djkt's msa [59 articles] Export

Recent papers added to djkt's library classified by the tag msa. You can also see everyone's msa.

	Multiple whole-genome alignments without a reference organism [My Copy] Genome Research, Vol. 19, No. 4. (28 April 2009), pp. 682-689. by Inna Dubchak, Alexander Poliakov, Andrey Kislyuk, Michael Brudno posted to alignment duplication msa by djkt on 2009-04-01 20:07:53 as along with 12 people fstrozzi GustavoLacerda michaelbarton mlangill dakelley xwbcn Neeperando zwang nyyu semrich azazello mhamada
	Accurate Identification of Orthologous Segments among Multiple Genomes [My Copy] Bioinformatics (2 February 2009), btp070. by Tsuyoshi Hachiya, Yasunori Osana, Kris Popendorf, Yasubumi Sakakibara posted to chromosome duplication msa synteny by djkt on 2009-03-25 17:39:02 as along with 4 people guhjy dokky Neeperando druvus
	Multiperm: shuffling multiple sequence alignments while approximately preserving dinucleotide frequencies [My Copy] Bioinformatics (9 January 2009), btp006. by Parvez Anandam, Elfar Torarinsson, Walter L. Ruzzo posted to msa testing by djkt on 2009-02-25 18:04:57 as along with 2 people idonaldson rschulz
	Non-coding RNA prediction and verification in Saccharomyces cerevisiae. [My Copy] PLoS genetics, Vol. 5, No. 1. (January 2009) by L. A. Kavanaugh, F. S. Dietrich posted to msa rna by djkt on 2009-02-06 14:14:55 as along with 2 people and 1 group ianholmes stajich Mycology
	Sequence progressive alignment, a framework for practical large-scale probabilistic consistency alignment [My Copy] Bioinformatics (4 December 2008), btn630. by Benedict Paten, Javier Herrero, Kathryn Beal, Ewan Birney posted to alignment msa by djkt on 2009-01-29 21:55:21 as along with 9 people BioNica guhjy dakelley semrich gjuggler rschulz birney operon druvus
	A Methodological Framework for the Reconstruction of Contiguous Regions of Ancestral Genomes and Its Application to Mammalian Genomes [My Copy] PLoS Comput Biol, Vol. 4, No. 11. (28 November 2008), e1000234. by Cedric Chauve, Eric Tannier posted to evolution genome msa sv by djkt on 2008-11-29 01:36:11 as along with 2 people and 1 group druvus cisevol BergmanLab
	Profile Comparer: a program for scoring and aligning profile hidden Markov models [My Copy] Bioinformatics, Vol. 24, No. 22. (15 November 2008), pp. 2630-2631. by Martin Madera posted to alignment hmm msa proteins by djkt on 2008-11-05 16:15:23 as along with 3 people and 1 group tonamswish j3xucite nuin iSEEM
	Probabilistic Phylogenetic Inference with Insertions and Deletions [My Copy] PLoS Comput Biol, Vol. 4, No. 9. (2008), e1000172. by Elena Rivas, Sean R. Eddy posted to evolution indel msa phylogenetics by djkt on 2008-09-26 18:53:18 as along with 11 people and 1 group BioNica mhamada treangen pradiptaray zwang nuin timflutre druvus aprasad gjuggler emptyhb iSEEM
	Segment-based multiple sequence alignment [My Copy] Bioinformatics, Vol. 24, No. 16. (15 August 2008), pp. i187-192. by Tobias Rausch, Anne-Katrin Emde, David Weese, Andreas Doring, Cedric Notredame, Knut Reinert posted to alignment msa by djkt on 2008-08-09 17:19:25 as along with 9 people nuin BioNica darian Md_2007 zwang Ema APRegier aprasad groepl
	Context dependence, ancestral misidentification, and spurious signatures of natural selection [My Copy] Mol. Biol. Evol., Vol. 24, No. 8. (2007), pp. 1792-1800. by R. D. Hernandez, S. H. Williamson, C. D. Bustamante posted to msa popgen snps by djkt on 2008-08-08 01:33:45 as along with 2 people bpb pradiptaray
	The functional repertoires of metazoan genomes [My Copy] by Chris Pontig posted to acceleration evolution msa by djkt on 2008-08-07 16:44:47 as
	Bellerophon: a program to detect chimeric sequences in multiple sequence alignments [My Copy] Bioinformatics, Vol. 20, No. 14. (22 September 2004), pp. 2317-2319. by Thomas Huber, Geoffrey Faulkner, Philip Hugenholtz posted to chromosome metagenomics msa by djkt on 2008-07-24 18:12:09 as along with 3 people and 1 group ajsferreira esyoun mcox iSEEM
	Spatial and temporal heterogeneity in nucleotide sequence evolution. [My Copy] Molecular biology and evolution, Vol. 25, No. 8. (August 2008), pp. 1683-1694. by S. Whelan posted to conservation evolution molclock msa by djkt on 2008-07-18 21:05:56 as
	Phylogeny-Aware Gap Placement Prevents Errors in Sequence Alignment and Evolutionary Analysis [My Copy] Science, Vol. 320, No. 5883. (20 June 2008), pp. 1632-1635. by Ari Loytynoja, Nick Goldman posted to alignment evolution msa phylogenetics by djkt on 2008-06-20 16:18:18 as along with 29 people and 3 groups memerman operon TRHvidsten BioNica cmzmasek timflutre pradiptaray alexeid marti bpcusack hpaces dinnes gjuggler ArtemPankin phoenixzxl jago marck imtechnology aprasad zwang bmaust bpb michaelbarton Schmidtc AbnerCYH gulsacan emptyhb jlgreen nuin Khavkin's lab iSEEM Green Lab
	CSMET: comparative genomic motif detection via multi-resolution phylogenetic shadowing. [My Copy] PLoS computational biology, Vol. 4, No. 6. (6 June 2008), e1000090. by P. Ray, S. Shringarpure, M. Kolar, E. P. Xing posted to evolution msa tf by djkt on 2008-06-07 19:41:58 as along with 7 people and 1 group dquest emptyhb madreach xili03 cisevol Stew Ema cis-regulatory-evolution
	Investigations of Oligonucleotide Usage Variance Within and Between Prokaryotes [My Copy] posted to evolution microbes msa phylogenetics by djkt on 2008-04-19 05:19:34 as along with 1 person aprasad
	Performance and Scalability of Discriminative Metrics for Comparative Gene Identification in 12 Drosophila Genomes [My Copy] posted to evolution fly msa proteins by djkt on 2008-04-19 05:18:42 as
	Qualifying the relationship between sequence conservation and molecular function [My Copy] Genome Res., Vol. 18, No. 2. (1 February 2008), pp. 201-205. by Gregory M. Cooper, Christopher D. Brown posted to annotation msa review by djkt on 2008-02-01 19:09:40 as along with 7 people farhat emptyhb aprasad brant xingxu bpcusack nklee
	Confidence in comparative genomics. [My Copy] Genome research, Vol. 18, No. 2. (1 February 2008), pp. 199-200. by Elliott H. Margulies posted to msa review by djkt on 2008-02-01 19:09:02 as along with 7 people natstreet druvus pengchy treangen xingxu maximilianh boudinot
	Alignment Uncertainty and Genomic Analysis [My Copy] Science, Vol. 319, No. 5862. (25 January 2008), pp. 473-476. by Karen M. Wong, Marc A. Suchard, John P. Huelsenbeck posted to alignment msa by djkt on 2008-01-25 15:08:08 as along with 33 people and 2 groups Jporci operon walshtp darian ptrobajo friendpine skembel druvus treangen bpb aprasad dayjm pradiptaray dpollard tny cjeans zwang lisa1 cactus biomcgary lilou dandaman gjuggler renatomilani mclarenv youdon bpcusack guhjy jdelcampo adacier gracio timflutre jfr EisenLab microbiology_nijmegen
	Inferring Selection in Partially Sequenced Regions [My Copy] Mol Biol Evol (28 December 2007), msm273. by Jeffrey D. Jensen, Kevin R. Thornton, Charles F. Aquadro posted to msa selection by djkt on 2008-01-09 22:58:37 as along with 2 people and 1 group dmc smbe2008 Durbin group
	Adaptive Evolution of Conserved Noncoding Elements in Mammals [My Copy] PLoS Genetics, Vol. 3, No. 9. (1 September 2007), e147. by Su Y. Kim, Jonathan K. Pritchard posted to acceleration conservation evolution mammals msa by djkt on 2007-09-07 23:45:48 as along with 11 people and 5 groups sujaikumar sriesenfeld mattjb livingthingdan stajich Garamonfok cabbagezs Stew cisevol rrhudson bpcusack EisenLab ComplexAdaptiveSystems DSTO-CAS livingthing cis-regulatory-evolution
	Fast Pairwise Structural RNA Alignments by Pruning of the Dynamical Programming Matrix [My Copy] posted to msa rna by djkt on 2007-08-25 00:50:32 as
	Analyses of deep mammalian sequence alignments and constraint predictions for 1% of the human genome [My Copy] Genome Res., Vol. 17, No. 6. (1 June 2007), pp. 760-774. by Elliott H. Margulies, Gregory M. Cooper, George Asimenos, et al.Daryl J. Thomas, Colin N. Dewey, Adam Siepel, Ewan Birney, Damian Keefe, Ariel S. Schwartz, Minmei Hou, James Taylor, Sergey Nikolaev, Juan I. Montoya-Burgos, Ari Loytynoja, Simon Whelan, Fabio Pardi, Tim Massingham, James B. Brown, Peter Bickel, Ian Holmes, James C. Mullikin, Abel Ureta-Vidal, Benedict Paten, Eric A. Stone, Kate R. Rosenbloom, James W. Kent, Gerard G. Bouffard, Xiaobin Guan, Nancy F. Hansen, Jacquelyn R. Idol, Valerie V. Maduro, Baishali Maskeri, Jennifer C. Mcdowell, Morgan Park, Pamela J. Thomas, Alice C. Young, Robert W. Blakesley, Donna M. Muzny, Erica Sodergren, David A. Wheeler, Kim C. Worley, Huaiyang Jiang, George M. Weinstock, Richard A. Gibbs, Tina Graves, Robert Fulton, Elaine R. Mardis, Richard K. Wilson, Michele Clamp, James Cuff, Sante Gnerre, David B. Jaffe, Jean L. Chang, Kerstin Lindblad-Toh, Eric S. Lander, Angie Hinrichs, Heather Trumbower, Hiram Clawson, Ann Zweig, Robert M. Kuhn, Galt Barber, Rachel Harte, Donna Karolchik, Matthew A. Field, Richard A. Moore, Carrie A. Matthewson, Jacqueline E. Schein, Marco A. Marra, Stylianos E. Antonarakis, Serafim Batzoglou, Nick Goldman, Ross Hardison, David Haussler, Webb Miller, Lior Pachter, Eric D. Green, Arend Sidow posted to annotation conservation msa by djkt on 2007-06-14 01:05:24 as along with 11 people and 5 groups daveGerrard polivares timflutre aprasad dpollard dchughes AaronDarling ghattem Garamonfok gjuggler elfar BergmanLab Bioinformatics EisenLab G4ID Genetics-of-Gambling
	Genomic regulatory blocks encompass multiple neighboring genes and maintain conserved synteny in vertebrates [My Copy] Genome Res., Vol. 17, No. 5. (1 May 2007), pp. 545-555. by Hiroshi Kikuta, Mary Laplante, Pavla Navratilova, et al.Anna Z. Komisarczuk, Par G. Engstrom, David Fredman, Altuna Akalin, Mario Caccamo, Ian Sealy, Kerstin Howe, Julien Ghislain, Guillaume Pezeron, Philippe Mourrain, Staale Ellingsen, Andrew C. Oates, Christine Thisse, Bernard Thisse, Isabelle Foucher, Birgit Adolf, Andrea Geling, Boris Lenhard, Thomas S. Becker posted to evolution msa by djkt on 2007-05-03 19:30:18 as along with 3 people and 3 groups dchughes maximilianh boudinot Bioinformatics G4ID Genetics-of-Gambling
	Peptides Encoded by Short ORFs Control Development and Define a New Eukaryotic Gene Family [My Copy] posted to annotation msa by djkt on 2007-04-17 20:42:32 as
	Comparative sequence analyses reveal rapid and divergent evolutionary changes of the WFDC locus in the primate lineage [My Copy] Genome Res., Vol. 17, No. 3. (1 March 2007), pp. 276-286. by Belen Hurle, Willie Swanson, Nisc, Eric D. Green posted to acceleration evolution msa primates by djkt on 2007-03-01 18:21:05 as along with 1 person usagi-kirin
	Genomic Selective Constraints in Murids [My Copy] PLoS Genetics, Vol. preprint, No. 2006. (1 October 2006) by Daniel Gaffney, Peter Keightley posted to conservation evolution msa rodents selection by djkt on 2006-10-20 20:27:57 as
	Evolutionary simulations to detect functional lineage-specific genes [My Copy] Bioinformatics, Vol. 22, No. 15. (1 August 2006), pp. 1815-1822. by Isabelle Dupanloup, Henrik Kaessmann posted to acceleration conservation evolution msa phylogenetics by djkt on 2006-09-01 16:12:34 as along with 3 people druvus bpcusack BioNica
	Sequence and comparative analysis of the chicken genome provide unique perspectives on vertebrate evolution [My Copy] Nature, Vol. 432, No. 7018. (9 December 2004), pp. 695-716. posted to genome msa by djkt on 2006-08-04 01:38:53 as along with 7 people and 4 groups gdb taroleo aprasad dchughes dullhunk harikrishna jandot hst-bmi Bioinformatics G4ID Genetics-of-Gambling
	A distal enhancer and an ultraconserved exon are derived from a novel retroposon [My Copy] Nature (16 April 2006) by Gill Bejerano, Craig B. Lowe, Nadav Ahituv, et al.Bryan King, Adam Siepel, Sofie R. Salama, Edward M. Rubin, James W. Kent, David Haussler posted to conservation evolution indel msa by djkt on 2006-08-04 01:30:14 as along with 5 people and 6 groups marcius dchughes nickluscombe cisevol gjuggler G4ID EBI-regulation BioinfoCIPF SGU-CIPF Genetics-of-Gambling cis-regulatory-evolution
	Genomics. Vertebrate genomes compared [My Copy] Science, Vol. 297 (2002), pp. 1283-1285. by S. B. Hedges, S. Kumar posted to divergence msa phylogenetics by djkt on 2006-08-04 01:21:22 as
	The ENCODE (ENCyclopedia Of DNA Elements) Project. [My Copy] Science (New York, N.Y.), Vol. 306, No. 5696. (22 October 2004), pp. 636-640. by posted to arrays chip-chip expression genome msa by djkt on 2006-08-04 01:17:10 as along with 13 people and 1 group timhubbard polivares ilyashl raistrick setar balajis skhadar qfwills frohike JeffR100 olympos hpaces siebert Bioinformatics
	Human-zebrafish non-coding conserved elements act in vivo to regulate transcription [My Copy] Nucl. Acids Res., Vol. 33, No. 17. (22 September 2005), pp. 5437-5445. by Jordan T. Shin, James R. Priest, Ivan Ovcharenko, et al.Amy Ronco, Rachel K. Moore, Geoffrey C. Burns, Calum A. Macrae posted to conservation expression msa by djkt on 2006-08-04 01:06:17 as along with 1 person maximilianh
	Transcription regulation and animal diversity [My Copy] Nature, Vol. 424, No. 6945. (10 July 2003), pp. 147-151. by Michael Levine, Robert Tjian posted to divergence expression msa review by djkt on 2006-08-04 01:04:29 as along with 10 people and 3 groups maximilianh provero dlobo Lauren_Jones xico nickluscombe lusk Jporci heliopais brant GEB WetBiology EBI-regulation
	Highly conserved non-coding sequences are associated with vertebrate development. [My Copy] PLoS Biol, Vol. 3, No. 1. (January 2005) by A. Woolfe, M. Goodson, D. K. Goode, et al.P. Snell, G. K. McEwen, T. Vavouri, S. F. Smith, P. North, H. Callaway, K. Kelly, K. Walter, I. Abnizova, W. Gilks, Y. J. Edwards, J. E. Cooke, G. Elgar posted to conservation expression msa by djkt on 2006-08-04 01:02:55 as along with 12 people and 3 groups daveGerrard aprasad diamantis nklee bryankr awoolfe sujaikumar Stew maximilianh cisevol rrhudson gelgar BergmanLab EisenLab cis-regulatory-evolution
	Scanning Human Gene Deserts for Long-Range Enhancers [My Copy] Science, Vol. 302, No. 5644. (17 October 2003), 413. by Marcelo A. Nobrega, Ivan Ovcharenko, Veena Afzal, Edward M. Rubin posted to conservation expression msa by djkt on 2006-08-04 01:02:14 as along with 5 people gderwin elzodw maximilianh heliopais blobbybirdman
	CONSERVED NON-GENIC SEQUENCES - AN UNEXPECTED FEATURE OF MAMMALIAN GENOMES [My Copy] Nat Rev Genet, Vol. 6, No. 2. (February 2005), pp. 151-157. by Emmanouil T. Dermitzakis, Alexandre Reymond, Stylianos E. Antonarakis posted to conservation msa by djkt on 2006-08-04 00:51:49 as along with 1 person sujaikumar
	BLAT--the BLAST-like alignment tool. [My Copy] Genome research, Vol. 12, No. 4. (1 April 2002), pp. 656-664. by W. James Kent posted to genome msa by djkt on 2006-08-04 00:50:51 as along with 37 people and 3 groups azazello rshe dchughes rdowell gwallau druvus aprasad maria_hauser n00c sficklin Thaverkamp cpwardell daveGerrard coela daforerog pwais umit mmartin paszkows operon miguel pcahan1 Ayest indigoviolet mtagaya treangen michC timflutre olympos cjeans wenhan natstreet antonkratz yoanjacquemin talponer bozdagd gpappas LabDros BergmanLab EisenLab
	The UCSC Genome Browser Database. [My Copy] Nucleic acids research, Vol. 31, No. 1. (1 January 2003), pp. 51-54. by D. Karolchik, R. Baertsch, M. Diekhans, et al.T. S. Furey, A. Hinrichs, Y. T. Lu, K. M. Roskin, M. Schwartz, C. W. Sugnet, D. J. Thomas, R. J. Weber, D. Haussler, W. J. Kent, University of California Santa Cruz posted to genome msa by djkt on 2006-08-04 00:50:05 as along with 2 people fisherp devakiram
	Comparative Recombination Rates in the Rat, Mouse, and Human Genomes [My Copy] Genome Res., Vol. 14, No. 4. (1 April 2004), pp. 528-538. by Michael I. Jensen-Seaman, Terrence S. Furey, Bret A. Payseur, et al.Yontao Lu, Krishna M. Roskin, Chin-Fu Chen, Michael A. Thomas, David Haussler, Howard J. Jacob posted to msa recombination rodents by djkt on 2006-08-04 00:47:27 as
	A Test of Neutral Molecular Evolution Based on Nucleotide Data [My Copy] Genetics, Vol. 116, No. 1. (1 May 1987), pp. 153-159. by Richard R. Hudson, Martin Kreitman, Montserrat Aguade posted to acceleration molclock msa selection by djkt on 2006-08-04 00:44:54 as along with 2 people and 1 group renewang kaspermunch Bioinformatics
	On the use of nucleic acid sequences to infer early branchings in the tree of life [My Copy] Mol Biol Evol, Vol. 12, No. 3. (1 May 1995), pp. 451-458. by Z. Yang, D. Roberts posted to evolution msa phylogenetics by djkt on 2006-08-04 00:38:57 as along with 1 person oannes
	Evolutionary trees from DNA sequences: a maximum likelihood approach. [My Copy] Journal of molecular evolution, Vol. 17, No. 6. (1981), pp. 368-376. by J. Felsenstein posted to evolution msa phylogenetics by djkt on 2006-08-04 00:38:05 as along with 10 people and 1 group gjuggler BioNica alexeid bpb chrn kaspermunch dquest timflutre dmc elfar Bioinformatics
	Evolutionarily conserved elements in vertebrate, insect, worm, and yeast genomes. [My Copy] Genome Res, Vol. 15, No. 8. (August 2005), pp. 1034-1050. by A. Siepel, G. Bejerano, J. S. Pedersen, et al.A. S. Hinrichs, M. Hou, K. Rosenbloom, H. Clawson, J. Spieth, L. W. Hillier, S. Richards, G. M. Weinstock, R. K. Wilson, R. A. Gibbs, W. J. Kent, W. Miller, D. Haussler posted to conservation evolution msa phylogenetics selection by djkt on 2006-08-04 00:33:54 as along with 20 people and 4 groups thegoose2 farhat skembel alessandroparini tharris bpb aprasad balajis eckart_bindewald indigoviolet brant pradiptaray adepace olympos sujaikumar Stew cisevol dmc elfar AlexanderPico C. elegans / WormBase EisenLab cis-regulatory-evolution ConklinLab
	Ultraconserved Elements in the Human Genome [My Copy] Science, Vol. 304, No. 5675. (28 May 2004), pp. 1321-1325. by Gill Bejerano, Michael Pheasant, Igor Makunin, et al.Stuart Stephen, W. James Kent, John S. Mattick, David Haussler posted to conservation evolution msa selection by djkt on 2006-08-04 00:25:35 as along with 18 people and 5 groups clearbluespring daforerog ilyashl treangen Ema karbak barry ujh alexisgallagher bpb aprasad balicea dchughes pradiptaray sujaikumar blobbybirdman cisevol fpattyn structural_bioinformatics Bioinformatics G4ID Genetics-of-Gambling cis-regulatory-evolution
	Phylogenetic estimation of context-dependent substitution rates by maximum likelihood. [My Copy] Mol Biol Evol, Vol. 21, No. 3. (March 2004), pp. 468-488. by A. Siepel, D. Haussler posted to hmm msa phylogenetics by djkt on 2006-08-04 00:21:46 as along with 6 people mgledi sriesenfeld mdimmic penka tale uwe
	Combining phylogenetic and hidden Markov models in biosequence analysis [My Copy] Journal of Computational Biology, Vol. 11, No. 2-3. (2004), pp. 413-428. by Adam Siepel, David Haussler posted to hmm msa phylogenetics by djkt on 2006-08-04 00:19:37 as
	Aligning multiple genomic sequences with the threaded blockset aligner. [My Copy] Genome research, Vol. 14, No. 4. (April 2004), pp. 708-715. by Mathieu Blanchette, W. James Kent, Cathy Riemer, et al.Laura Elnitski, Arian F. Smit, Krishna M. Roskin, Robert Baertsch, Kate Rosenbloom, Hiram Clawson, Eric D. Green, David Haussler, Webb Miller posted to msa by djkt on 2006-08-04 00:09:14 as along with 13 people and 1 group roys emptyhb nuin aprasad APRegier operon ujh indigoviolet csardas yylin Neeperando maralena AlexanderPico EisenLab
	Genome sequence of the Brown Norway rat yields insights into mammalian evolution. [My Copy] Nature, Vol. 428, No. 6982. (1 April 2004), pp. 493-521. by R. A. Gibbs, G. M. Weinstock, M. L. Metzker, et al.D. M. Muzny, E. J. Sodergren, S. Scherer, G. Scott, D. Steffen, K. C. Worley, P. E. Burch, G. Okwuonu, S. Hines, L. Lewis, C. DeRamo, O. Delgado, S. Dugan-Rocha, G. Miner, M. Morgan, A. Hawes, R. Gill, Celera, R. A. Holt, M. D. Adams, P. G. Amanatides, H. Baden-Tillson, M. Barnstead, S. Chin, C. A. Evans, S. Ferriera, C. Fosler, A. Glodek, Z. Gu, D. Jennings, C. L. Kraft, T. Nguyen, C. M. Pfannkoch, C. Sitter, G. G. Sutton, J. C. Venter, T. Woodage, D. Smith, H. M. Lee, E. Gustafson, P. Cahill, A. Kana, L. Doucette-Stamm, K. Weinstock, K. Fechtel, R. B. Weiss, D. M. Dunn, E. D. Green, R. W. Blakesley, G. G. Bouffard, P. J. De Jong, K. Osoegawa, B. Zhu, M. Marra, J. Schein, I. Bosdet, C. Fjell, S. Jones, M. Krzywinski, C. Mathewson, A. Siddiqui, N. Wye, J. McPherson, S. Zhao, C. M. Fraser, J. Shetty, S. Shatsman, K. Geer, Y. Chen, S. Abramzon, W. C. Nierman, P. H. Havlak, R. Chen, K. J. Durbin, A. Egan, Y. Ren, X. Z. Song, B. Li, Y. Liu, X. Qin, S. Cawley, K. C. Worley, A. J. Cooney, L. M. D'Souza, K. Martin, J. Q. Wu, M. L. Gonzalez-Garay, A. R. Jackson, K. J. Kalafus, M. P. McLeod, A. Milosavljevic, D. Virk, A. Volkov, D. A. Wheeler, Z. Zhang, J. A. Bailey, E. E. Eichler, E. Tuzun, E. Birney, E. Mongin, A. Ureta-Vidal, C. Woodwark, E. Zdobnov, P. Bork, M. Suyama, D. Torrents, M. Alexandersson, B. J. Trask, J. M. Young, H. Huang, H. Wang, H. Xing, S. Daniels, D. Gietzen, J. Schmidt, K. Stevens, U. Vitt, J. Wingrove, F. Camara, M. Mar Albà, J. F. Abril, R. Guigo, A. Smit, I. Dubchak, E. M. Rubin, O. Couronne, A. Poliakov, N. Hübner, D. Ganten, C. Goesele, O. Hummel, T. Kreitler, Y. A. Lee, J. Monti, H. Schulz, H. Zimdahl, H. Himmelbauer, H. Lehrach, H. J. Jacob, S. Bromberg, J. Gullings-Handley, M. I. Jensen-Seaman, A. E. Kwitek, J. Lazar, D. Pasko, P. J. Tonellato, S. Twigger, C. P. Ponting, J. M. Duarte, S. Rice, L. Goodstadt, S. A. Beatson, R. D. Emes, E. E. Winter, C. Webber, P. Brandt, G. Nyakatura, M. Adetobi, F. Chiaromonte, L. Elnitski, P. Eswara, R. C. Hardison, M. Hou, D. Kolbe, K. Makova, W. Miller, A. Nekrutenko, C. Riemer, S. Schwartz, J. Taylor, S. Yang, Y. Zhang, K. Lindpaintner, T. D. Andrews, M. Caccamo, M. Clamp, L. Clarke, V. Curwen, R. Durbin, E. Eyras, S. M. Searle, G. M. Cooper, S. Batzoglou, M. Brudno, A. Sidow, E. A. Stone, J. C. Venter, B. A. Payseur, G. Bourque, C. López-Otín, X. S. Puente, K. Chakrabarti, S. Chatterji, C. Dewey, L. Pachter, N. Bray, V. B. Yap, A. Caspi, G. Tesler, P. A. Pevzner, D. Haussler, K. M. Roskin, R. Baertsch, H. Clawson, T. S. Furey, A. S. Hinrichs, D. Karolchik, W. J. Kent, K. R. Rosenbloom, H. Trumbower, M. Weirauch, D. N. Cooper, P. D. Stenson, B. Ma, M. Brent, M. Arumugam, D. Shteynberg, R. R. Copley, M. S. Taylor, H. Riethman, U. Mudunuri, J. Peterson, M. Guyer, A. Felsenfeld, S. Old, S. Mockrin, F. Collins, posted to evolution genome msa rodents by djkt on 2006-08-04 00:08:00 as along with 7 people and 4 groups taroleo gjuggler aprasad ccots rvosa dchughes stajich FAB-lab G4ID Genetics-of-Gambling Mycology

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evolution	390
expression	250
popgen	214
selection	128
snps	126
proteins	116
human	108
metagenomics	106
microbes	101
sequencing	97
tf	96
phylogenetics	86
duplication	84
primates	83
rna	83
association	75
review	70
fly	63
conservation	59
msa	59
acceleration	57
chromatin	54
epigenetics	53
sv	51
recombination	49
yeast	47
qtl	46
arrays	44
indel	43
ecology	41
development	39
annotation	37
chromosome	36
alignment	35
diversity	34
motif	34
prediction	32
genome	31
mtp	31
rodents	31
mammals	29
repeats	27
testing	27
disease	24
divergence	23
splicing	22
chip-chip	21
demography	21
histone	21
mutation	21
variation	20
sysbio	19
molclock	18
simulation	18
virus	18
methylation	17
bgc	16
admixture	15
bayesian	15
imprinting	15
bias	14
microbiome	14
speciation	14
clustering	13
estimation	13
gccontent	13
nucleosome	13
db	12
genotyping	12
assembly	11
hmm	11
intron	11
cpg	10
domestication	10
enhancer	10
hiv	10
sex	10
stemcells	10
cancer	9
migration	9
model_selection	9
promoter	9
structure	9
design	8
environment	8
haplotype	8
community	7
dog	7
isochores	7
resampling	7
bacteria	6
brain	6
geography	6
lactation	6
replication	6
schizophrenia	6
ancient_dna	5
computing	5
foxp2	5
immunity	4
kmer	4
model	4
pathogen	4
power	4
reconstruction	4
worm	4
bioinfo	3
drift	3
gene-transfer	3
go	3
neanderthal	3
pax6	3
plants	3
synteny	3
theory	3
vertebrates	3
viualization	3
acertainment	2
aging	2
cardiovascular	2
classification	2
coalescent	2
correlation	2
diet	2
epistasis	2
ethics	2
fish	2
heterochromatin	2
mixture	2
network	2
novel	2
signalling	2
species_abundance	2
ultras	2
archaea	1
archeology	1
birds	1
centromeres	1
codon	1
ctcf	1
dimension_reduction	1
distribution	1
dna	1
enzymes	1
epidemiology	1
eukaryotes	1
forensics	1
gene_therapy	1
genome_size	1
heart	1
lactase	1
lineage_sorting	1
localization	1
lrt	1
metabolism	1
metabolomics	1
microsatellite	1
mirna	1
olfaction	1
pca	1
phosphorylation	1
placenta	1
ptmass	1
reelin	1
repeated_measures	1
roc	1
svd	1
teaching	1
teeth	1
transgenic	1
utr	1
vision	1
workflow	1

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