djkt's epigenetics [53 articles] Export

Recent papers added to djkt's library classified by the tag epigenetics. You can also see everyone's epigenetics.

	A transposon-induced epigenetic change leads to sex determination in melon [My Copy] Nature, Vol. 461, No. 7267. (22 October 2009), pp. 1135-1138. by Antoine Martin, Christelle Troadec, Adnane Boualem, et al.Mazen Rajab, Ronan Fernandez, Halima Morin, Michel Pitrat, Catherine Dogimont, Abdelhafid Bendahmane posted to sex repeats promoter plants expression epigenetics by djkt on 2009-10-21 22:14:59 as along with 2 people maren gderwin
	Chromatin poises miRNA- and protein-coding genes for expression. [My Copy] Genome research, Vol. 19, No. 10. (27 October 2009), pp. 1742-1751. by Artem Barski, Raja Jothi, Suresh Cuddapah, et al.Kairong Cui, Tae-Young Y. Roh, Dustin E. Schones, Keji Zhao posted to rna expression epigenetics chromatin by djkt on 2009-10-02 00:01:33 as along with 9 people and 2 groups tonamswish heliopais samgj polivares megraw inesdesantiago fpattyn fenghezi idonaldson microRNA Neuroblastoma
	The logic of chromatin architecture and remodelling at promoters. [My Copy] Nature, Vol. 461, No. 7261. (10 September 2009), pp. 193-198. by Bradley R. Cairns posted to promoter expression epigenetics chromatin by djkt on 2009-09-09 22:15:40 as along with 8 people RyuOgawa hagechouchin443 fenghezi cmzmasek TRHvidsten inesdesantiago rschulz humburg
	Regulation of Ubx Expression by Epigenetic Enhancer Silencing in Response to Ubx Levels and Genetic Variation [My Copy] PLoS Genet, Vol. 5, No. 9. (4 September 2009), e1000633. by Michael A. Crickmore, Vikram Ranade, Richard S. Mann posted to variation fly expression epigenetics enhancer development by djkt on 2009-09-05 16:17:25 as along with 2 people and 2 groups emptyhb cisevol cis-regulatory-evolution BergmanLab
	Epigenetics of human T cells during the G0→G1 transition [My Copy] Genome Research, Vol. 19, No. 8. (August 2009), pp. 1325-1337. by Alexander E. Smith, Constantinos Chronis, Manolis Christodoulakis, et al.Stephen J. Orr, Nicholas C. Lea, Natalie A. Twine, Akshay Bhinge, Ghulam J. Mufti, Thomas posted to epigenetics expression histone methylation promoter by djkt on 2009-08-07 01:21:29 as along with 2 people ashkelon13 antonkratz
	The presence of RNA polymerase II, active or stalled, predicts epigenetic fate of promoter CpG islands [My Copy] Genome Research, Vol. 19, No. 11. (17 November 2009), pp. 1974-1982. by Hideyuki Takeshima, Satoshi Yamashita, Taichi Shimazu, Tohru Niwa, Toshikazu Ushijima posted to promoter methylation histone expression epigenetics cpg by djkt on 2009-08-06 19:23:44 as along with 3 people megraw owhitney xianjun
	Epigenetic Inheritance and the Missing Heritability Problem [My Copy] Genetics, Vol. 182, No. 3. (1 July 2009), pp. 845-850. by Montgomery Slatkin posted to association epigenetics by djkt on 2009-07-21 18:33:36 as along with 2 people psique guhjy
	Differential chromatin marking of introns and expressed exons by H3K36me3. [My Copy] Nature genetics (1 February 2009) by Paulina Kolasinska-Zwierz, Thomas Down, Isabel Latorre, Tao Liu, X Shirley S. Liu, Julie Ahringer posted to epigenetics expression histone splicing by djkt on 2009-02-25 17:56:53 as along with 8 people and 1 group dpollard bpcusack inesdesantiago absterga fenghezi Dulcinea dchughes WanderingAengus RockmanLab
	H3K27me3 forms BLOCs over silent genes and intergenic regions and specifies a histone banding pattern on a mouse autosomal chromosome [My Copy] Genome Research, Vol. 19, 221. by Florian Pauler posted to epigenetics histone rodents by djkt on 2009-02-10 00:29:04 as
	Profiling RE1/REST-mediated histone modifications in the human genome [My Copy] Genome Biology, Vol. 10 (27 January 2009), R9. by Deyou, Mark F. Mehler posted to epigenetics histone by djkt on 2009-02-03 02:20:01 as along with 2 people cassj idonaldson
	DNA methylation profiles in monozygotic and dizygotic twins [My Copy] Nat Genet, Vol. 41, No. 2. (18 January 2009), pp. 240-245. by Zachary A. Kaminsky, Thomas Tang, Sun-Chong Wang, et al.Carolyn Ptak, Gabriel H. T. Oh, Albert H. C. Wong, Laura A. Feldcamp, Carl Virtanen, Jonas Halfvarson, Curt Tysk, Allan F. McRae, Peter M. Visscher, Grant W. Montgomery, Irving I. Gottesman, Nicholas G. Martin, Art Petronis posted to epigenetics by djkt on 2009-01-28 17:13:01 as along with 9 people and 1 group sf11 marywaye fenghezi jakekei suizifish felsani clearbluespring Zephyrus misonneh Roswell Cancer Crosstalk
	Large histone H3 lysine 9 dimethylated chromatin blocks distinguish differentiated from embryonic stem cells. [My Copy] Nature genetics (18 January 2009) by Bo Wen, Hao Wu, Yoichi Shinkai, Rafael A A. Irizarry, Andrew P P. Feinberg posted to chromatin development epigenetics by djkt on 2009-01-28 17:12:02 as along with 3 people fenghezi felsani inesdesantiago
	HapMap methylation-associated SNPs, markers of germline DNA methylation, positively correlate with regional levels of human meiotic recombination [My Copy] Genome Research (January 2009) by M. I. Sigurdsson, A. V. Smith, H. T. Bjornsson, J. J. Jonsson posted to epigenetics methylation recombination snps by djkt on 2009-01-27 23:40:02 as
	Global analysis of the insulator binding protein CTCF in chromatin barrier regions reveals demarcation of active and repressive domains [My Copy] Genome Research, Vol. 19, No. 1., 24. by Suresh Cuddapah, Raja Jothi, Dustin E. Schones, Tae-Young Roh, Kairong Cui, Keji Zhao posted to chromatin epigenetics by djkt on 2009-01-06 22:22:33 as
	Genome-wide relationship between histone H3 lysine 4 mono- and tri-methylation and transcription factor binding [My Copy] Genome Research, Vol. 18, No. 12., 1906. by Robertson posted to chromatin epigenetics histone tf by djkt on 2008-12-05 03:27:42 as
	Evolutionary footprints of nucleosome positions in yeast. [My Copy] Trends in genetics : TIG, Vol. 24, No. 12. (24 December 2008), pp. 583-587. by Stefan Washietl, Rainer Machné, Nick Goldman posted to chromatin conservation epigenetics evolution nucleosome yeast by djkt on 2008-11-24 03:38:03 as along with 4 people bpcusack ilyashl gderwin gjuggler
	CTCF cis-regulates trinucleotide repeat instability in an epigenetic manner: a novel basis for mutational hot spot determination. [My Copy] PLoS genetics, Vol. 4, No. 11. (14 November 2008), e1000257. by R. T. Libby, K. A. Hagerman, V. V. Pineda, et al.R. Lau, D. H. Cho, S. L. Baccam, M. M. Axford, J. D. Cleary, J. M. Moore, B. L. Sopher, S. J. Tapscott, G. N. Filippova, C. E. Pearson, A. R. La Spada posted to ctcf epigenetics mutation repeats by djkt on 2008-11-15 00:29:39 as along with 1 person sebastien_vigneau
	Bidirectional Transcription Directs Both Transcriptional Gene Activation and Suppression in Human Cells [My Copy] PLoS Genet, Vol. 4, No. 11. (14 November 2008), e1000258. by Kevin V. Morris, Sharon Santoso, Anne-Marie Turner, Chiara Pastori, Peter G. Hawkins posted to epigenetics expression rna by djkt on 2008-11-15 00:27:58 as along with 2 people matthewjawood rschulz
	Chromatin- and Transcription-Related Factors Repress Transcription from within Coding Regions throughout the Saccharomyces cerevisiae Genome [My Copy] PLoS Biology, Vol. 6, No. 11. (1 November 2008), e277. by Vanessa Cheung, Gordon Chua, Nizar N. Batada, et al.Christian R. Landry, Stephen W. Michnick, Timothy R. Hughes, Fred Winston posted to chromatin epigenetics expression tf yeast by djkt on 2008-11-11 19:11:46 as along with 4 people xianjun inesdesantiago bpcusack caseybrown
	Overlapping euchromatin/heterochromatin- associated marks are enriched in imprinted gene regions and predict allele-specific modification [My Copy] Genome Research, Vol. 18, No. 11., 1806. by Wen posted to chromatin epigenetics expression imprinting by djkt on 2008-10-30 17:58:59 as
	Depletion of Human Histone H1 Variants Uncovers Specific Roles in Gene Expression and Cell Growth [My Copy] PLoS Genet, Vol. 4, No. 10. (17 October 2008), e1000227. by Mónica Sancho, Erika Diani, Miguel Beato, Albert Jordan posted to chromatin epigenetics expression by djkt on 2008-10-17 18:35:27 as along with 1 person mrochman
	ChromaSig: A Probabilistic Approach to Finding Common Chromatin Signatures in the Human Genome [My Copy] PLoS Comput Biol, Vol. 4, No. 10. (17 October 2008), e1000201. by Gary Hon, Bing Ren, Wei Wang posted to chromatin epigenetics prediction tf by djkt on 2008-10-17 18:10:58 as along with 6 people darian sebastien_vigneau ewilban1 guhjy magusina inesdesantiago
	Predicting Human Nucleosome Occupancy from Primary Sequence [My Copy] PLoS Comput Biol, Vol. 4, No. 8. (22 August 2008), e1000134. by Shobhit Gupta, Jonathan Dennis, Robert E. Thurman, Robert Kingston, John A. Stamatoyannopoulos, William S. Noble posted to epigenetics nucleosome prediction by djkt on 2008-08-22 18:17:54 as along with 4 people gdb madreach Stew aalibes
	Genome-scale DNA methylation maps of pluripotent and differentiated cells [My Copy] Nature, Vol. 454, No. 7205. (06 July 2008), pp. 766-770. by Alexander Meissner, Tarjei S. Mikkelsen, Hongcang Gu, et al.Marius Wernig, Jacob Hanna, Andrey Sivachenko, Xiaolan Zhang, Bradley E. Bernstein, Chad Nusbaum, David B. Jaffe, Andreas Gnirke, Rudolf Jaenisch, Eric S. Lander posted to epigenetics stemcells by djkt on 2008-08-07 16:33:43 as along with 14 people and 1 group aprickett saravana jmstat mmartin christoffpale guhjy rschulz jernst jfr mrochman gdb jasonflannick inesdesantiago wsjames Oxford Virology
	Inferring causal relationships among different histone modifications and gene expression [My Copy] posted to epigenetics expression by djkt on 2008-08-01 19:12:06 as
	The insulator binding protein CTCF positions 20 nucleosomes around its binding sites across the human genome. [My Copy] PLoS genetics, Vol. 4, No. 7. (25 July 2008), e1000138. by Yutao Fu, Manisha Sinha, Craig L. Peterson, Zhiping Weng posted to chip-chip epigenetics tf by djkt on 2008-07-25 23:25:00 as along with 7 people and 3 groups gderwin sebastien_vigneau madreach polivares cisevol clearbluespring inesdesantiago CTCF JLab BergmanLab
	DNA methylation and structural and functional bimodality of vertebrate promoters. [My Copy] Molecular biology and evolution, Vol. 25, No. 8. (August 2008), pp. 1602-1608. by N. Elango, S. V. Yi posted to epigenetics evolution expression tf by djkt on 2008-07-18 21:07:58 as along with 3 people huiminC aprasad bpcusack
	Asymmetric histone modifications between the original and derived loci of human segmental duplications [My Copy] Genome Biology, Vol. 9, No. 7. (2008) by Deyou Zheng posted to duplication epigenetics evolution human by djkt on 2008-07-03 22:34:14 as along with 3 people and 2 groups Zephyrus jandot bpcusack R.E.A.D References
	Automated mapping of large-scale chromatin structure in ENCODE. [My Copy] Bioinformatics (Oxford, England) (30 June 2008) by Heng Lian, William A A. Thompson, Robert Thurman, John A A. Stamatoyannopoulos, William Stafford S. Noble, Charles E E. Lawrence posted to annotation epigenetics by djkt on 2008-07-03 22:27:20 as along with 3 people dakelley aprasad timflutre
	Dissecting direct reprogramming through integrative genomic analysis [My Copy] Nature (28 May 2008) by Tarjei S. Mikkelsen, Jacob Hanna, Xiaolan Zhang, et al.Manching Ku, Marius Wernig, Patrick Schorderet, Bradley E. Bernstein, Rudolf Jaenisch, Eric S. Lander, Alexander Meissner posted to epigenetics expression stemcells by djkt on 2008-07-02 22:32:26 as along with 4 people jernst zwang jasonflannick inesdesantiago
	Genomic surveys by methylation-sensitive SNP analysis identify sequence-dependent allele-specific DNA methylation. [My Copy] Nature genetics (22 June 2008) by Kristi Kerkel, Alexandra Spadola, Eric Yuan, et al.Jolanta Kosek, Le Jiang, Eldad Hod, Kerry Li, Vundavalli V V. Murty, Nicole Schupf, Eric Vilain, Mitzi Morris, Fatemeh Haghighi, Benjamin Tycko posted to epigenetics popgen snps by djkt on 2008-06-27 20:01:22 as along with 3 people huiminC rschulz oelemento
	Combinatorial patterns of histone acetylations and methylations in the human genome [My Copy] Nature Genetics, Vol. 40, No. 7. (15 June 2008), pp. 897-903. by Zhibin Wang, Chongzhi Zang, Jeffrey A. Rosenfeld, et al.Dustin E. Schones, Artem Barski, Suresh Cuddapah, Kairong Cui, Tae-Young Roh, Weiqun Peng, Michael Q. Zhang, Keji Zhao posted to epigenetics expression human by djkt on 2008-06-27 19:58:40 as along with 16 people and 1 group akakak hagechouchin443 RyuOgawa suizifish tonamswish sebastien_vigneau gderwin oelemento raylim coela jernst bpcusack kambiz caseybrown kengg inesdesantiago Epigenetics
	Global Mapping of DNA Methylation in Mouse Promoters Reveals Epigenetic Reprogramming of Pluripotency Genes [My Copy] PLoS Genet, Vol. 4, No. 6. (27 June 2008), e1000116. by Cassandra R. Farthing, Gabriella Ficz, Ray K. Ng, et al.Chun-Fung Chan, Simon Andrews, Wendy Dean, Myriam Hemberger, Wolf Reik posted to epigenetics stemcells by djkt on 2008-06-27 19:50:49 as along with 5 people rschulz MSchipper Schmidtc inesdesantiago epigenetics
	Recracking the nucleosome positioning code [My Copy] by Mark Segal posted to epigenetics by djkt on 2008-06-18 19:01:59 as
	Identification of active transcriptional regulatory modules by the functional assay of DNA from nucleosome-free regions [My Copy] Genome Research, Vol. 18, No. 6. (25 June 2008), pp. 930-938. by Mahesh Yaragatti, Claudio Basilico, Lisa Dailey posted to annotation epigenetics expression tf by djkt on 2008-06-03 06:25:13 as along with 3 people tonamswish maximilianh inesdesantiago
	Random monoallelic expression: making a choice. [My Copy] Trends in genetics : TIG, Vol. 24, No. 6. (29 June 2008), pp. 257-259. by Christel Krueger, Ian M. Morison posted to epigenetics evolution expression by djkt on 2008-05-28 16:24:29 as along with 5 people dswan bpcusack rschulz klo inesdesantiago
	DNA methylation landscapes: provocative insights from epigenomics. [My Copy] Nature reviews. Genetics (8 May 2008) by Miho M M. Suzuki, Adrian Bird posted to epigenetics by djkt on 2008-05-19 19:02:20 as along with 8 people tomhebbron misonneh jfr rschulz bootsy dchughes guhjy inesdesantiago
	Global Chromatin Domain Organization of the Drosophila Genome [My Copy] posted to epigenetics evolution expression fly by djkt on 2008-03-28 22:35:13 as
	Nutritional Control of Reproductive Status in Honeybees via DNA Methylation [My Copy] Science, Vol. 319, No. 5871. (28 March 2008), pp. 1827-1830. by R. Kucharski, J. Maleszka, S. Foret, R. Maleszka posted to epigenetics by djkt on 2008-03-28 16:56:48 as along with 10 people and 1 group huiminC stevanspringer aprasad kengg epigenetics aubinhon faion kjglennie sunhwan stefanjanusz Integrative_biology_behavior
	Dynamic Remodeling of Individual Nucleosomes Across a Eukaryotic Genome in Response to Transcriptional Perturbation [My Copy] PLoS Biology, Vol. 6, No. 3. (1 March 2008), e65. by Sushma Shivaswamy, Akshay Bhinge, Yongjun Zhao, Steven Jones, Martin Hirst, Vishwanath R. Iyer posted to epigenetics expression by djkt on 2008-03-18 21:12:15 as along with 3 people inesdesantiago lusk vega
	Shotgun bisulphite sequencing of the Arabidopsis genome reveals DNA methylation patterning [My Copy] Nature, Vol. 452, No. 7184. (17 February 2008), pp. 215-219. by Shawn J. Cokus, Suhua Feng, Xiaoyu Zhang, et al.Zugen Chen, Barry Merriman, Christian D. Haudenschild, Sriharsa Pradhan, Stanley F. Nelson, Matteo Pellegrini, Steven E. Jacobsen posted to epigenetics sequencing by djkt on 2008-03-12 19:46:48 as along with 15 people and 1 group druvus darian iamlily1046 ychang0918 rschulz natstreet iris42 mmartin hkuhn kengg usagi-kirin ghattem epigenetics mdimon slonik KCL & UCL Bioinformatics
	Cyclical DNA methylation of a transcriptionally active promoter [My Copy] Nature, Vol. 452, No. 7183. (6 March 2008), pp. 45-50. by Raphael Metivier, Rozenn Gallais, Christophe Tiffoche, et al.Christine Le Peron, Renata Z. Jurkowska, Richard P. Carmouche, David Ibberson, Peter Barath, Florence Demay, George Reid, Vladimir Benes, Albert Jeltsch, Frank Gannon, Gilles Salbert posted to epigenetics tf by djkt on 2008-03-05 21:41:21 as along with 4 people misonneh vega epigenetics clearbluespring
	Transient cyclical methylation of promoter DNA. [My Copy] Nature, Vol. 452, No. 7183. (6 March 2008), pp. 112-115. by Sara Kangaspeska, Brenda Stride, Raphaël Métivier, et al.Maria Polycarpou-Schwarz, David Ibberson, Richard Paul P. Carmouche, Vladimir Benes, Frank Gannon, George Reid posted to epigenetics tf by djkt on 2008-03-05 21:39:45 as along with 6 people vingron viclet vega maximilianh clearbluespring dunnp
	Mutations of Different Molecular Origins Exhibit Contrasting Patterns of Regional Substitution Rate Variation [My Copy] posted to epigenetics evolution by djkt on 2008-03-03 19:35:28 as
	Do Alu repeats shape the primate transcriptome? [My Copy] Genome Biology, Vol. 9, No. 2. (2008) by Araxi Urrutia, Leandro B. Ocana, Laurence Hurst posted to epigenetics evolution expression primates by djkt on 2008-02-12 06:12:11 as along with 4 people and 2 groups biomcgary cisevol bpcusack dchughes cis-regulatory-evolution BergmanLab
	Control of Genic DNA Methylation by a jmjC Domain-Containing Protein in Arabidopsis thaliana [My Copy] Science, Vol. 319, No. 5862. (25 January 2008), pp. 462-465. by Hidetoshi Saze, Akiko Shiraishi, Asuka Miura, Tetsuji Kakutani posted to epigenetics expression by djkt on 2008-01-25 15:05:22 as along with 4 people kengg epigenetics biomcgary mclarenv
	Epigenetic events in mammalian germ-cell development: reprogramming and beyond [My Copy] Nat Rev Genet, Vol. 9, No. 2. (February 2008), pp. 129-140. by Hiroyuki Sasaki, Yasuhisa Matsui posted to epigenetics review by djkt on 2008-01-24 21:42:04 as along with 3 people and 1 group Zephyrus misonneh sebastien_vigneau Roswell Cancer Crosstalk
	Massively parallel bisulphite pyrosequencing reveals the molecular complexity of breast cancer-associated cytosine-methylation patterns obtained from tissue and serum DNA [My Copy] Genome Res. (21 November 2007), gr.6883307. by Yulia Korshunova, Rebecca K. Maloney, Nathan Lakey, et al.Robert W. Citek, Blaire Bacher, Arief Budiman, Jared M. Ordway, Richard W. Mccombie, Jorge Leon, Jeffrey A. Jeddeloh, John D. Mcpherson posted to epigenetics by djkt on 2008-01-09 18:59:41 as along with 4 people misonneh mdperry epigenetics ohara
	Computational epigenetics [My Copy] Bioinformatics, Vol. 24, No. 1. (1 January 2008), pp. 1-10. by Christoph Bock, Thomas Lengauer posted to epigenetics review by djkt on 2007-12-19 18:12:28 as along with 17 people and 2 groups operon iris42 pawelsobko huali suizifish mmartin sebastien_vigneau ealloza frohike timflutre cjeans epigenetics cabbagezs barriot Ema Thomasah guhjy SIMR bioinformatics Bioinformatics
	Telomeric Trans-Silencing: An Epigenetic Repression Combining RNA Silencing and Heterochromatin Formation [My Copy] PLoS Genetics, Vol. 3, No. 9. (1 September 2007), e158. by Thibaut Josse, Laure Teysset, Anne-Laure Todeschini, Clara M. Sidor, Dominique Anxolabéhère, Stéphane Ronsseray posted to epigenetics fly rna by djkt on 2007-09-15 17:02:54 as

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evolution	390
expression	250
popgen	214
selection	128
snps	126
proteins	116
human	108
metagenomics	106
microbes	101
sequencing	97
tf	96
phylogenetics	86
duplication	84
primates	83
rna	83
association	75
review	70
fly	63
conservation	59
msa	59
acceleration	57
chromatin	54
epigenetics	53
sv	51
recombination	49
yeast	47
qtl	46
arrays	44
indel	43
ecology	41
development	39
annotation	37
chromosome	36
alignment	35
diversity	34
motif	34
prediction	32
genome	31
mtp	31
rodents	31
mammals	29
repeats	27
testing	27
disease	24
divergence	23
splicing	22
chip-chip	21
demography	21
histone	21
mutation	21
variation	20
sysbio	19
molclock	18
simulation	18
virus	18
methylation	17
bgc	16
admixture	15
bayesian	15
imprinting	15
bias	14
microbiome	14
speciation	14
clustering	13
estimation	13
gccontent	13
nucleosome	13
db	12
genotyping	12
assembly	11
hmm	11
intron	11
cpg	10
domestication	10
enhancer	10
hiv	10
sex	10
stemcells	10
cancer	9
migration	9
model_selection	9
promoter	9
structure	9
design	8
environment	8
haplotype	8
community	7
dog	7
isochores	7
resampling	7
bacteria	6
brain	6
geography	6
lactation	6
replication	6
schizophrenia	6
ancient_dna	5
computing	5
foxp2	5
immunity	4
kmer	4
model	4
pathogen	4
power	4
reconstruction	4
worm	4
bioinfo	3
drift	3
gene-transfer	3
go	3
neanderthal	3
pax6	3
plants	3
synteny	3
theory	3
vertebrates	3
viualization	3
acertainment	2
aging	2
cardiovascular	2
classification	2
coalescent	2
correlation	2
diet	2
epistasis	2
ethics	2
fish	2
heterochromatin	2
mixture	2
network	2
novel	2
signalling	2
species_abundance	2
ultras	2
archaea	1
archeology	1
birds	1
centromeres	1
codon	1
ctcf	1
dimension_reduction	1
distribution	1
dna	1
enzymes	1
epidemiology	1
eukaryotes	1
forensics	1
gene_therapy	1
genome_size	1
heart	1
lactase	1
lineage_sorting	1
localization	1
lrt	1
metabolism	1
metabolomics	1
microsatellite	1
mirna	1
olfaction	1
pca	1
phosphorylation	1
placenta	1
ptmass	1
reelin	1
repeated_measures	1
roc	1
svd	1
teaching	1
teeth	1
transgenic	1
utr	1
vision	1
workflow	1

djkt's epigenetics [53 articles] Export

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