djkt's duplication [84 articles] Export

Recent papers added to djkt's library classified by the tag duplication. You can also see everyone's duplication.

	Selection to Maintain Paralogous Amino Acid Differences Under the Pressure of Gene Conversion in the Heat-Shock Protein Genes in Yeast [My Copy] Mol Biol Evol, Vol. 26, No. 12. (1 December 2009), pp. 2655-2659. by Shohei Takuno, Hideki Innan posted to yeast selection proteins duplication by djkt on 2009-11-11 00:05:03 as
	Deeply conserved chordate noncoding sequences preserve genome synteny but do not drive gene duplicate retention [My Copy] Genome Research, Vol. 19, No. 11. (29 November 2009), pp. 2036-2051. by Andrew L. Hufton, Susanne Mathia, Helene Braun, et al.Udo Georgi, Hans Lehrach, Martin Vingron, Albert J. Poustka, Georgia Panopoulou posted to ultras tf synteny evolution duplication development by djkt on 2009-11-02 18:23:14 as along with 3 people and 1 group alhufton brant maximilianh Journal picks
	Functional compensation by duplicated genes in mouse [My Copy] Trends in Genetics, Vol. 25, No. 10. (25 October 2009), pp. 441-442. by Han Liang, Wen-Hsiung Li posted to sysbio rodents duplication divergence by djkt on 2009-10-21 18:52:20 as
	Metabolic Adaptation after Whole Genome Duplication [My Copy] Mol Biol Evol, Vol. 26, No. 11. (1 November 2009), pp. 2441-2453. by Milan J. A. van Hoek, Paulien Hogeweg posted to yeast sysbio metabolism indel evolution duplication by djkt on 2009-10-12 17:56:15 as along with 1 person tomhebbron
	Automatic genome-wide reconstruction of phylogenetic gene trees [My Copy] Bioinformatics, Vol. 23, No. 13. (1 July 2007), pp. i549-558. by Ilan Wapinski, Avi Pfeffer, Nir Friedman, Aviv Regev posted to proteins phylogenetics duplication by djkt on 2009-10-09 16:29:19 as along with 7 people and 1 group biomcgary thegoose2 gjuggler stajich shigepong seitentaisei tharris Mycology
	Personalized copy number and segmental duplication maps using next-generation sequencing. [My Copy] Nature genetics, Vol. 41, No. 10. (30 October 2009), pp. 1061-1067. by Can Alkan, Jeffrey M. Kidd, Tomas Marques-Bonet, et al.Gozde Aksay, Francesca Antonacci, Fereydoun Hormozdiari, Jacob O. Kitzman, Carl Baker, Maika Malig, Onur Mutlu, S. Cenk Sahinalp, Richard A. Gibbs, Evan E. Eichler posted to sv sequencing duplication by djkt on 2009-09-29 17:36:24 as along with 30 people and 1 group ongenetics chvlyl leemachado daed gbenson n00c bozdagd dakelley sbmontgomery eshirdel merpublic shyamsg scmelton qayub natstreet fenghezi Annab nuin xingxu jamesmorris rdiaz brant torfinnnome jandot pkonings danmaclean daforerog frohike rschulz gangcai Journal picks
	Evolutionary History Reconstruction for Mammalian Complex Gene Clusters [My Copy] Journal of Computational Biology, Vol. 16, No. 8. (August 2009), pp. 1051-1070. by Yu Zhang, Giltae Song, Tomáš Vinař, Eric D. Green, Adam Siepel, Webb Miller posted to reconstruction proteins evolution duplication chromosome by djkt on 2009-08-21 01:03:26 as
	Locating Large-Scale Gene Duplication Events through Reconciled Trees: Implications for Identifying Ancient Polyploidy Events in Plants [My Copy] Journal of Computational Biology, Vol. 16, No. 8. (August 2009), pp. 1071-1083. by J. G. Burleigh, M. S. Bansal, A. Wehe, O. Eulenstein posted to phylogenetics evolution duplication chromosome by djkt on 2009-08-21 01:02:16 as along with 3 people biomcgary druvus natstreet
	Automated identification of conserved synteny after whole-genome duplication [My Copy] Genome Research, Vol. 19, No. 8. (22 August 2009), pp. 1497-1505. by Julian M. Catchen, John S. Conery, John H. Postlethwait posted to chromosome duplication evolution synteny by djkt on 2009-08-03 19:52:28 as along with 4 people biomcgary xianjun maximilianh natstreet
	Evolution of gene function and regulatory control after whole-genome duplication: Comparative analyses in vertebrates [My Copy] Genome Research, Vol. 19, No. 8. (13 August 2009), pp. 1404-1418. by Karin S. Kassahn, Vinh T. Dang, Simon J. Wilkins, Andrew C. Perkins, Mark A. Ragan posted to duplication evolution expression proteins sv vertebrates by djkt on 2009-08-03 19:43:17 as along with 3 people venancio fenghezi JustinCrocker
	Evolution of Stress-Regulated Gene Expression in Duplicate Genes of Arabidopsis thaliana [My Copy] PLoS Genet, Vol. 5, No. 7. (31 July 2009), e1000581. by Cheng Zou, Melissa D. Lehti-Shiu, Michael Thomashow, Shin-Han Shiu posted to duplication evolution expression by djkt on 2009-07-31 17:15:35 as along with 2 people roys sameersoi
	Evolutionary flexibility of protein complexes [My Copy] BMC Evolutionary Biology, Vol. 9, No. 1. (2009), 155. by Michael Seidl, Jorg Schultz posted to duplication evolution indel proteins by djkt on 2009-07-27 18:06:39 as along with 1 person and 1 group phoenixzxl iSEEM
	Identifying concerted evolution and gene conversion in mammalian gene pairs lasting over 100 million years [My Copy] BMC Evolutionary Biology, Vol. 9, No. 1. (07 July 2009), 156. by Andrew Carson, Stephen Scherer posted to duplication evolution mammals by djkt on 2009-07-27 18:03:56 as
	Similarly Strong Purifying Selection Acts on Human Disease Genes of All Evolutionary Ages [My Copy] Genome Biol Evol, Vol. 2009, No. 0. (22 June 2009), pp. 131-144. by James J. Cai, Elhanan Borenstein, Rong Chen, Dmitri A. Petrov posted to disease duplication proteins selection by djkt on 2009-07-10 19:32:13 as along with 2 people greg operon
	Minimal effect of ectopic gene conversion among recent duplicates in four mammalian genomes. [My Copy] Genetics, Vol. 182, No. 2. (1 June 2009), pp. 615-622. by Casey L. McGrath, Claudio Casola, Matthew W. Hahn posted to bgc duplication mammals by djkt on 2009-06-08 23:12:27 as along with 2 people bpcusack biomcgary
	Repair-Mediated Duplication by Capture of Proximal Chromosomal DNA Has Shaped Vertebrate Genome Evolution [My Copy] PLoS Genet, Vol. 5, No. 5. (8 May 2009), e1000469. by John K. Pace, Shurjo K. Sen, Mark A. Batzer, Cédric Feschotte posted to duplication by djkt on 2009-05-30 18:40:11 as
	Consequences of Lineage-Specific Gene Loss on Functional Evolution of Surviving Paralogs: ALDH1A and Retinoic Acid Signaling in Vertebrate Genomes [My Copy] PLoS Genet, Vol. 5, No. 5. (29 May 2009), e1000496. by Cristian Cañestro, Julian M. Catchen, Adriana Rodríguez-Marí, Hayato Yokoi, John H. Postlethwait posted to duplication evolution indel by djkt on 2009-05-30 18:34:51 as along with 1 person kiekyon
	Lineage-Specific Biology Revealed by a Finished Genome Assembly of the Mouse [My Copy] PLoS Biol, Vol. 7, No. 5. (26 May 2009), e1000112. by Deanna M. Church, Leo Goodstadt, LaDeana W. Hillier, et al.Michael C. Zody, Steve Goldstein, Xinwe She, Carol J. Bult, Richa Agarwala, Joshua L. Cherry, Michael DiCuccio, Wratko Hlavina, Yuri Kapustin, Peter Meric, Donna Maglott, Zoë Birtle, Ana C. Marques, Tina Graves, Shiguo Zhou, Brian Teague, Konstantinos Potamousis, Christopher Churas, Michael Place, Jill Herschleb, Ron Runnheim, Daniel Forrest, James Amos-Landgraf, David C. Schwartz, Ze Cheng, Kerstin Lindblad-Toh, Evan E. Eichler, Chris P. Ponting, The Mouse Genome Sequencing Consortium posted to assembly chromosome duplication genome rodents by djkt on 2009-05-27 16:57:35 as along with 4 people ocs aprasad scjparker dchughes
	Reconstructing the History of Yeast Genomes [My Copy] PLoS Genet, Vol. 5, No. 5. (15 May 2009), e1000483. by David Sankoff posted to chromosome duplication evolution indel phylogenetics reconstruction review yeast by djkt on 2009-05-15 16:36:52 as along with 2 people eannaokeefe emptyhb
	Additions, Losses, and Rearrangements on the Evolutionary Route from a Reconstructed Ancestor to the Modern Saccharomyces cerevisiae Genome [My Copy] PLoS Genet, Vol. 5, No. 5. (15 May 2009), e1000485. by Jonathan L. Gordon, Kevin P. Byrne, Kenneth H. Wolfe posted to chromosome duplication evolution indel reconstruction yeast by djkt on 2009-05-15 16:36:03 as along with 4 people and 1 group bpcusack cabbagesofdoom leomrtns stajich Mycology
	mRNA Retrotransposition Coupled with 5' Inversion as a Possible Source of New Genes [My Copy] Mol Biol Evol, Vol. 26, No. 6. (1 June 2009), pp. 1405-1420. by Kenji K. Kojima, Norihiro Okada posted to duplication proteins repeats by djkt on 2009-05-12 21:27:25 as along with 4 people operon dchughes bpcusack clearbluespring
	Simultaneous Bayesian gene tree reconstruction and reconciliation analysis [My Copy] Proceedings of the National Academy of Sciences, Vol. 106, No. 14. (7 April 2009), pp. 5714-5719. by Ãrjan Ãkerborg, Bengt Sennblad, Lars Arvestad, Jens Lagergren posted to bayesian duplication phylogenetics by djkt on 2009-05-11 17:45:45 as along with 2 people and 1 group pinney mhamada iSEEM
	Rapid repetitive element-mediated expansion of piRNA clusters in mammalian evolution [My Copy] Proceedings of the National Academy of Sciences, Vol. 106, No. 17. (28 April 2009), pp. 7079-7082. by Raquel Assis, Alexey S. Kondrashov posted to duplication mammals repeats rna selection by djkt on 2009-05-11 17:40:38 as along with 5 people and 1 group tonamswish gdb leemond31 stajich bpcusack Mycology
	Breakpoint graphs and ancestral genome reconstructions. [My Copy] Genome research (6 April 2009) by Max A A. Alekseyev, Pavel A A. Pevzner posted to duplication mammals sv by djkt on 2009-05-02 02:54:38 as along with 2 people maximilianh rdiaz
	Recovering genome rearrangements in the mammalian phylogeny [My Copy] Genome Research, Vol. 19, No. 5. (May 2009), pp. 934-942. by Hao Zhao, Guillaume Bourque posted to duplication mammals sv by djkt on 2009-05-02 02:53:47 as along with 2 people shikin maximilianh
	Adaptive evolution of young gene duplicates in mammals. [My Copy] Genome research, Vol. 19, No. 5. (May 2009), pp. 859-867. by Mira V. Han, Jeffery P. Demuth, Casey L. McGrath, Claudio Casola, Matthew W. Hahn posted to duplication evolution mammals proteins selection by djkt on 2009-05-02 02:49:16 as along with 4 people cmzmasek clearbluespring gjuggler maximilianh
	Gene cluster statistics with gene families [My Copy] Mol Biol Evol (15 January 2009), msp002. by Narayanan Raghupathy, Dannie Durand posted to clustering duplication proteins by djkt on 2009-04-14 17:38:34 as along with 3 people hpaces bpcusack druvus
	Differential retention of metabolic genes following whole-genome duplication. [My Copy] Molecular biology and evolution (13 February 2009) by Jean-François F. Gout, Laurent Duret, Daniel Kahn posted to duplication evolution by djkt on 2009-04-14 17:03:24 as along with 2 people robfsouza bpcusack
	The complex relationship of gene duplication and essentiality [My Copy] Trends in Genetics (13 March 2009) by Takashi Makino, Karsten Hokamp, Aoife Mclysaght posted to development duplication evolution by djkt on 2009-04-06 22:53:57 as along with 3 people maximilianh dchughes pkonings
	Multiple whole-genome alignments without a reference organism [My Copy] Genome Research, Vol. 19, No. 4. (28 April 2009), pp. 682-689. by Inna Dubchak, Alexander Poliakov, Andrey Kislyuk, Michael Brudno posted to alignment duplication msa by djkt on 2009-04-01 20:07:53 as along with 12 people fstrozzi GustavoLacerda michaelbarton mlangill dakelley xwbcn Neeperando zwang nyyu semrich azazello mhamada
	The impact of copy number variation on local gene expression in mouse hematopoietic stem and progenitor cells. [My Copy] Nature genetics (8 March 2009) by Patrick Cahan, Yedda Li, Masayo Izumi, Timothy A A. Graubert posted to duplication expression rodents sv by djkt on 2009-03-27 18:25:56 as along with 5 people rdiaz psique shikin fenghezi jdbowes
	Segmental copy number variation shapes tissue transcriptomes. [My Copy] Nature genetics (8 March 2009) by Charlotte N N. Henrichsen, Nicolas Vinckenbosch, Sebastian Zöllner, et al.Evelyne Chaignat, Sylvain Pradervand, Frédéric Schütz, Manuel Ruedi, Henrik Kaessmann, Alexandre Reymond posted to duplication expression human sv by djkt on 2009-03-27 18:24:49 as along with 11 people leemachado stubrown absterga lwaldron psique bertrandservin fenghezi megraw rdiaz daforerog buyske
	Accurate Identification of Orthologous Segments among Multiple Genomes [My Copy] Bioinformatics (2 February 2009), btp070. by Tsuyoshi Hachiya, Yasunori Osana, Kris Popendorf, Yasubumi Sakakibara posted to chromosome duplication msa synteny by djkt on 2009-03-25 17:39:02 as along with 4 people guhjy dokky Neeperando druvus
	The genomic architecture of segmental duplications and associated copy number variants in dogs [My Copy] Genome Research, Vol. 19, No. 3. (March 2009), pp. 491-499. by Thomas J. Nicholas, Ze Cheng, Mario Ventura, Katrina Mealey, Evan E. Eichler, Joshua M. Akey posted to dog duplication sv by djkt on 2009-03-03 20:32:56 as along with 3 people bertrandservin rdiaz dakelley
	Two duplicated P450 genes are associated with pyrethroid resistance in Anopheles funestus, a major malaria vector [My Copy] Genome Research, Vol. 19, No. 3. (March 2009), pp. 452-459. by Charles S. Wondji, Helen Irving, John Morgan, et al.Neil F. Lobo, Frank H. Collins, Richard H. Hunt, Maureen Coetzee, Janet Hemingway, Hilary Ranson posted to disease duplication by djkt on 2009-03-03 20:28:18 as
	PEMer: a computational framework with simulation-based error models for inferring genomic structural variants from massive paired-end sequencing data [My Copy] Genome Biology, Vol. 10, No. 2. (23 February 2009), R23. by Jan Korbel, Alexej Abyzov, Xinmeng Mu, et al.Nicholas Carriero, Philip Cayting, Zhengdong Zhang, Michael Snyder, Mark Gerstein posted to duplication indel sequencing sv by djkt on 2009-03-03 01:28:55 as along with 11 people orzenil adthrasher jessopher jrvalcourt dakelley Neeperando APRegier smiddha natstreet poschm druvus
	Universal features in the genome-level evolution of protein domains. [My Copy] Genome biology, Vol. 10, No. 1. (30 January 2009), R12. by Marco Cosentino Lagomarsino, Alessandro L. Sellerio, Philip D. Heijning, Bruno Bassetti posted to duplication evolution proteins by djkt on 2009-02-27 17:47:53 as along with 7 people docv zwang phoenixzxl idoerg VGreiff grahamc pawelszczesny
	A burst of segmental duplications in the genome of the African great ape ancestor [My Copy] Nature, Vol. 457, No. 7231. (12 February 2009), pp. 877-881. by Tomas Marques-Bonet, Jeffrey M. Kidd, Mario Ventura, et al.Tina A. Graves, Ze Cheng, Ladeana W. Hillier, Zhaoshi Jiang, Carl Baker, Ray Malfavon-Borja, Lucinda A. Fulton, Can Alkan, Gozde Aksay, Santhosh Girirajan, Priscillia Siswara, Lin Chen, Maria F. Cardone, Arcadi Navarro, Elaine R. Mardis, Richard K. Wilson, Evan E. Eichler posted to acceleration duplication primates sv by djkt on 2009-02-11 20:33:33 as along with 8 people psique dakelley provero shoshin anphony pkonings treangen jbhiatt
	Inferring genomic flux in bacteria [My Copy] Genome Research, Vol. 19, 306. by Xavier Didelot, Aaron Darling, Daniel Falush posted to duplication evolution indel microbes by djkt on 2009-02-10 00:38:48 as along with 1 group iSEEM
	Mystery of intron gain: new data and new models [My Copy] Trends in Genetics, Vol. 25, No. 2. (February 2009), pp. 67-73. by Scott W. Roy, Manuel Irimia posted to duplication indel intron review by djkt on 2009-02-09 18:23:03 as
	Organised Genome Dynamics in the Escherichia coli Species Results in Highly Diverse Adaptive Paths [My Copy] PLoS Genet, Vol. 5, No. 1. (23 January 2009), e1000344. by Marie Touchon, Claire Hoede, Olivier Tenaillon, et al.Valérie Barbe, Simon Baeriswyl, Philippe Bidet, Edouard Bingen, Stéphane Bonacorsi, Christiane Bouchier, Odile Bouvet, Alexandra Calteau, Hélène Chiapello, Olivier Clermont, Stéphane Cruveiller, Antoine Danchin, Médéric Diard, Carole Dossat, Meriem E. Karoui, Eric Frapy, Louis Garry, Jean M. Ghigo, Anne M. Gilles, James Johnson, Chantal Le Bouguénec, Mathilde Lescat, Sophie Mangenot, Vanessa Martinez-Jéhanne, Ivan Matic, Xavier Nassif, Sophie Oztas, Marie A. Petit, Christophe Pichon, Zoé Rouy, Claude S. Ruf, Dominique Schneider, Jérôme Tourret, Benoit Vacherie, David Vallenet, Claudine Médigue, Eduardo P. C. Rocha, Erick Denamur posted to chromosome duplication evolution microbes selection by djkt on 2009-02-05 17:55:51 as along with 3 people and 1 group calderonv katholt jjray iSEEM
	Coding region structural heterogeneity and turnover of transcription start sites contribute to divergence in expression between duplicate genes. [My Copy] Genome biology, Vol. 10, No. 1. (2009) by Chungoo Park, Kateryna D. Makova posted to duplication evolution expression tf by djkt on 2009-02-03 02:18:08 as along with 6 people and 1 group maximilianh JustinCrocker natstreet madreach bmajoros cisevol cis-regulatory-evolution
	A Microhomology-Mediated Break-Induced Replication Model for the Origin of Human Copy Number Variation [My Copy] PLoS Genet, Vol. 5, No. 1. (30 January 2009), e1000327. by P. J. Hastings, Grzegorz Ira, James R. Lupski posted to duplication sv by djkt on 2009-01-30 21:34:58 as along with 3 people sameersoi ahornby jdbowes
	Divergent Evolution of Duplicate Genes Leads to Genetic Incompatibilities Within A. thaliana [My Copy] Science, Vol. 323, No. 5914. (30 January 2009), pp. 623-626. by David Bikard, Dhaval Patel, Claire Le Mette, et al.Veronica Giorgi, Christine Camilleri, Malcolm J. Bennett, Olivier Loudet posted to divergence duplication evolution by djkt on 2009-01-30 17:00:07 as along with 7 people fenghezi rjlawren gjuggler bpcusack dinnes RamuAnandakrishnan dbikard
	Sequencing human–gibbon breakpoints of synteny reveals mosaic new insertions at rearrangement sites [My Copy] Genome Research (January 2009) by Girirajan, Chen, Graves, et al. Marques-Bonet, Ventura, Fronick, Fulton, Rocchi, Fulton, Wilson, Mardis, Eichler posted to chromosome duplication indel primates by djkt on 2009-01-27 23:44:29 as
	Multiple Chromosomal Rearrangements Structured the Ancestral Vertebrate Hox-Bearing Protochromosomes [My Copy] PLoS Genet, Vol. 5, No. 1. (23 January 2009), e1000349. by Vincent J. Lynch, Günter P. Wagner posted to chromosome development duplication evolution by djkt on 2009-01-23 16:58:14 as
	Formation and Longevity of Chimeric and Duplicate Genes in Drosophila melanogaster [My Copy] Genetics, Vol. 181, No. 1. (1 January 2009), pp. 313-322. by Rebekah L. Rogers, Trevor Bedford, Daniel L. Hartl posted to duplication evolution fly proteins by djkt on 2009-01-12 23:13:56 as
	Selective maintenance of Drosophila tandemly-arranged duplicated genes during evolution [My Copy] Genome Biology, Vol. 9 (16 December 2008), R176. by Carlos, Miguel Manzanares posted to chromosome duplication evolution fly by djkt on 2009-01-07 01:32:28 as along with 3 people and 1 group cisevol tny dandaman cis-regulatory-evolution
	Evolutionary-new centromeres preferentially emerge within gene deserts [My Copy] Genome Biology, Vol. 9 (16 December 2008), R173. by Mariana, Mariano Rocchi posted to chromosome duplication evolution by djkt on 2009-01-07 01:26:52 as along with 1 person tny
	Comparative sequence analysis of primate subtelomeres originating from a chromosome fission event [My Copy] Genome Research, Vol. 19, No. 1., 33. by Katharine M. Rudd posted to chromosome duplication evolution primates by djkt on 2009-01-06 22:24:33 as

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evolution	390
expression	250
popgen	214
selection	128
snps	126
proteins	116
human	108
metagenomics	106
microbes	101
sequencing	97
tf	96
phylogenetics	86
duplication	84
primates	83
rna	83
association	75
review	70
fly	63
conservation	59
msa	59
acceleration	57
chromatin	54
epigenetics	53
sv	51
recombination	49
yeast	47
qtl	46
arrays	44
indel	43
ecology	41
development	39
annotation	37
chromosome	36
alignment	35
diversity	34
motif	34
prediction	32
genome	31
mtp	31
rodents	31
mammals	29
repeats	27
testing	27
disease	24
divergence	23
splicing	22
chip-chip	21
demography	21
histone	21
mutation	21
variation	20
sysbio	19
molclock	18
simulation	18
virus	18
methylation	17
bgc	16
admixture	15
bayesian	15
imprinting	15
bias	14
microbiome	14
speciation	14
clustering	13
estimation	13
gccontent	13
nucleosome	13
db	12
genotyping	12
assembly	11
hmm	11
intron	11
cpg	10
domestication	10
enhancer	10
hiv	10
sex	10
stemcells	10
cancer	9
migration	9
model_selection	9
promoter	9
structure	9
design	8
environment	8
haplotype	8
community	7
dog	7
isochores	7
resampling	7
bacteria	6
brain	6
geography	6
lactation	6
replication	6
schizophrenia	6
ancient_dna	5
computing	5
foxp2	5
immunity	4
kmer	4
model	4
pathogen	4
power	4
reconstruction	4
worm	4
bioinfo	3
drift	3
gene-transfer	3
go	3
neanderthal	3
pax6	3
plants	3
synteny	3
theory	3
vertebrates	3
viualization	3
acertainment	2
aging	2
cardiovascular	2
classification	2
coalescent	2
correlation	2
diet	2
epistasis	2
ethics	2
fish	2
heterochromatin	2
mixture	2
network	2
novel	2
signalling	2
species_abundance	2
ultras	2
archaea	1
archeology	1
birds	1
centromeres	1
codon	1
ctcf	1
dimension_reduction	1
distribution	1
dna	1
enzymes	1
epidemiology	1
eukaryotes	1
forensics	1
gene_therapy	1
genome_size	1
heart	1
lactase	1
lineage_sorting	1
localization	1
lrt	1
metabolism	1
metabolomics	1
microsatellite	1
mirna	1
olfaction	1
pca	1
phosphorylation	1
placenta	1
ptmass	1
reelin	1
repeated_measures	1
roc	1
svd	1
teaching	1
teeth	1
transgenic	1
utr	1
vision	1
workflow	1

djkt's duplication [84 articles] Export

djkt's tags