 people and 1 group heliopais ericrpaquet guhjy greg frohike TRHvidsten giovenko jfr rdiaz zufar ptrobajo floatingpoint felsani nuin daforerog cabbagesofdoom dswan Zephyrus inesdesantiago paszkows Roswell Cancer Crosstalk
	Novel Low Abundance and Transient RNAs in Yeast Revealed by Tiling Microarrays and Ultra High–Throughput Sequencing Are Not Conserved Across Closely Related Yeast Species [My Copy] PLoS Genet, Vol. 4, No. 12. (19 December 2008), e1000299. by Albert Lee, Kasper D. Hansen, James Bullard, Sandrine Dudoit, Gavin Sherlock posted to arrays evolution expression rna yeast by djkt on 2008-12-19 18:28:00 as along with 1 person cisevol
	Expression of 24,426 human alternative splicing events and predicted cis regulation in 48 tissues and cell lines [My Copy] Nat Genet, Vol. 40, No. 12. (2 December 2008), pp. 1416-1425. by John C. Castle, Chaolin Zhang, Jyoti K. Shah, et al.Amit V. Kulkarni, Auinash Kalsotra, Thomas A. Cooper, Jason M. Johnson posted to arrays expression splicing by djkt on 2008-11-25 17:23:22 as along with 8 people ericrpaquet fenghezi tanglingfung xingxu asg pengchy dchughes rschulz
	Poisson Approximation for Significance in Genome-wide ChIP-chip Tiling Arrays [My Copy] Bioinformatics (25 October 2008), btn549. by Yu Zhang posted to arrays chip-chip mtp by djkt on 2008-10-27 16:11:56 as along with 4 people and 2 groups jfr Stew ghattem behindtherabbit Bioinformatics - CRUK SIMR bioinformatics
	Comparing Algorithms for Genotype Imputation [My Copy] The American Journal of Human Genetics, Vol. 83, No. 4. (10 October 2008), pp. 535-539. by J. Marchini, B. Howie posted to arrays genotyping snps by djkt on 2008-10-22 18:07:16 as along with 2 people xingxu caseybrown
	Removal of AU Bias from Microarray mRNA Expression Data Enhances Computational Identification of Active MicroRNAs [My Copy] PLoS Comput Biol, Vol. 4, No. 10. (3 October 2008), e1000189. by Ran Elkon, Reuven Agami posted to arrays rna by djkt on 2008-10-03 16:41:02 as along with 11 people and 2 groups magusina TRHvidsten lwaldron Alexander_Kanitz jfr giovenko ptrobajo druvus erel10 heliopais giovanni microRNA BenosLab
	Semi-supervised methods to predict patient survival from gene expression data. [My Copy] PLoS Biol, Vol. 2, No. 4. (April 2004) by E. Bair, R. Tibshirani posted to arrays expression prediction by djkt on 2008-09-26 22:56:34 as along with 5 people srp33 kristen winterschlaefer jfr rdiaz
	ITALICS: an algorithm for normalization and DNA copy number calling for Affymetrix SNP arrays [My Copy] Bioinformatics, Vol. 24, No. 6. (15 March 2008), pp. 768-774. by Guillem Rigaill, Philippe Hupe, Anna Almeida, et al.Philippe La Rosa, Jean-Philippe Meyniel, Charles Decraene, Emmanuel Barillot posted to arrays snps by djkt on 2008-03-13 16:40:46 as along with 2 people alako jfr
	Estimation and assessment of raw copy numbers at the single locus level [My Copy] Bioinformatics, Vol. 24, No. 6. (15 March 2008), pp. 759-767. by H. Bengtsson, R. Irizarry, B. Carvalho, T. P. Speed posted to arrays snps by djkt on 2008-03-13 16:40:00 as along with 5 people baizhang noushin GustavoLacerda daed Ema
	affyGG: computational protocols for genetical genomics with Affymetrix arrays. [My Copy] Bioinformatics (Oxford, England), Vol. 24, No. 3. (1 February 2008), pp. 433-434. by R. Alberts, G. Vera, R. C. Jansen posted to arrays qtl by djkt on 2008-01-31 16:43:09 as along with 3 people guhjy giovanni jfr
	Increasing the Power to Detect Causal Associations by Combining Genotypic and Expression Data in Segregating Populations [My Copy] posted to arrays association expression genotyping prediction by djkt on 2007-04-13 20:36:46 as
	Extensions to gene set enrichment. [My Copy] Bioinformatics (Oxford, England), Vol. 23, No. 3. (1 February 2007), pp. 306-313. by Zhen Jiang, Robert Gentleman posted to expression arrays annotation by djkt on 2007-02-02 17:43:15 as along with 12 people and 1 group ptrobajo guhjy tonamswish ipark-kaist jfr aviad_work ihpark ealloza waghsk heliopais giovenko magusina BioinfoCIPF
	A supervised hidden Markov model framework for efficiently segmenting tiling array data in transcriptional and ChIP-chip experiments: systematically incorporating validated biological knowledge. [My Copy] Bioinformatics (12 October 2006) by Jiang Du, Joel S S. Rozowsky, Jan O O. Korbel, et al.Zhengdong D D. Zhang, Thomas E E. Royce, Martin H H. Schultz, Michael Snyder, Mark Gerstein posted to arrays chip-chip hmm prediction by djkt on 2006-12-02 16:49:13 as along with 9 people and 2 groups talponer bais miguel tuck eckart_bindewald SeungjoonOh blobbybirdman inesdesantiago xingxu Bioinformatics UH - Computational Biology
	Biological function of unannotated transcription during the early development of Drosophila melanogaster [My Copy] Nature Genetics, Vol. 38, No. 10. (03 September 2006), pp. 1151-1158. by Robert J. Manak, Sujit Dike, Victor Sementchenko, et al.Philipp Kapranov, Frederic Biemar, Jeff Long, Jill Cheng, Ian Bell, Srinka Ghosh, Antonio Piccolboni, Thomas R. Gingeras posted to arrays expression by djkt on 2006-09-28 18:33:16 as along with 11 people and 7 groups roys ThomasDOtto inesdesantiago daveGerrard GeeSharpMinor emptyhb dpollard neveaire wrowell Stew xingxu BergmanLab Biostatistics Computational-Genomics Bioinformatics EisenLab Neuroscience Cline_lab
	Time ordering of gene coexpression [My Copy] Biostat, Vol. 7, No. 4. (1 October 2006), pp. 569-584. by Xiaoyan Leng, Hans-Georg Muller posted to arrays clustering expression by djkt on 2006-09-28 18:23:31 as
	The ENCODE (ENCyclopedia Of DNA Elements) Project. [My Copy] Science (New York, N.Y.), Vol. 306, No. 5696. (22 October 2004), pp. 636-640. by posted to arrays chip-chip expression genome msa by djkt on 2006-08-04 01:17:10 as along with 13 people and 1 group timhubbard polivares ilyashl raistrick setar balajis skhadar qfwills frohike JeffR100 olympos hpaces siebert Bioinformatics
	Expression profiling in primates reveals a rapid evolution of human transcription factors. [My Copy] Nature, Vol. 440, No. 7081. (9 March 2006), pp. 242-245. by Yoav Gilad, Alicia Oshlack, Gordon K. Smyth, Terence P. Speed, Kevin P. White posted to acceleration arrays evolution expression msa primates by djkt on 2006-08-03 23:43:25 as along with 17 people and 4 groups gderwin athma stevanspringer ccots eckart_bindewald dchughes tabu nirfriedman nickluscombe ranb johncumbers nicg mikaelhuss JeffR100 candypmcg emarker emptyhb FAB-lab G4ID EBI-regulation Genetics-of-Gambling
	A genotype calling algorithm for affymetrix SNP arrays. [My Copy] Bioinformatics (Oxford, England), Vol. 22, No. 1. (1 January 2006), pp. 7-12. by Nusrat Rabbee, Terence P. Speed posted to arrays genotyping snps by djkt on 2006-08-03 23:30:29 as along with 6 people shikin daforerog pcahan1 jfr beniltoncarvalho ashandanj
	Multiple testing methods for ChIP-Chip high density oligonucleotide array data [My Copy] Journal of Computational Biology, Vol. 13, No. 3., pp. 579-613. by S. Keles, Mj van der Laan, S. Dudoit, Se Cawley posted to arrays chip-chip mtp by djkt on 2006-08-03 23:00:24 as
	A hidden Markov model for analyzing ChIP-chip experiments on genome tiling arrays and its application to p53 binding sequences [My Copy] Bioinformatics, Vol. 21, No. Suppl 1. (2005), pp. i274-i282. by W. Li, Meyer Ca, Liu Xs posted to arrays chip-chip by djkt on 2006-08-03 22:56:35 as
	Unbiased location analysis of E2F1-binding sites suggests a widespread role for E2F1 in the human genome [My Copy] Genome Res., Vol. 16, No. 5. (1 May 2006), pp. 595-605. by Mark Bieda, Xiaoqin Xu, Michael A. Singer, Roland Green, Peggy J. Farnham posted to arrays chip-chip by djkt on 2006-08-03 22:51:05 as along with 1 person caseybrown
	Survival prediction of diffuse large-B-cell lymphoma based on both clinical and gene expression information [My Copy] Bioinformatics, Vol. 22, No. 4. (15 February 2006), pp. 466-471. by Lexin Li posted to arrays prediction by djkt on 2006-08-03 22:33:16 as
	Microarray gene expression data with linked survival phenotypes: diffuse large-B-cell lymphoma revisited [My Copy] Biostatistics, Vol. 7, No. 2. (April 2006), pp. 268-285. by Segal, R. Mark posted to arrays prediction by djkt on 2006-08-03 22:32:35 as along with 2 people jfr rdiaz
	Dimension Reduction for Classification with Gene Expression Microarray Data [My Copy] Statistical Applications in Genetics and Molecular Biology, Vol. 5, No. 1. (2006), article 6. by Jian J. Dai, Linh Lieu, David Rocke posted to arrays prediction by djkt on 2006-08-03 22:31:27 as along with 3 people akastrin rdiaz mmunson
	Hybrid hierarchical clustering with applications to microarray data [My Copy] Biostatistics, Vol. 7, No. 2. (April 2006), pp. 286-301. by Chipman, Hugh, Tibshirani, Robert posted to arrays clustering by djkt on 2006-08-03 22:23:26 as along with 1 person jfr
	Treating Expression Levels of Different Genes as a Sample in Microarray Data Analysis: Is it Worth a Risk? [My Copy] Statistical Applications in Genetics and Molecular Biology, Vol. 5, No. 1. (2006), article 9. by Lev Klebanov, Andrei Yakovlev posted to arrays expression by djkt on 2006-08-03 22:20:50 as
	Genome-Wide Detection of Polymorphisms at Nucleotide Resolution with a Single DNA Microarray [My Copy] Science, Vol. 311, No. 5769. (31 March 2006), pp. 1932-1936. by David Gresham, Douglas M. Ruderfer, Stephen C. Pratt, et al.Joseph Schacherer, Maitreya J. Dunham, David Botstein, Leonid Kruglyak posted to arrays snps by djkt on 2006-08-03 22:17:37 as along with 8 people and 3 groups stevanspringer ccots RMGraze dchughes gandhih nirfriedman Billemann vesper FAB-lab G4ID Genetics-of-Gambling

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evolution	390
expression	248
popgen	213
selection	125
snps	125
proteins	113
human	107
metagenomics	106
microbes	101
sequencing	95
tf	95
phylogenetics	85
duplication	83
rna	83
primates	82
association	75
review	69
fly	63
msa	59
conservation	58
acceleration	57
chromatin	54
epigenetics	53
sv	51
recombination	49
qtl	46
yeast	46
indel	43
arrays	42
ecology	40
development	38
annotation	37
chromosome	36
alignment	35
diversity	34
motif	33
genome	31
mtp	31
prediction	31
rodents	31
mammals	29
repeats	26
testing	26
disease	24
divergence	23
chip-chip	21
histone	21
mutation	21
splicing	21
demography	20
variation	20
sysbio	19
molclock	18
simulation	18
virus	18
methylation	17
bgc	16
admixture	15
bayesian	15
imprinting	15
bias	14
microbiome	14
speciation	14
clustering	13
estimation	13
gccontent	13
nucleosome	13
db	12
genotyping	12
hmm	11
intron	11
assembly	10
cpg	10
enhancer	10
sex	10
stemcells	10
cancer	9
domestication	9
hiv	9
migration	9
model_selection	9
promoter	9
structure	9
design	8
environment	8
haplotype	8
isochores	7
resampling	7
bacteria	6
community	6
dog	6
geography	6
lactation	6
replication	6
schizophrenia	6
ancient_dna	5
brain	5
computing	5
immunity	4
model	4
pathogen	4
power	4
reconstruction	4
worm	4
bioinfo	3
drift	3
foxp2	3
gene-transfer	3
go	3
neanderthal	3
pax6	3
plants	3
synteny	3
vertebrates	3
viualization	3
acertainment	2
aging	2
cardiovascular	2
classification	2
coalescent	2
correlation	2
diet	2
epistasis	2
ethics	2
fish	2
heterochromatin	2
kmer	2
mixture	2
network	2
novel	2
signalling	2
species_abundance	2
theory	2
ultras	2
archaea	1
archeology	1
birds	1
centromeres	1
codon	1
ctcf	1
dimension_reduction	1
dna	1
enzymes	1
epidemiology	1
eukaryotes	1
forensics	1
gene_therapy	1
genome_size	1
heart	1
lactase	1
lineage_sorting	1
localization	1
lrt	1
metabolism	1
metabolomics	1
microsatellite	1
mirna	1
olfaction	1
pca	1
phosphorylation	1
placenta	1
ptmass	1
reelin	1
repeated_measures	1
svd	1
teaching	1
teeth	1
transgenic	1
utr	1
vision	1
workflow	1

djkt's arrays [42 articles] Export

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