djkt's prediction [32 articles] Export

Recent papers added to djkt's library classified by the tag prediction. You can also see everyone's prediction.

	The relationship between Precision-Recall and ROC curves [My Copy] In ICML '06: Proceedings of the 23rd international conference on Machine learning (2006), pp. 233-240. by Jesse Davis, Mark Goadrich posted to roc prediction by djkt on 2009-11-14 20:08:06 as along with 8 people laral rlichten msampson abellogin yaroslavvb imrchen hehrig tvdbulck
	Motif-blind, genome-wide discovery of cis-regulatory modules in Drosophila and mouse. [My Copy] Developmental cell, Vol. 17, No. 4. (20 October 2009), pp. 568-579. by Miriam R. Kantorovitz, Majid Kazemian, Sarah Kinston, et al.Diego Miranda-Saavedra, Qiyun Zhu, Gene E. Robinson, Berthold Göttgens, Marc S. Halfon, Saurabh Sinha posted to tf rodents prediction human fly enhancer development by djkt on 2009-11-04 20:55:41 as along with 1 person maximilianh
	Empirical Bayes Estimates for Large-Scale Prediction Problems [My Copy] JASA, Vol. 104, pp. 1015-1028. by Bradley Efron posted to testing prediction by djkt on 2009-11-02 19:20:15 as along with 1 person rdiaz
	Conserved Expression Patterns Predict microRNA Targets [My Copy] PLoS Comput Biol, Vol. 5, No. 9. (25 September 2009), e1000513. by William Ritchie, Megha Rajasekhar, Stephane Flamant, John E. J. Rasko posted to rna prediction expression by djkt on 2009-09-25 19:52:26 as along with 11 people and 1 group jperkins heliopais gdb samgj ealloza toni_marco neils ptrobajo al2na TRHvidsten cisevol microRNA
	Genomic Features That Predict Allelic Imbalance in Humans Suggest Patterns of Constraint on Gene Expression Variation [My Copy] Mol Biol Evol, Vol. 26, No. 9. (1 September 2009), pp. 2047-2059. by Jenny Tung, Olivier Fedrigo, Ralph Haygood, Sayan Mukherjee, Gregory A. Wray posted to variation snps prediction human expression evolution by djkt on 2009-08-13 22:55:29 as along with 1 person aprasad
	Predictor correlation impacts machine learning algorithms: implications for genomic studies [My Copy] Bioinformatics, Vol. 25, No. 15. (1 August 2009), pp. 1884-1890. by Kristin K. Nicodemus, James D. Malley posted to prediction by djkt on 2009-07-18 00:48:29 as along with 4 people and 1 group rdiaz ollieredfernwork TRHvidsten mhamada Orengo Group Journal Picks
	Identification of Yeast Transcriptional Regulation Networks Using Multivariate Random Forests [My Copy] PLoS Comput Biol, Vol. 5, No. 6. (19 June 2009), e1000414. by Yuanyuan Xiao, Mark R. Segal posted to chip-chip expression motif prediction sysbio yeast by djkt on 2009-06-19 16:22:10 as along with 2 people ptrobajo TRHvidsten
	A simulation-approximation approach to sample size planning for high-dimensional classification studies [My Copy] Biostat, Vol. 10, No. 3. (1 July 2009), pp. 424-435. by Perry de Valpine, Hans-Marcus Bitter, Michael P. S. Brown, Jonathan Heller posted to design prediction simulation by djkt on 2009-06-17 16:16:28 as along with 3 people rdiaz dekay23 guhjy
	Toward a gold standard for promoter prediction evaluation. [My Copy] Bioinformatics (Oxford, England), Vol. 25, No. 12. (15 June 2009), pp. i313-320. by Thomas Abeel, Yves Van de Peer, Yvan Saeys posted to prediction promoter by djkt on 2009-05-28 23:38:18 as along with 6 people and 1 group daforerog dquest marti druvus AlexBateman tonamswish Journal picks
	A Classifier-based approach to identify genetic similarities between diseases [My Copy] Bioinformatics, Vol. 25, No. 12. (15 June 2009), pp. i21-29. by Marc A. Schaub, Irene M. Kaplow, Marina Sirota, Chuong B. Do, Atul J. Butte, Serafim Batzoglou posted to association prediction by djkt on 2009-05-28 23:30:05 as along with 4 people jfr zufar rdiaz ddunbar
	An integrative scoring system for ranking SNPs by their potential deleterious effects. [My Copy] Bioinformatics (Oxford, England), Vol. 25, No. 8. (15 April 2009), pp. 1048-1055. by Phil Hyoun H. Lee, Hagit Shatkay posted to disease prediction snps by djkt on 2009-04-08 17:01:38 as along with 6 people and 1 group jandot daforerog george_g rdiaz Zephyrus pkonings Roswell Cancer Crosstalk
	A method for constructing a confidence bound for the actual error rate of a prediction rule in high dimensions [My Copy] Biostat, Vol. 10, No. 2. (1 April 2009), pp. 282-296. by Kevin K. Dobbin posted to prediction by djkt on 2009-02-28 02:49:46 as along with 3 people jfr rdiaz lptolik
	High-resolution human core-promoter prediction with CoreBoost_HM [My Copy] Genome Research, Vol. 19, 266. by Xiaowo Wang posted to annotation expression histone prediction by djkt on 2009-02-10 00:44:37 as
	Interpretation of Genetic Association Studies: Markers with Replicated Highly Significant Odds Ratios May Be Poor Classifiers [My Copy] PLoS Genet, Vol. 5, No. 2. (6 February 2009), e1000337. by Johanna Jakobsdottir, Michael B. Gorin, Yvette P. Conley, Robert E. Ferrell, Daniel E. Weeks posted to association prediction by djkt on 2009-02-06 19:23:20 as along with 9 people and 1 group xingxu rdiaz sg45653 jessopher pkonings Zephyrus psique mdharsee wimufi Roswell Cancer Crosstalk
	Distinct Modes of Regulation by Chromatin Encoded through Nucleosome Positioning Signals [My Copy] PLoS Comput Biol, Vol. 4, No. 11. (7 November 2008), e1000216. by Yair Field, Noam Kaplan, Yvonne Fondufe-Mittendorf, et al.Irene K. Moore, Eilon Sharon, Yaniv Lubling, Jonathan Widom, Eran Segal posted to chromatin nucleosome prediction by djkt on 2008-11-08 19:07:52 as along with 4 people and 1 group gdb cisevol cabbagesofdoom caseybrown JLab
	ChromaSig: A Probabilistic Approach to Finding Common Chromatin Signatures in the Human Genome [My Copy] PLoS Comput Biol, Vol. 4, No. 10. (17 October 2008), e1000201. by Gary Hon, Bing Ren, Wei Wang posted to chromatin epigenetics prediction tf by djkt on 2008-10-17 18:10:58 as along with 6 people darian sebastien_vigneau ewilban1 guhjy magusina inesdesantiago
	Semi-supervised methods to predict patient survival from gene expression data. [My Copy] PLoS Biol, Vol. 2, No. 4. (April 2004) by E. Bair, R. Tibshirani posted to arrays expression prediction by djkt on 2008-09-26 22:56:34 as along with 5 people srp33 kristen winterschlaefer jfr rdiaz
	Predicting Human Nucleosome Occupancy from Primary Sequence [My Copy] PLoS Comput Biol, Vol. 4, No. 8. (22 August 2008), e1000134. by Shobhit Gupta, Jonathan Dennis, Robert E. Thurman, Robert Kingston, John A. Stamatoyannopoulos, William S. Noble posted to epigenetics nucleosome prediction by djkt on 2008-08-22 18:17:54 as along with 4 people gdb madreach Stew aalibes
	Predicting functional regulatory polymorphisms [My Copy] Bioinformatics, Vol. 24, No. 16. (15 August 2008), pp. 1787-1792. by Ali Torkamani, Nicholas J. Schork posted to prediction snps tf by djkt on 2008-08-09 17:13:40 as along with 4 people giovanni greg guhjy ramensky
	Biological sequence classification utilizing positive and unlabeled data. [My Copy] Bioinformatics (14 March 2008) by Yuanyuan Xiao, Mark R R. Segal posted to prediction by djkt on 2008-04-25 19:39:22 as along with 4 people eckart_bindewald mdstobbe guhjy ptrobajo
	Detecting high-order interactions of single nucleotide polymorphisms using genetic programming. [My Copy] Bioinformatics (Oxford, England), Vol. 23, No. 24. (15 December 2007), pp. 3280-3288. by Robin Nunkesser, Thorsten Bernholt, Holger Schwender, Katja Ickstadt, Ingo Wegener posted to association prediction by djkt on 2007-12-07 16:17:08 as along with 5 people daforerog guhjy bicko brant balicea
	Large scale genotype-phenotype correlation analysis based on phylogenetic trees. [My Copy] Bioinformatics (31 January 2007) by Farhat Habib, Andrew D D. Johnson, Ralf Bundschuh, Daniel Janies posted to association phylogenetics prediction by djkt on 2007-04-26 20:43:08 as along with 4 people shigepong smbe2008 balicea farhat
	Increasing the Power to Detect Causal Associations by Combining Genotypic and Expression Data in Segregating Populations [My Copy] posted to arrays association expression genotyping prediction by djkt on 2007-04-13 20:36:46 as
	Integration of Genome and Chromatin Structure with Gene Expression Profiles To Predict c-MYC Recognition Site Binding and Function [My Copy] posted to chromatin expression prediction by djkt on 2007-04-07 01:22:00 as
	Distinct and predictive chromatin signatures of transcriptional promoters and enhancers in the human genome [My Copy] Nat Genet, Vol. 39, No. 3. (04 February 2007), pp. 311-318. by Nathaniel D. Heintzman, Rhona K. Stuart, Gary Hon, et al.Yutao Fu, Christina W. Ching, R. David Hawkins, Leah O. Barrera, Sara Van Calcar, Chunxu Qu, Keith A. Ching, Wei Wang, Zhiping Weng, Roland D. Green, Gregory E. Crawford, Bing Ren posted to chromatin expression prediction by djkt on 2007-02-26 22:27:58 as along with 12 people and 2 groups tonamswish hagechouchin443 suizifish absterga raylim kengg mgaldzic olympos skoch3 epigenetics caseybrown inesdesantiago CHIP Plantandetc
	Functional Impact of Missense Variants in BRCA1 Predicted by Supervised Learning [My Copy] posted to prediction snps by djkt on 2007-02-16 18:04:19 as
	Genomic sweeping for hypermethylated genes [My Copy] Bioinformatics, Vol. 23, No. 3. (1 February 2007), pp. 281-288. by Liang Goh, Susan K. Murphy, Sayan Muhkerjee, Terrence S. Furey posted to prediction imprinting by djkt on 2007-02-02 17:44:49 as along with 1 person and 1 group mgaldzic CHIP
	A supervised hidden Markov model framework for efficiently segmenting tiling array data in transcriptional and ChIP-chip experiments: systematically incorporating validated biological knowledge. [My Copy] Bioinformatics (12 October 2006) by Jiang Du, Joel S S. Rozowsky, Jan O O. Korbel, et al.Zhengdong D D. Zhang, Thomas E E. Royce, Martin H H. Schultz, Michael Snyder, Mark Gerstein posted to arrays chip-chip hmm prediction by djkt on 2006-12-02 16:49:13 as along with 9 people and 2 groups talponer bais miguel tuck eckart_bindewald SeungjoonOh blobbybirdman inesdesantiago xingxu Bioinformatics UH - Computational Biology
	Statistical Inference for Variable Importance [My Copy] The International Journal of Biostatistics, Vol. 2, No. 1. (2006), article 2. by M. J. van der Laan posted to prediction by djkt on 2006-08-03 22:36:25 as
	Survival prediction of diffuse large-B-cell lymphoma based on both clinical and gene expression information [My Copy] Bioinformatics, Vol. 22, No. 4. (15 February 2006), pp. 466-471. by Lexin Li posted to arrays prediction by djkt on 2006-08-03 22:33:16 as
	Microarray gene expression data with linked survival phenotypes: diffuse large-B-cell lymphoma revisited [My Copy] Biostatistics, Vol. 7, No. 2. (April 2006), pp. 268-285. by Segal, R. Mark posted to arrays prediction by djkt on 2006-08-03 22:32:35 as along with 2 people jfr rdiaz
	Dimension Reduction for Classification with Gene Expression Microarray Data [My Copy] Statistical Applications in Genetics and Molecular Biology, Vol. 5, No. 1. (2006), article 6. by Jian J. Dai, Linh Lieu, David Rocke posted to arrays prediction by djkt on 2006-08-03 22:31:27 as along with 3 people akastrin rdiaz mmunson

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evolution	392
expression	261
popgen	217
selection	130
snps	127
proteins	117
human	114
metagenomics	106
microbes	105
tf	100
sequencing	97
phylogenetics	87
duplication	85
primates	84
rna	84
association	75
review	70
fly	64
conservation	63
msa	59
acceleration	57
epigenetics	56
chromatin	56
sv	52
recombination	52
yeast	48
qtl	46
indel	44
arrays	44
ecology	41
motif	39
development	39
chromosome	37
annotation	37
alignment	35
diversity	34
rodents	32
prediction	32
mtp	31
genome	31
mammals	30
testing	27
repeats	27
divergence	24
disease	24
splicing	23
histone	23
demography	23
mutation	21
chip-chip	21
variation	20
sysbio	20
methylation	19
virus	18
simulation	18
molclock	18
admixture	17
bgc	16
imprinting	16
bayesian	15
microbiome	15
bias	14
speciation	14
estimation	13
clustering	13
nucleosome	13
stemcells	13
gccontent	13
genotyping	12
db	12
hmm	11
enhancer	11
intron	11
assembly	11
domestication	10
sex	10
hiv	10
cpg	10
cancer	9
structure	9
promoter	9
migration	9
model_selection	9
haplotype	8
design	8
environment	8
dog	7
isochores	7
resampling	7
community	7
schizophrenia	6
lactation	6
geography	6
replication	6
bacteria	6
brain	6
computing	5
foxp2	5
ancient_dna	5
worm	5
power	4
reconstruction	4
model	4
kmer	4
immunity	4
pathogen	4
gene-transfer	3
plants	3
go	3
synteny	3
bioinfo	3
theory	3
vertebrates	3
pax6	3
viualization	3
drift	3
ctcf	3
neanderthal	3
coalescent	2
correlation	2
ultras	2
signalling	2
diet	2
fish	2
heterochromatin	2
cardiovascular	2
metabolomics	2
network	2
classification	2
species_abundance	2
ethics	2
mixture	2
acertainment	2
novel	2
epistasis	2
aging	2
epidemiology	1
vision	1
workflow	1
distribution	1
lineage_sorting	1
svd	1
transgenic	1
dimension_reduction	1
pca	1
birds	1
mirna	1
centromeres	1
meiosis	1
archaea	1
genome_size	1
enzymes	1
teaching	1
roc	1
teeth	1
lrt	1
phosphorylation	1
localization	1
proteomics	1
heart	1
utr	1
operons	1
gene_therapy	1
metabolism	1
microsatellite	1
repeated_measures	1
eukaryotes	1
reelin	1
placenta	1
lactase	1
olfaction	1
codon	1
archeology	1
ptmass	1
dna	1
forensics	1

djkt's prediction [32 articles] Export

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