djkt's chip-chip [21 articles] Export

Recent papers added to djkt's library classified by the tag chip-chip. You can also see everyone's chip-chip.

	The Euchromatic and Heterochromatic Landscapes Are Shaped by Antagonizing Effects of Transcription on H2A.Z Deposition [My Copy] PLoS Genet, Vol. 5, No. 10. (16 October 2009), e1000687. by Sara Hardy, Pierre-Étienne Jacques, Nicolas Gévry, et al.Audrey Forest, Marie-Ève Fortin, Liette Laflamme, Luc Gaudreau, François Robert posted to histone expression chromatin chip-chip by djkt on 2009-11-02 19:05:27 as
	Distinguishing direct versus indirect transcription factor-DNA interactions. [My Copy] Genome research, Vol. 19, No. 11. (3 November 2009), pp. 2090-2100. by Raluca Gordân, Alexander J. Hartemink, Martha L. Bulyk posted to tf motif chip-chip by djkt on 2009-11-02 18:17:10 as along with 13 people roys sebastien_vigneau oannes nklee vingron venancio owhitney tmmurali emptyhb idonaldson maximilianh jbhiatt frohike
	Double error shrinkage method for identifying protein binding sites observed by tiling arrays with limited replication [My Copy] Bioinformatics, Vol. 25, No. 19. (1 October 2009), pp. 2486-2491. by Youngchul Kim, Stefan Bekiranov, Jae K. Lee, Taesung Park posted to chip-chip by djkt on 2009-09-28 19:25:59 as along with 1 person humburg
	Developmental roles of 21 Drosophila transcription factors are determined by quantitative differences in binding to an overlapping set of thousands of genomic regions [My Copy] Genome Biology, Vol. 10, No. 7. (23 July 2009), R80. by Stewart MacArthur, Xiao Y. Li, Jingyi Li, et al.James Brown, Hou C. Chu, Lucy Zeng, Brandi Grondona, Aaron Hechmer, Lisa Simirenko, Soile Keranen, David Knowles, Mark Stapleton, Peter Bickel, Mark Biggin, Michael Eisen posted to chip-chip chromatin fly motif tf by djkt on 2009-07-27 19:01:50 as along with 12 people and 2 groups bsamal venancio aalibes fenghezi idonaldson daveGerrard megraw scjparker maximilianh isimpson Stew druvus BergmanLab Bioinformatics - CRUK
	Identification of Yeast Transcriptional Regulation Networks Using Multivariate Random Forests [My Copy] PLoS Comput Biol, Vol. 5, No. 6. (19 June 2009), e1000414. by Yuanyuan Xiao, Mark R. Segal posted to chip-chip expression motif prediction sysbio yeast by djkt on 2009-06-19 16:22:10 as along with 2 people ptrobajo TRHvidsten
	Genomic distribution of CHD7 on chromatin tracks H3K4 methylation patterns [My Copy] Genome Research (April 2009) by Michael P. Schnetz, Cynthia F. Bartels, Kuntal Shastri, et al.Dheepa Balasubramanian, Gabriel E. Zentner, Ravishankar Balaji, Lingyun Song, Zhenghe Wang, Thomas Laframboise, Gregory E. Crawford, Peter C. Scacheri posted to chip-chip chromatin histone methylation by djkt on 2009-04-01 20:02:06 as along with 2 people fenghezi erikarner
	Evolution of the mammalian transcription factor binding repertoire via transposable elements [My Copy] Genome Research, Vol. 18, No. 11., 1752. by Bourque posted to chip-chip conservation evolution repeats tf by djkt on 2008-10-30 17:54:51 as
	Poisson Approximation for Significance in Genome-wide ChIP-chip Tiling Arrays [My Copy] Bioinformatics (25 October 2008), btn549. by Yu Zhang posted to arrays chip-chip mtp by djkt on 2008-10-27 16:11:56 as along with 4 people and 2 groups jfr Stew ghattem behindtherabbit Bioinformatics - CRUK SIMR bioinformatics
	Model-based Analysis of ChIP-Seq (MACS) [My Copy] Genome Biology, Vol. 9, No. 9. (2008), R137. by Yong Zhang, Tao Liu, Clifford Meyer, et al.Jerome Eeckhoute, David Johnson, Bradley Bernstein, Chad Nussbaum, Richard Myers, Myles Brown, Wei Li, X. Shirley Liu posted to chip-chip sequencing by djkt on 2008-10-01 01:00:29 as along with 24 people and 2 groups hzoltan Vincent_Rouilly darian stubrown mkiyer humburg cassj floatingpoint WanderingAengus bryankr jfr rschulz mcm polivares gdb ghattem yadadi stajich mdperry fpattyn bcondon idonaldson caseybrown kengg SIMR bioinformatics Mycology
	Modeling ChIP Sequencing In Silico with Applications [My Copy] PLoS Comput Biol, Vol. 4, No. 8. (22 August 2008), e1000158. by Zhengdong D. Zhang, Joel Rozowsky, Michael Snyder, Joseph Chang, Mark Gerstein posted to chip-chip sequencing by djkt on 2008-08-22 18:20:29 as along with 10 people ewilban1 cassj WanderingAengus rschulz inesdesantiago aramesh2 kengg Stew gdb caseybrown
	Selective Constraints in Experimentally Defined Primate Regulatory Regions [My Copy] PLoS Genet, Vol. 4, No. 8. (2008), e1000157. by Daniel J. Gaffney, Ran Blekhman, Jacek Majewski posted to annotation chip-chip conservation evolution expression primates tf by djkt on 2008-08-15 17:24:04 as along with 10 people and 2 groups daveGerrard xianjun madreach alhufton bpcusack aprasad pradiptaray caseybrown maximilianh cisevol BergmanLab cis-regulatory-evolution
	The insulator binding protein CTCF positions 20 nucleosomes around its binding sites across the human genome. [My Copy] PLoS genetics, Vol. 4, No. 7. (25 July 2008), e1000138. by Yutao Fu, Manisha Sinha, Craig L. Peterson, Zhiping Weng posted to chip-chip epigenetics tf by djkt on 2008-07-25 23:25:00 as along with 8 people and 3 groups suizifish gderwin sebastien_vigneau madreach polivares cisevol clearbluespring inesdesantiago CTCF JLab BergmanLab
	Gene silencing in cancer by histone H3 lysine 27 trimethylation independent of promoter DNA methylation [My Copy] Nature Genetics, Vol. 40, No. 6. (18 May 2008), pp. 741-750. by Yutaka Kondo, Lanlan Shen, Alfred S. Cheng, et al.Saira Ahmed, Yanis Boumber, Chantale Charo, Tadanori Yamochi, Takeshi Urano, Koichi Furukawa, Bernard Kwabi-Addo, David L. Gold, Yoshitaka Sekido, Tim H. Huang, Jean-Pierre J. Issa posted to chip-chip chromatin by djkt on 2008-05-29 18:35:55 as along with 4 people suizifish oelemento misonneh inesdesantiago
	Systematic evaluation of variability in ChIP-chip experiments using predefined DNA targets [My Copy] Genome Research, Vol. 18, No. 3. (7 March 2008), pp. 393-403. by David S. Johnson, Wei Li, D. Benjamin Gordon, et al.Arindam Bhattacharjee, Bo Curry, Jayati Ghosh, Leonardo Brizuela, Jason S. Carroll, Myles Brown, Paul Flicek, Christoph M. Koch, Ian Dunham, Mark Bieda, Xiaoqin Xu, Peggy J. Farnham, Philipp Kapranov, David A. Nix, Thomas R. Gingeras, Xinmin Zhang, Heather Holster, Nan Jiang, Roland D. Green, Jun S. Song, Scott A. Mccuine, Elizabeth Anton, Loan Nguyen, Nathan D. Trinklein, Zhen Ye, Keith Ching, David Hawkins, Bing Ren, Peter C. Scacheri, Joel Rozowsky, Alexander Karpikov, Ghia Euskirchen, Sherman Weissman, Mark Gerstein, Michael Snyder, Annie Yang, Zarmik Moqtaderi, Heather Hirsch, Hennady P. Shulha, Yutao Fu, Zhiping Weng, Kevin Struhl, Richard M. Myers, Jason D. Lieb, X. Shirley Liu posted to chip-chip by djkt on 2008-02-29 23:42:33 as along with 12 people and 2 groups fenghezi jfr kengg xiaobeizhao cabbagezs idonaldson caseybrown magusina lp2 stajich gracio gdb BergmanLab Mycology
	Model-based deconvolution of genome-wide DNA binding. [My Copy] Bioinformatics (1 December 2007) by David J J. Reiss, Marc T T. Facciotti, Nitin S S. Baliga posted to chip-chip by djkt on 2008-01-31 16:41:52 as along with 5 people idonaldson yevishere guhjy vega isimpson
	Divergence of Transcription Factor Binding Sites Across Related Yeast Species [My Copy] Science, Vol. 317, No. 5839. (10 August 2007), pp. 815-819. by Anthony R. Borneman, Tara A. Gianoulis, Zhengdong D. Zhang, et al.Haiyuan Yu, Joel Rozowsky, Michael R. Seringhaus, Lu Y. Wang, Mark Gerstein, Michael Snyder posted to acceleration chip-chip evolution expression tf yeast by djkt on 2007-08-13 20:04:07 as along with 22 people and 2 groups pradiptaray gdb fenghezi dbensasson caseybrown bryankr aalibes chad_davis dpollard mikaelhuss lusk cjeans sujaikumar zwang GustavoLacerda Jporci maximilianh cisevol njcitulike emptyhb nklee anka EisenLab cis-regulatory-evolution
	A supervised hidden Markov model framework for efficiently segmenting tiling array data in transcriptional and ChIP-chip experiments: systematically incorporating validated biological knowledge. [My Copy] Bioinformatics (12 October 2006) by Jiang Du, Joel S S. Rozowsky, Jan O O. Korbel, et al.Zhengdong D D. Zhang, Thomas E E. Royce, Martin H H. Schultz, Michael Snyder, Mark Gerstein posted to arrays chip-chip hmm prediction by djkt on 2006-12-02 16:49:13 as along with 9 people and 2 groups talponer bais miguel tuck eckart_bindewald SeungjoonOh blobbybirdman inesdesantiago xingxu Bioinformatics UH - Computational Biology
	The ENCODE (ENCyclopedia Of DNA Elements) Project. [My Copy] Science (New York, N.Y.), Vol. 306, No. 5696. (22 October 2004), pp. 636-640. by posted to arrays chip-chip expression genome msa by djkt on 2006-08-04 01:17:10 as along with 13 people and 1 group timhubbard polivares ilyashl raistrick setar balajis skhadar qfwills frohike JeffR100 olympos hpaces siebert Bioinformatics
	Multiple testing methods for ChIP-Chip high density oligonucleotide array data [My Copy] Journal of Computational Biology, Vol. 13, No. 3., pp. 579-613. by S. Keles, Mj van der Laan, S. Dudoit, Se Cawley posted to arrays chip-chip mtp by djkt on 2006-08-03 23:00:24 as
	A hidden Markov model for analyzing ChIP-chip experiments on genome tiling arrays and its application to p53 binding sequences [My Copy] Bioinformatics, Vol. 21, No. Suppl 1. (2005), pp. i274-i282. by W. Li, Meyer Ca, Liu Xs posted to arrays chip-chip by djkt on 2006-08-03 22:56:35 as
	Unbiased location analysis of E2F1-binding sites suggests a widespread role for E2F1 in the human genome [My Copy] Genome Res., Vol. 16, No. 5. (1 May 2006), pp. 595-605. by Mark Bieda, Xiaoqin Xu, Michael A. Singer, Roland Green, Peggy J. Farnham posted to arrays chip-chip by djkt on 2006-08-03 22:51:05 as along with 1 person caseybrown

Note: You may cite this page as: http://www.citeulike.org/user/djkt/tag/chip-chip

evolution	392
expression	261
popgen	217
selection	130
snps	127
proteins	117
human	114
metagenomics	107
microbes	106
tf	100
sequencing	97
phylogenetics	87
duplication	85
rna	85
primates	84
association	75
review	70
conservation	64
fly	64
msa	59
acceleration	57
chromatin	56
epigenetics	56
recombination	52
sv	52
yeast	48
qtl	46
indel	44
arrays	44
ecology	41
development	39
motif	39
annotation	37
chromosome	37
alignment	35
diversity	34
rodents	32
prediction	32
genome	31
mtp	31
mammals	30
repeats	27
testing	27
divergence	24
disease	24
demography	23
splicing	23
histone	23
chip-chip	21
mutation	21
sysbio	20
variation	20
methylation	19
simulation	18
virus	18
molclock	18
admixture	17
imprinting	16
bgc	16
bayesian	15
microbiome	15
bias	14
speciation	14
estimation	13
clustering	13
nucleosome	13
gccontent	13
stemcells	13
db	12
genotyping	12
hmm	11
assembly	11
enhancer	11
intron	11
structure	10
sex	10
cpg	10
hiv	10
domestication	10
cancer	9
promoter	9
migration	9
model_selection	9
haplotype	8
design	8
environment	8
dog	7
isochores	7
resampling	7
community	7
schizophrenia	6
lactation	6
geography	6
replication	6
bacteria	6
brain	6
computing	5
foxp2	5
ancient_dna	5
worm	5
power	4
reconstruction	4
model	4
kmer	4
immunity	4
pathogen	4
gene-transfer	3
plants	3
go	3
synteny	3
bioinfo	3
theory	3
vertebrates	3
pax6	3
viualization	3
drift	3
ctcf	3
neanderthal	3
coalescent	2
correlation	2
ultras	2
signalling	2
diet	2
fish	2
heterochromatin	2
cardiovascular	2
metabolomics	2
network	2
classification	2
species_abundance	2
ethics	2
mixture	2
acertainment	2
novel	2
epistasis	2
aging	2
epidemiology	1
vision	1
workflow	1
distribution	1
lineage_sorting	1
svd	1
transgenic	1
dimension_reduction	1
pca	1
birds	1
mirna	1
centromeres	1
meiosis	1
archaea	1
genome_size	1
enzymes	1
teaching	1
roc	1
teeth	1
lrt	1
phosphorylation	1
localization	1
proteomics	1
heart	1
utr	1
operons	1
gene_therapy	1
metabolism	1
microsatellite	1
repeated_measures	1
eukaryotes	1
reelin	1
placenta	1
lactase	1
olfaction	1
codon	1
archeology	1
ptmass	1
dna	1
forensics	1

djkt's chip-chip [21 articles] Export

djkt's tags