djkt's qtl [46 articles] Export

Recent papers added to djkt's library classified by the tag qtl. You can also see everyone's qtl.

	Global patterns of cis variation in human cells revealed by high-density allelic expression analysis [My Copy] Nature Genetics, Vol. 41, No. 11. (18 October 2009), pp. 1216-1222. by Bing Ge, Dmitry K. Pokholok, Tony Kwan, et al.Elin Grundberg, Lisanne Morcos, Dominique J. Verlaan, Jennie Le, Vonda Koka, Kevin C. L. Lam, Vincent Gagne, Joana Dias, Rose Hoberman, Alexandre Montpetit, Marie-Michele Joly, Edward J. Harvey, Daniel Sinnett, Patrick Beaulieu, Robert Hamon, Alexandru Graziani, Ken Dewar, Eef Harmsen, Jacek Majewski, Harald H. H. Goring, Anna K. Naumova, Mathieu Blanchette, Kevin L. Gunderson, Tomi Pastinen posted to variation qtl human expression by djkt on 2009-10-28 16:45:34 as along with 10 people and 1 group bpcusack fenghezi songpku gderwin qayub dill2009 zufar psique daforerog vplagnol Journal picks
	Common Regulatory Variation Impacts Gene Expression in a Cell Type-Dependent Manner [My Copy] Science, Vol. 325, No. 5945. (4 September 2009), pp. 1246-1250. by Antigone S. Dimas, Samuel Deutsch, Barbara E. Stranger, et al.Stephen B. Montgomery, Christelle Borel, Homa Attar-Cohen, Catherine Ingle, Claude Beazley, Maria G. Arcelus, Magdalena Sekowska, Marilyne Gagnebin, James Nisbett, Panos Deloukas, Emmanouil T. Dermitzakis, Stylianos E. Antonarakis posted to variation snps qtl human expression by djkt on 2009-09-05 01:15:09 as along with 12 people vplagnol cajunsushi ajbattle xianjun kintoki TRHvidsten fenghezi rdiaz humburg guhjy frohike SeaBird
	Statistical Estimation of Correlated Genome Associations to a Quantitative Trait Network [My Copy] PLoS Genet, Vol. 5, No. 8. (14 August 2009), e1000587. by Seyoung Kim, Eric P. Xing posted to sysbio qtl association by djkt on 2009-08-31 19:40:06 as along with 3 people rdiaz engelhardt pkonings
	Mapping in Structured Populations by Resample Model Averaging [My Copy] Genetics, Vol. 182, No. 4. (1 August 2009), pp. 1263-1277. by William Valdar, Christopher C. Holmes, Richard Mott, Jonathan Flint posted to simulation qtl by djkt on 2009-08-21 01:14:39 as
	Genetic Architecture of Tameness in a Rat Model of Animal Domestication [My Copy] Genetics, Vol. 182, No. 2. (1 June 2009), pp. 541-554. by Frank W. Albert, Orjan Carlborg, Irina Plyusnina, et al.Francois Besnier, Daniela Hedwig, Susann Lautenschlager, Doreen Lorenz, Jenny Mcintosh, Christof Neumann, Henning Richter, Claudia Zeising, Rimma Kozhemyakina, Olesya Shchepina, Jurgen Kratzsch, Lyudmila Trut, Daniel Teupser, Joachim Thiery, Torsten Schoneberg, Leif Andersson, Svante Paabo posted to domestication qtl rodents by djkt on 2009-06-08 23:06:53 as
	Multiple-Interval Mapping for Quantitative Trait Loci With a Spike in the Trait Distribution [My Copy] Genetics, Vol. 182, No. 1. (1 May 2009), pp. 337-342. by Wenyun Li, Zehua Chen posted to qtl by djkt on 2009-04-29 22:36:13 as
	Expression quantitative trait loci mapping with multivariate sparse partial least squares regression. [My Copy] Genetics, Vol. 182, No. 1. (1 May 2009), pp. 79-90. by H. Chun, S. Keles posted to expression qtl by djkt on 2009-04-29 22:33:51 as along with 1 person guhjy
	QTL global meta-analysis: are trait determining genes clustered? [My Copy] BMC Genomics, Vol. 10, No. 1. (2009), 184. by Hanni Salih, David Adelson posted to clustering qtl by djkt on 2009-04-24 19:53:26 as along with 2 people natstreet guhjy
	Score Statistics for Mapping Quantitative Trait Loci [My Copy] Statistical Applications in Genetics and Molecular Biology, Vol. 8, No. 1., article 16. by Myron N. Chang, Rongling Wu, Samuel S. Wu, George Casella posted to qtl by djkt on 2009-04-07 20:05:48 as
	Network-based multiple locus linkage analysis of expression traits [My Copy] Bioinformatics, Vol. 25, No. 11. (1 June 2009), pp. 1390-1396. by Wei Pan posted to expression qtl by djkt on 2009-04-07 19:51:25 as along with 4 people rdiaz ajbattle gsiwo guhjy
	Data structures and algorithms for analysis of genetics of gene expression with Bioconductor: GGtools 3.x [My Copy] Bioinformatics, Vol. 25, No. 11. (1 June 2009), pp. 1447-1448. by Vincent J. Carey, Adam R. Davis, Michael F. Lawrence, Robert Gentleman, Benjamin A. Raby posted to arrays association expression genotyping qtl snps by djkt on 2009-04-07 19:49:42 as along with 6 people jfr guhjy druvus nuin rdiaz giovanni
	A Model Selection Approach for the Identification of Quantitative Trait Loci in Experimental Crosses, Allowing Epistasis [My Copy] Genetics, Vol. 181, No. 3. (1 March 2009), pp. 1077-1086. by Ani Manichaikul, Jee Y. Moon, Saunak Sen, Brian S. Yandell, Karl W. Broman posted to model_selection qtl by djkt on 2009-03-21 02:15:07 as
	Co-regulated transcriptional networks contribute to natural genetic variation in Drosophila sleep. [My Copy] Nature genetics, Vol. 41, No. 3. (22 March 2009), pp. 371-375. by Susan T. Harbison, Mary Anna A. Carbone, Julien F. Ayroles, Eric A. Stone, Richard F. Lyman, Trudy F. Mackay posted to expression fly popgen qtl by djkt on 2009-02-25 17:55:47 as along with 4 people and 3 groups daveGerrard roys dpollard daforerog BergmanLab RockmanLab NYU Journal Review
	Systems genetics of complex traits in Drosophila melanogaster [My Copy] Nature Genetics, Vol. 41, No. 3. (22 February 2009), pp. 299-307. by Julien F. Ayroles, Mary A. Carbone, Eric A. Stone, et al.Katherine W. Jordan, Richard F. Lyman, Michael M. Magwire, Stephanie M. Rollmann, Laura H. Duncan, Faye Lawrence, Robert R. H. Anholt, Trudy F. C. Mackay posted to association fly qtl by djkt on 2009-02-25 17:52:23 as along with 16 people and 2 groups vingron daveGerrard ongenetics timflutre FuncGen thokall bernadettgaal dpollard semrich roys rdiaz fenghezi emptyhb bertrandservin daforerog provero BergmanLab RockmanLab
	Local Phylogeny Mapping of Quantitative Traits: Higher Accuracy and Better Ranking Than Single-Marker Association in Genomewide Scans [My Copy] Genetics, Vol. 181, No. 2. (1 February 2009), pp. 747-753. by Soren Besenbacher, Thomas Mailund, Mikkel H. Schierup posted to qtl by djkt on 2009-02-20 18:25:18 as along with 1 person xingxu
	Learning a prior on regulatory potential from eQTL data. [My Copy] PLoS genetics, Vol. 5, No. 1. (30 January 2009), e1000358. by Su-In I. Lee, Aimée M. Dudley, David Drubin, et al.Pamela A. Silver, Nevan J. Krogan, Dana Pe'er, Daphne Koller posted to bayesian expression qtl by djkt on 2009-02-05 17:52:15 as along with 7 people ajbattle mingzhi systemsbiology roys sameersoi guhjy lp2
	Quantitative Trait Locus Mapping Can Benefit From Segregation Distortion [My Copy] Genetics, Vol. 180, No. 4. (1 December 2008), pp. 2201-2208. by Shizhong Xu posted to popgen qtl by djkt on 2008-12-16 05:31:11 as
	Accurate Discovery of Expression Quantitative Trait Loci Under Confounding From Spurious and Genuine Regulatory Hotspots [My Copy] Genetics, Vol. 180, No. 4. (1 December 2008), pp. 1909-1925. by Hyun M. Kang, Chun Ye, Eleazar Eskin posted to expression qtl by djkt on 2008-12-16 05:29:55 as along with 3 people lp2 guhjy caseybrown
	Genetical genomics: spotlight on QTL hotspots. [My Copy] PLoS genetics, Vol. 4, No. 10. (24 October 2008), e1000232. by R. Breitling, Y. Li, B. M. Tesson, et al.J. Fu, C. Wu, T. Wiltshire, A. Gerrits, L. V. Bystrykh, G. de Haan, A. I. Su, R. C. Jansen posted to qtl by djkt on 2008-10-24 22:53:16 as along with 6 people guhjy xingxu lp2 natstreet druvus caseybrown
	Network-based model weighting to detect multiple loci influencing complex diseases [My Copy] Human Genetics, Vol. 124, No. 3. (1 October 2008), pp. 225-234. by Wei Pan posted to qtl sysbio by djkt on 2008-10-22 18:34:08 as along with 3 people guhjy saket yyby
	QGene 4.0, an extensible Java QTL-analysis platform [My Copy] Bioinformatics (21 October 2008), btn523. by Roby Joehanes, James C. Nelson posted to qtl by djkt on 2008-10-22 18:03:48 as along with 2 people guhjy paszkows
	High-resolution mapping of expression-QTLs yields insight into human gene regulation. [My Copy] PLoS genetics, Vol. 4, No. 10. (10 October 2008), e1000214. by Jean-Baptiste B. Veyrieras, Sridhar Kudaravalli, Su Yeon Y. Kim, et al.Emmanouil T. Dermitzakis, Yoav Gilad, Matthew Stephens, Jonathan K. Pritchard posted to evolution expression human popgen qtl by djkt on 2008-10-10 18:06:09 as along with 9 people shikin sameersoi athma guhjy bertrandservin xingxu lp2 larbiza caseybrown
	Regulatory Hotspots in the Malaria Parasite Genome Dictate Transcriptional Variation [My Copy] PLoS Biology, Vol. 6, No. 9. (1 September 2008), e238. by Joseph M. Gonzales, Jigar J. Patel, Napawan Ponmee, et al.Lei Jiang, Asako Tan, Steven P. Maher, Stefan Wuchty, Pradipsinh K. Rathod, Michael T. Ferdig posted to evolution expression microbes qtl variation by djkt on 2008-09-30 20:15:02 as along with 3 people arider1 semrich caseybrown
	Considering dependence among genes and markers for false discovery control in eQTL mapping. [My Copy] Bioinformatics (Oxford, England), Vol. 24, No. 18. (15 September 2008), pp. 2015-2022. by L. Chen, T. Tong, H. Zhao posted to expression mtp qtl by djkt on 2008-09-05 19:01:47 as along with 3 people caseybrown guhjy orzenil
	Bayesian QTL Mapping for Multiple Traits [My Copy] Genetics (9 August 2008), genetics.108.088427. by Samprit Banerjee, Brian S. Yandell, Nengjun Yi posted to qtl by djkt on 2008-08-10 16:56:04 as along with 2 people nuin guhjy
	Revealing the architecture of gene regulation: the promise of eQTL studies [My Copy] Trends in Genetics, Vol. 24, No. 8. (August 2008), pp. 408-415. by Y. Gilad, S. Rifkin, J. Pritchard posted to expression qtl by djkt on 2008-07-06 18:45:57 as along with 7 people sameersoi athma emptyhb caseybrown guhjy tmmurali orzenil
	A simple method for calculating the statistical power for detecting a QTL located in a marker interval [My Copy] Heredity, Vol. aop, No. current. by Z. Hu, S. Xu posted to power qtl by djkt on 2008-06-18 19:04:25 as along with 1 person eneda
	Complex genetic interactions underlying expression differences between Drosophila races: analysis of chromosome substitutions. [My Copy] Proceedings of the National Academy of Sciences of the United States of America, Vol. 105, No. 17. (29 April 2008), pp. 6362-6367. by Hurng-Yi Y. Wang, Yonggui Fu, Mary Sara S. McPeek, et al.Xuemei Lu, Sergey Nuzhdin, Anlong Xu, Jian Lu, Mao-Lien L. Wu, Chung-I I. Wu posted to evolution expression fly qtl by djkt on 2008-04-24 17:31:11 as along with 4 people daveGerrard roys maximilianh brant
	Independent effects of cis- and trans-regulatory variation on gene expression in Drosophila melanogaster [My Copy] Genetics (3 February 2008), genetics.107.082032. by Patricia J. Wittkopp, Belinda K. Haerum, Andrew G. Clark posted to expression fly popgen qtl by djkt on 2008-04-02 05:07:15 as along with 5 people and 3 groups brant stajich mimulus_99 dpollard caseybrown EisenLab cis-regulatory-evolution RockmanLab
	Variations in DNA elucidate molecular networks that cause disease. [My Copy] Nature, Vol. 452, No. 7186. (27 March 2008), pp. 429-435. by Yanqing Chen, Jun Zhu, Pek Yee Y. Lum, et al.Xia Yang, Shirly Pinto, Douglas J. MacNeil, Chunsheng Zhang, John Lamb, Stephen Edwards, Solveig K. Sieberts, Amy Leonardson, Lawrence W. Castellini, Susanna Wang, Marie-France F. Champy, Bin Zhang, Valur Emilsson, Sudheer Doss, Anatole Ghazalpour, Steve Horvath, Thomas A. Drake, Aldons J. Lusis, Eric E. Schadt posted to expression qtl rodents by djkt on 2008-03-27 16:31:23 as along with 22 people and 2 groups mnishimu Zephyrus biomcgary daforerog roys druvus nicklynch semrich brianb jbsaltz raiyar lp2 jo_davies shikin caseybrown ptrobajo guhjy echinotrix natstreet sanchezbuelna jfr chrisamiller 4th_floor_JC GeneGo
	Genetics of gene expression and its effect on disease. [My Copy] Nature, Vol. 452, No. 7186. (27 March 2008), pp. 423-428. by Valur Emilsson, Gudmar Thorleifsson, Bin Zhang, et al.Amy S. Leonardson, Florian Zink, Jun Zhu, Sonia Carlson, Agnar Helgason, G. Bragi Walters, Steinunn Gunnarsdottir, Magali Mouy, Valgerdur Steinthorsdottir, Gudrun H. Eiriksdottir, Gyda Bjornsdottir, Inga Reynisdottir, Daniel Gudbjartsson, Anna Helgadottir, Aslaug Jonasdottir, Adalbjorg Jonasdottir, Unnur Styrkarsdottir, Solveig Gretarsdottir, Kristinn P. Magnusson, Hreinn Stefansson, Ragnheidur Fossdal, Kristleifur Kristjansson, Hjortur G. Gislason, Tryggvi Stefansson, Bjorn G. Leifsson, Unnur Thorsteinsdottir, John R. Lamb, Jeffrey R. Gulcher, Marc L. Reitman, Augustine Kong, Eric E. Schadt, Kari Stefansson posted to expression qtl by djkt on 2008-03-27 16:27:44 as along with 20 people and 2 groups nicholso Zephyrus greg daforerog athma zufar druvus brianb lp2 jo_davies shikin caseybrown ptrobajo vplagnol smbe2008 echinotrix natstreet sanchezbuelna guhjy Borelli 4th_floor_JC GeneGo
	From Classical Genetics to Quantitative Genetics to Systems Biology: Modeling Epistasis [My Copy] posted to expression qtl by djkt on 2008-03-14 21:43:43 as along with 1 person braingrind
	Genetic basis of fitness differences in natural populations [My Copy] Nature, Vol. 452, No. 7184. (13 March 2008), pp. 169-175. by Hans Ellegren, Ben C. Sheldon posted to ecology popgen qtl variation by djkt on 2008-03-12 19:45:01 as along with 5 people and 1 group jlin qwermish Zephyrus stevanspringer skumagai R.E.A.D
	affyGG: computational protocols for genetical genomics with Affymetrix arrays. [My Copy] Bioinformatics (Oxford, England), Vol. 24, No. 3. (1 February 2008), pp. 433-434. by R. Alberts, G. Vera, R. C. Jansen posted to arrays qtl by djkt on 2008-01-31 16:43:09 as along with 3 people guhjy giovanni jfr
	A Bayesian Method for Simultaneously Detecting Mendelian and Imprinted Quantitative Trait Loci in Experimental Crosses of Outbred Species [My Copy] Genetics, Vol. 178, No. 1. (1 January 2008), pp. 527-538. by Takeshi Hayashi, Takashi Awata posted to qtl resampling by djkt on 2008-01-18 01:50:21 as
	A unified framework for linkage and association analysis of quantitative traits [My Copy] Proceedings of the National Academy of Sciences, Vol. 104, No. 51. (18 December 2007), pp. 20210-20215. by Josee Dupuis, David O. Siegmund, Benjamin Yakir posted to association qtl by djkt on 2007-12-19 18:26:07 as along with 1 person guhjy
	A genome-wide association study of global gene expression [My Copy] Nature Genetics, Vol. 39, No. 10. (16 September 2007), pp. 1202-1207. by Anna L. Dixon, Liming Liang, Miriam F. Moffatt, et al.Wei Chen, Simon Heath, Kenny C. C. Wong, Jenny Taylor, Edward Burnett, Ivo Gut, Martin Farrall, G. Mark Lathrop, Goncalo R. Abecasis, William O. C. Cookson posted to expression qtl by djkt on 2007-10-11 18:35:26 as along with 12 people daforerog turnersd caseybrown tg150 xingxu gruberjd balicea rdiaz vplagnol jo_davies mimulus_99 ptrobajo
	Detection of eQTL modules mediated by activity levels of transcription factors [My Copy] Bioinformatics, Vol. 23, No. 17. (1 September 2007), pp. 2290-2297. by Wei Sun, Tianwei Yu, Ker-Chau Li posted to expression qtl by djkt on 2007-09-11 16:48:26 as along with 1 person jo_davies
	Linking Metabolic QTL with Network and cis-eQTL Controlling Biosynthetic Pathways [My Copy] posted to metabolomics plants qtl by djkt on 2007-08-07 18:11:53 as
	Regional Admixture Mapping and Structured Association Testing: Conceptual Unification and an Extensible General Linear Model [My Copy] PLoS Genetics, Vol. preprint, No. 2006. (1 July 2006), e137.eor. by David T. Redden, Jasmin Divers, Laura Vaughan, et al.Hemant K. Tiwari, Mark M. Beasley, Jose R. Fernandez, Robert P. Kimberly, Rui Feng, Miguel Padilla, Nianjun Lui, Michael B. Miller, David B. Allison posted to association popgen qtl snps by djkt on 2006-08-08 21:17:43 as along with 1 person oilcan
	Theoretical basis for separation of multiple linked gene effects in mapping quantitative trait loci. [My Copy] Proc Natl Acad Sci U S A, Vol. 90, No. 23. (1 December 1993), pp. 10972-10976. by Z. B. Zeng posted to qtl by djkt on 2006-08-03 23:11:32 as along with 1 person RMGraze
	Estimating the genetic architecture of quantitative traits. [My Copy] Genet Res, Vol. 74, No. 3. (December 1999), pp. 279-289. by Z. B. Zeng, C. H. Kao, C. J. Basten posted to qtl by djkt on 2006-08-03 23:10:14 as along with 1 person RMGraze
	The contributions of normal variation and genetic background to mammalian gene expression [My Copy] Genome Biology, Vol. 7 (2006), R26. by Colin Pritchard, David Coil, Sarah Hawley, Li Hsu, Peter S. Nelson posted to evolution expression popgen qtl by djkt on 2006-08-03 23:08:48 as
	Combined Expression Trait Correlations and Expression Quantitative Trait Locus Mapping. [My Copy] PLoS Genet, Vol. 2, No. 1. (20 January 2006) by Hong Lan, Meng Chen, Jessica B B. Flowers, et al.Brian S S. Yandell, Donnie S S. Stapleton, Christine M M. Mata, Eric Ton-Keen T. Mui, Matthew T T. Flowers, Kathryn L L. Schueler, Kenneth F F. Manly, Robert W W. Williams, Christina Kendziorski, Alan D D. Attie posted to expression popgen qtl by djkt on 2006-08-03 23:05:06 as along with 1 person ccots
	Precision Mapping of Quantitative Trait Loci [My Copy] Genetics, Vol. 136, No. 4. (1 April 1994), pp. 1457-1468. by Z. B. Zeng posted to qtl by djkt on 2006-08-03 23:04:16 as along with 2 people RMGraze juokcho
	The landscape of genetic complexity across 5,700 gene expression traits in yeast [My Copy] Proceedings of the National Academy of Sciences of the United States of America, Vol. 102, No. 5. (1 February 2005), pp. 1572-1577. by Rachel B. Brem, Leonid Kruglyak posted to expression popgen qtl by djkt on 2006-08-03 23:03:00 as along with 5 people ajbattle qfwills lp2 jo_davies caseybrown

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evolution	390
expression	250
popgen	214
selection	128
snps	126
proteins	116
human	108
metagenomics	106
microbes	101
sequencing	97
tf	96
phylogenetics	86
duplication	84
rna	83
primates	83
association	75
review	70
fly	63
msa	59
conservation	59
acceleration	57
chromatin	54
epigenetics	53
sv	51
recombination	49
yeast	47
qtl	46
arrays	44
indel	43
ecology	41
development	39
annotation	37
chromosome	36
alignment	35
motif	34
diversity	34
prediction	32
rodents	31
mtp	31
genome	31
mammals	29
testing	27
repeats	27
disease	24
divergence	23
splicing	22
chip-chip	21
mutation	21
histone	21
demography	21
variation	20
sysbio	19
simulation	18
molclock	18
virus	18
methylation	17
bgc	16
bayesian	15
admixture	15
imprinting	15
microbiome	14
speciation	14
bias	14
estimation	13
gccontent	13
nucleosome	13
clustering	13
genotyping	12
db	12
assembly	11
intron	11
hmm	11
stemcells	10
hiv	10
sex	10
enhancer	10
domestication	10
cpg	10
migration	9
model_selection	9
cancer	9
promoter	9
structure	9
environment	8
haplotype	8
design	8
resampling	7
community	7
dog	7
isochores	7
replication	6
lactation	6
bacteria	6
brain	6
schizophrenia	6
geography	6
ancient_dna	5
computing	5
foxp2	5
kmer	4
worm	4
reconstruction	4
pathogen	4
model	4
power	4
immunity	4
pax6	3
theory	3
gene-transfer	3
viualization	3
bioinfo	3
drift	3
go	3
neanderthal	3
plants	3
synteny	3
vertebrates	3
signalling	2
fish	2
ethics	2
cardiovascular	2
diet	2
network	2
epistasis	2
acertainment	2
species_abundance	2
mixture	2
heterochromatin	2
classification	2
coalescent	2
novel	2
correlation	2
aging	2
ultras	2
repeated_measures	1
svd	1
workflow	1
utr	1
localization	1
vision	1
ctcf	1
phosphorylation	1
microsatellite	1
distribution	1
teeth	1
lineage_sorting	1
teaching	1
dimension_reduction	1
dna	1
ptmass	1
transgenic	1
metabolomics	1
archeology	1
codon	1
olfaction	1
mirna	1
placenta	1
genome_size	1
lactase	1
gene_therapy	1
lrt	1
pca	1
centromeres	1
archaea	1
enzymes	1
roc	1
metabolism	1
birds	1
heart	1
epidemiology	1
reelin	1
forensics	1
eukaryotes	1

djkt's qtl [46 articles] Export

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