djkt's tf [96 articles] Export

Recent papers added to djkt's library classified by the tag tf. You can also see everyone's tf.

	MOODS: fast search for position weight matrix matches in DNA sequences [My Copy] Bioinformatics, Vol. 25, No. 23. (1 December 2009), pp. 3181-3182. by Janne Korhonen, Petri Martinmaki, Cinzia Pizzi, Pasi Rastas, Esko Ukkonen posted to tf motif by djkt on 2009-11-17 17:32:42 as along with 4 people and 2 groups Stew idonaldson ppgardne farhat Bioinformatics - CRUK Journal picks
	Combinatorial binding predicts spatio-temporal cis-regulatory activity [My Copy] Nature, Vol. 462, No. 7269. (05 November 2009), pp. 65-70. by Robert P. Zinzen, Charles Girardot, Julien Gagneur, Martina Braun, Eileen E. M. Furlong posted to tf motif expression enhancer development by djkt on 2009-11-04 21:29:14 as along with 11 people cajunsushi emptyhb toszko roys inesdesantiago fenghezi balabu iskathy megraw TRHvidsten pedrobeltrao
	Functional and Evolutionary Insights into Human Brain Development through Global Transcriptome Analysis [My Copy] Neuron, Vol. 62, No. 4. (28 May 2009), pp. 494-509. by Matthew B. Johnson, Yuka I. Kawasawa, Christopher E. Mason, et al.Željka Krsnik, Giovanni Coppola, Darko Bogdanović, Daniel H. Geschwind, Shrikant M. Mane, Matthew W. State, Nenad Šestan posted to tf human expression development brain by djkt on 2009-11-04 21:10:24 as along with 2 people giovanni fenghezi
	Motif-blind, genome-wide discovery of cis-regulatory modules in Drosophila and mouse. [My Copy] Developmental cell, Vol. 17, No. 4. (20 October 2009), pp. 568-579. by Miriam R. Kantorovitz, Majid Kazemian, Sarah Kinston, et al.Diego Miranda-Saavedra, Qiyun Zhu, Gene E. Robinson, Berthold Göttgens, Marc S. Halfon, Saurabh Sinha posted to tf rodents prediction human fly enhancer development by djkt on 2009-11-04 20:55:41 as along with 1 person maximilianh
	Deeply conserved chordate noncoding sequences preserve genome synteny but do not drive gene duplicate retention [My Copy] Genome Research, Vol. 19, No. 11. (29 November 2009), pp. 2036-2051. by Andrew L. Hufton, Susanne Mathia, Helene Braun, et al.Udo Georgi, Hans Lehrach, Martin Vingron, Albert J. Poustka, Georgia Panopoulou posted to ultras tf synteny evolution duplication development by djkt on 2009-11-02 18:23:14 as along with 3 people and 1 group alhufton brant maximilianh Journal picks
	Distinguishing direct versus indirect transcription factorâDNA interactions [My Copy] Genome Research, Vol. 19, No. 11. (3 November 2009), pp. 2090-2100. by Raluca GordÃ¢n, Alexander J. Hartemink, Martha L. Bulyk posted to tf motif chip-chip by djkt on 2009-11-02 18:17:10 as along with 11 people oannes nklee vingron venancio owhitney tmmurali emptyhb idonaldson maximilianh jbhiatt frohike
	An ensemble model of competitive multi-factor binding of the genome [My Copy] Genome Research, Vol. 19, No. 11. (31 November 2009), pp. 2101-2112. by Todd Wasson, Alexander J. Hartemink posted to tf proteins motif by djkt on 2009-11-02 18:15:45 as along with 6 people megraw vingron xianjun owhitney bpcusack natstreet
	The role of DNA shape in protein\|[ndash]\|DNA recognition [My Copy] Nature, Vol. 461, No. 7268. (29 October 2009), pp. 1248-1253. by Remo Rohs, Sean M. West, Alona Sosinsky, Peng Liu, Richard S. Mann, Barry Honig posted to tf structure by djkt on 2009-10-28 19:34:11 as along with 10 people vingron gjuggler hagechouchin443 renatomilani emptyhb sandersl Fernando_FF operon kintoki TRHvidsten
	Different gene regulation strategies revealed by analysis of binding motifs [My Copy] Trends in Genetics, Vol. 25, No. 10. (06 October 2009), pp. 434-440. by Zeba Wunderlich, Leonid A. Mirny posted to tf motif expression by djkt on 2009-10-21 18:50:54 as along with 2 people and 1 group francemirko behindtherabbit iSEEM
	The Evolutionary Rates of Eukaryotic RNA Polymerases and of Their Transcription Factors Are Affected by the Level of Concerted Evolution of the Genes They Transcribe [My Copy] Mol Biol Evol, Vol. 26, No. 11. (1 November 2009), pp. 2515-2520. by Robert Carter, Guy Drouin posted to tf rna evolution by djkt on 2009-10-12 17:54:09 as along with 3 people dandaman inesdesantiago samgj
	Roles of Trans and Cis Variation in Yeast Intraspecies Evolution of Gene Expression [My Copy] Mol Biol Evol, Vol. 26, No. 11. (1 November 2009), pp. 2533-2538. by Huang-Mo Sung, Tzi-Yuan Wang, Daryi Wang, et al.Yu-Shan Huang, Jen-Pey Wu, Huai-Kuang Tsai, Jengnan Tzeng, Chih-Jen Huang, Yi-Chen Lee, Peggy Yang, Joyce Hsu, Tiffany Chang, Chung-Yi Cho, Li-Chuan Weng, Tso-Ching Lee, Tien-Hsien Chang, Wen-Hsiung Li, Ming-Che Shih posted to yeast tf expression evolution by djkt on 2009-10-12 17:52:05 as
	Prediction of Motifs Based on a Repeated-Measures Model for Integrating Cross-Species Sequence and Expression Data [My Copy] SAGMB, Vol. 8, No. 1., Article 36. by Elizabeth A. Siewert, Katerina J. Kechris posted to tf repeated_measures motif expression by djkt on 2009-09-23 16:54:33 as
	Statistical detection of cooperative transcription factors with similarity adjustment. [My Copy] Bioinformatics (Oxford, England), Vol. 25, No. 16. (15 August 2009), pp. 2103-2109. by Utz J. Pape, Holger Klein, Martin Vingron posted to motif testing tf by djkt on 2009-08-07 21:41:12 as along with 2 people idonaldson TRHvidsten
	Incorporating nucleosomes into thermodynamic models of transcription regulation [My Copy] Genome Research, Vol. 19, No. 8. (August 2009), pp. 1480-1496. by Tali Raveh-Sadka, Michal Levo, Eran Segal posted to expression nucleosome tf by djkt on 2009-08-07 01:23:08 as along with 2 people oannes emptyhb
	Developmental roles of 21 Drosophila transcription factors are determined by quantitative differences in binding to an overlapping set of thousands of genomic regions [My Copy] Genome Biology, Vol. 10, No. 7. (23 July 2009), R80. by Stewart MacArthur, Xiao Y. Li, Jingyi Li, et al.James Brown, Hou C. Chu, Lucy Zeng, Brandi Grondona, Aaron Hechmer, Lisa Simirenko, Soile Keranen, David Knowles, Mark Stapleton, Peter Bickel, Mark Biggin, Michael Eisen posted to chip-chip chromatin fly motif tf by djkt on 2009-07-27 19:01:50 as along with 11 people and 2 groups venancio aalibes fenghezi idonaldson daveGerrard megraw scjparker maximilianh isimpson Stew druvus BergmanLab Bioinformatics - CRUK
	Two Chromatin Remodeling Activities Cooperate during Activation of Hormone Responsive Promoters [My Copy] PLoS Genet, Vol. 5, No. 7. (17 July 2009), e1000567. by Guillermo P. Vicent, Roser Zaurin, A. Silvina Nacht, et al.Ang Li, Jofre Font-Mateu, Francois Le Dily, Michiel Vermeulen, Matthias Mann, Miguel Beato posted to chromatin expression histone tf by djkt on 2009-07-17 16:43:20 as
	Measuring Transcription Factor-Binding Site Turnover: A Maximum Likelihood Approach Using Phylogenies [My Copy] Genome Biol Evol, Vol. 2009, No. 0. (22 June 2009), pp. 85-98. by Wolfgang Otto, Peter F. Stadler, Francesc Lopez-Giraldez, Jeffrey P. Townsend, Vincent J. Lynch, Gunter P. Wagner posted to yeast tf motif evolution by djkt on 2009-06-23 18:01:25 as along with 2 people druvus natstreet
	Probing the Functional Impact of Sequence Variation on p53-DNA Interactions Using a Novel Microsphere Assay for Protein-DNA Binding with Human Cell Extracts [My Copy] PLoS Genet, Vol. 5, No. 5. (8 May 2009), e1000462. by Maher A. Noureddine, Daniel Menendez, Michelle R. Campbell, et al.Omari J. Bandele, Monica M. Horvath, Xuting Wang, Gary S. Pittman, Brian N. Chorley, Michael A. Resnick, Douglas A. Bell posted to expression motif tf by djkt on 2009-05-10 18:02:58 as
	KIRMES: kernel-based identification of regulatory modules in euchromatic sequences. [My Copy] Bioinformatics (Oxford, England), Vol. 25, No. 16. (15 August 2009), pp. 2126-2133. by Sebastian J. Schultheiss, Wolfgang Busch, Jan U. Lohmann, Oliver Kohlbacher, Gunnar Rätsch posted to motif tf by djkt on 2009-05-05 06:50:32 as along with 2 people natstreet operon
	DNA binding site sequence directs glucocorticoid receptor structure and activity. [My Copy] Science (New York, N.Y.), Vol. 324, No. 5925. (17 April 2009), pp. 407-410. by Sebastiaan H. Meijsing, Miles A. Pufall, Alex Y. So, Darren L. Bates, Lin Chen, Keith R. Yamamoto posted to expression motif tf by djkt on 2009-04-17 16:23:05 as along with 7 people and 1 group Annab sebastien_vigneau JustinCrocker fenghezi absterga bpcusack jbhiatt BenosLab
	Predicting the binding preference of transcription factors to individual DNA k-mers [My Copy] Bioinformatics, Vol. 25, No. 8. (15 April 2009), pp. 1012-1018. by Trevis M. Alleyne, Lourdes Pena-Castillo, Gwenael Badis, et al.Shaheynoor Talukder, Michael F. Berger, Andrew R. Gehrke, Anthony A. Philippakis, Martha L. Bulyk, Quaid D. Morris, Timothy R. Hughes posted to motif proteins tf by djkt on 2009-04-08 16:58:27 as along with 6 people and 1 group absterga TRHvidsten bais lptolik nuin maximilianh BenosLab
	High-resolution DNA-binding specificity analysis of yeast transcription factors. [My Copy] Genome research, Vol. 19, No. 4. (21 April 2009), pp. 556-566. by Cong Zhu, Kelsey J. Byers, Rachel Patton P. McCord, et al.Zhenwei Shi, Michael F. Berger, Daniel E. Newburger, Katrina Saulrieta, Zachary Smith, Mita V. Shah, Mathangi Radhakrishnan, Anthony A. Philippakis, Yanhui Hu, Federico De Masi, Marcin Pacek, Andreas Rolfs, Tal Murthy, Joshua Labaer, Martha L. Bulyk posted to motif tf yeast by djkt on 2009-04-01 19:54:10 as along with 9 people matted austin_mcdonald siebert dolchan rpatward xwbcn absterga kristallreiner aalibes
	Intrinsic variability of gene expression encoded in nucleosome positioning sequences. [My Copy] Nature genetics (1 March 2009) by Jung Kyoon K. Choi, Young-Joon J. Kim posted to chromatin expression nucleosome tf by djkt on 2009-03-27 18:29:07 as along with 10 people hagechouchin443 TRHvidsten athma siebert absterga shikin inesdesantiago jjray fenghezi provero
	M are better than one: an ensemble-based motif finder and its application to regulatory element prediction [My Copy] Bioinformatics, Vol. 25, No. 7. (1 April 2009), pp. 868-874. by Chen Yanover, Mona Singh, Elena Zaslavsky posted to motif tf by djkt on 2009-03-25 17:35:09 as along with 5 people pradiptaray TRHvidsten druvus mhamada maximilianh
	Alignment and Prediction of cis-Regulatory Modules Based on a Probabilistic Model of Evolution [My Copy] PLoS Comput Biol, Vol. 5, No. 3. (13 March 2009), e1000299. by Xin He, Xu Ling, Saurabh Sinha posted to alignment evolution motif tf by djkt on 2009-03-21 01:50:33 as along with 9 people roys megraw lusk TRHvidsten kieran101 nuin mhamada maximilianh druvus
	Transcription factor function and promoter architecture govern the evolution of bacterial regulons [My Copy] Proceedings of the National Academy of Sciences (27 February 2009) by Christian J. Perez, Eduardo A. Groisman posted to evolution expression microbes tf by djkt on 2009-03-21 01:37:02 as along with 5 people Sjitprasutwit trfield mstumpf provero jjray
	Highly conserved non-coding elements on either side of SOX9 associated with Pierre Robin sequence [My Copy] Nature Genetics, Vol. 41, No. 3. (22 February 2009), pp. 359-364. by Sabina Benko, Judy A. Fantes, Jeanne Amiel, et al.Dirk-Jan Kleinjan, Sophie Thomas, Jacqueline Ramsay, Negar Jamshidi, Abdelkader Essafi, Simon Heaney, Christopher T. Gordon, David Mcbride, Christelle Golzio, Malcolm Fisher, Paul Perry, Véronique Abadie, Carmen Ayuso, Muriel Holder-Espinasse, Nicky Kilpatrick, Melissa M. Lees, Arnaud Picard, Karen I. Temple, Paul Thomas, Marie-Paule Vazquez, Michel Vekemans, Hugues R. Crollius, Nicholas D. Hastie, Arnold Munnich, Heather C. Etchevers, Anna Pelet, Peter G. Farlie, David R. Fitzpatrick, Stanislas Lyonnet posted to association development enhancer expression indel tf transgenic by djkt on 2009-02-25 17:54:35 as along with 1 person provero
	Cis-regulatory variation is typically polyallelic in Drosophila. [My Copy] Genetics, Vol. 181, No. 2. (8 February 2009), pp. 661-670. by J. D. Gruber, A. D. Long posted to expression fly snps tf variation by djkt on 2009-02-20 18:27:09 as along with 3 people and 1 group JustinCrocker emptyhb cisevol cis-regulatory-evolution
	PASTAA: identifying transcription factors associated with sets of co-regulated genes [My Copy] Bioinformatics (9 December 2008), btn627. by Helge G. Roider, Thomas Manke, Sean O'Keeffe, Martin Vingron, Stefan A. Haas posted to expression motif testing tf by djkt on 2009-02-13 18:30:18 as along with 10 people and 1 group TRHvidsten maximilianh jimineep cassj idonaldson dswan dolchan nuin natstreet druvus Bioinformatics
	ChIP-seq accurately predicts tissue-specific activity of enhancers [My Copy] Nature, Vol. 457, No. 7231. (12 February 2009), pp. 854-858. by Axel Visel, Matthew J. Blow, Zirong Li, et al.Tao Zhang, Jennifer A. Akiyama, Amy Holt, Ingrid Plajzer-Frick, Malak Shoukry, Crystal Wright, Feng Chen, Veena Afzal, Bing Ren, Edward M. Rubin, Len A. Pennacchio posted to enhancer expression tf by djkt on 2009-02-11 20:38:48 as along with 23 people and 2 groups hzoltan tonamswish ewilban1 samanthacooper ashkelon13 isimpson gdb dnewburger jochenG bertelsen oelemento rpatward cajunsushi WanderingAengus absterga provero cassj anphony dpollard caseybrown biomcgary xingxu idonaldson RockmanLab cis-regulatory-evolution
	A SILAC-based DNA protein interaction screen that identifies candidate binding proteins to functional DNA elements [My Copy] Genome Research, Vol. 19, 284. by Gerhard Mittler, Falk Butter, Matthias Mann posted to proteins tf by djkt on 2009-02-10 00:41:00 as
	Methylation and deamination of CpGs generate p53-binding sites on a genomic scale [My Copy] Trends in Genetics, Vol. 25, No. 2. (February 2009), pp. 63-66. by Tomasz Zemojtel, Szymon M. Kielbasa, Peter F. Arndt, Ho-Ryun Chung, Martin Vingron posted to methylation mutation tf by djkt on 2009-02-09 18:23:46 as along with 1 person rschulz
	Coding region structural heterogeneity and turnover of transcription start sites contribute to divergence in expression between duplicate genes. [My Copy] Genome biology, Vol. 10, No. 1. (2009) by Chungoo Park, Kateryna D. Makova posted to duplication evolution expression tf by djkt on 2009-02-03 02:18:08 as along with 6 people and 1 group maximilianh JustinCrocker natstreet madreach bmajoros cisevol cis-regulatory-evolution
	Genetic Interactions Between Transcription Factors Cause Natural Variation in Yeast [My Copy] Science, Vol. 323, No. 5913. (23 January 2009), pp. 498-501. by Justin Gerke, Kim Lorenz, Barak Cohen posted to expression popgen tf yeast by djkt on 2009-01-23 17:05:51 as along with 8 people and 1 group gwcarter dbensasson MarcJungbluth emptyhb cisevol rjlawren lp2 jbhiatt cis-regulatory-evolution
	ARCS-Motif: discovering correlated motifs from unaligned biological sequences. [My Copy] Bioinformatics (Oxford, England), Vol. 25, No. 2. (15 January 2009), pp. 183-189. by Shijie Zhang, Wei Su, Jiong Yang posted to motif tf by djkt on 2009-01-15 16:49:39 as along with 2 people wowalz nuin
	Evolution of Regulatory Sequences in 12 Drosophila Species [My Copy] PLoS Genet, Vol. 5, No. 1. (January 2009), e1000330. by Jaebum Kim, Xin He, Saurabh Sinha posted to evolution fly motif tf by djkt on 2009-01-09 21:39:46 as along with 12 people and 3 groups daveGerrard kevinemamy dpollard caseybrown druvus WanderingAengus JustinCrocker cisevol cajunsushi emptyhb cabbagesofdoom Stew RockmanLab BergmanLab cis-regulatory-evolution
	Analysis of combinatorial cis-regulation in synthetic and genomic promoters [My Copy] Nature, Vol. 457, No. 7226. (23 November 2008), pp. 215-218. by Jason Gertz, Eric D. Siggia, Barak A. Cohen posted to expression motif tf yeast by djkt on 2009-01-07 20:16:59 as along with 17 people and 4 groups Vincent_Rouilly pcarbo emptyhb TRHvidsten rpatward jbhiatt lusk maximilianh roys dpollard druvus sebastien_vigneau pengchy sandersl siebert isimpson xianjun TranscriptionalRegulationWithThermodynamicModels RockmanLab cis-regulatory-evolution microbiology_nijmegen
	Weeder Web: discovery of transcription factor binding sites in a set of sequences from co-regulated genes [My Copy] Nucl. Acids Res., Vol. 32, No. suppl_2. (1 July 2004), pp. W199-203. by Giulio Pavesi, Paolo Mereghetti, Giancarlo Mauri, Graziano Pesole posted to expression motif tf by djkt on 2009-01-07 20:05:41 as along with 8 people farhat Dulce wowalz coldmeadow dquest xiaobeizhao dandaman bryankr
	Connecting microRNA Genes to the Core Transcriptional Regulatory Circuitry of Embryonic Stem Cells [My Copy] Cell, Vol. 134, No. 3. (08 August 2008), pp. 521-533. by Alexander Marson, Stuart S. Levine, Megan F. Cole, et al.Garrett M. Frampton, Tobias Brambrink, Sarah Johnstone, Matthew G. Guenther, Wendy K. Johnston, Marius Wernig, Jamie Newman posted to motif rna stemcells tf by djkt on 2009-01-07 20:04:05 as along with 13 people and 1 group danaiancu gbloeb mtagaya valeriehilgers inesdesantiago jfr heliopais ealloza megraw bootsy pengchy maralena gdb microRNA
	Integration of external signaling pathways with the core transcriptional network in embryonic stem cells. [My Copy] Cell, Vol. 133, No. 6. (13 June 2008), pp. 1106-1117. by X. Chen, H. Xu, P. Yuan, et al.F. Fang, M. Huss, V. B. Vega, E. Wong, Y. L. Orlov, W. Zhang, J. Jiang, Y. H. Loh, H. C. Yeo, Z. X. Yeo, V. Narang, K. R. Govindarajan, B. Leong, A. Shahab, Y. Ruan, G. Bourque, W. K. Sung, N. D. Clarke, C. L. Wei, H. H. Ng posted to motif stemcells tf by djkt on 2009-01-07 20:03:02 as along with 12 people and 2 groups isimpson shikin sebastien_vigneau cassj rschulz FJ fhalbrit jjray inesdesantiago caseybrown kengg gdb Epigenetics CTCF
	Assaying the regulatory potential of mammalian conserved non-coding sequences in human cells [My Copy] Genome Biology, Vol. 9 (02 December 2008), R168. by Catia, John A. Stamatoyannopoulos posted to annotation conservation mammals tf by djkt on 2009-01-07 01:37:48 as along with 7 people and 3 groups xingxu Zephyrus oelemento xianjun samgj maximilianh cisevol Roswell Cancer Crosstalk JLab BergmanLab
	MoD Tools: regulatory motif discovery in nucleotide sequences from co-regulated or homologous genes. [My Copy] Nucleic Acids Res, Vol. 34, No. Web Server issue. (1 July 2006) by G. Pavesi, P. Mereghetti, F. Zambelli, M. Stefani, G. Mauri, G. Pesole posted to motif tf by djkt on 2009-01-06 23:44:47 as along with 2 people wowalz maximilianh
	WeederH: an algorithm for finding conserved regulatory motifs and regions in homologous sequences [My Copy] BMC Bioinformatics, Vol. 8 (07 February 2007), 46. by Giulio Pavesi, Federico Zambelli, Graziano Pesole posted to conservation motif tf by djkt on 2009-01-06 23:43:42 as along with 4 people wowalz dquest GustavoLacerda nuin
	PeakSeq enables systematic scoring of ChIP-seq experiments relative to controls [My Copy] Nature Biotechnology (January 2009) by Rozowsky posted to chromatin sequencing tf by djkt on 2009-01-06 23:10:48 as
	CompMoby: comparative MobyDick for detection of cis-regulatory motifs. [My Copy] BMC bioinformatics, Vol. 9, No. 1. (2008) by Christina Chaivorapol, Collin Melton, Grace Wei, et al.Ru-Fang F. Yeh, Miguel Ramalho-Santos, Robert Blelloch, Hao Li posted to motif tf by djkt on 2009-01-06 23:06:15 as along with 5 people guhjy heliopais xili03 maximilianh druvus
	Adaptive evolution in zinc finger transcription factors. [My Copy] PLoS genetics, Vol. 5, No. 1. (2 January 2009), e1000325. by R. O. Emerson, J. H. Thomas posted to duplication evolution tf by djkt on 2009-01-02 23:22:30 as along with 5 people and 1 group absterga polivares dpollard aalibes JustinCrocker RockmanLab
	Nascent RNA Sequencing Reveals Widespread Pausing and Divergent Initiation at Human Promoters [My Copy] Science, Vol. 322, No. 5909. (19 December 2008), pp. 1845-1848. by Leighton J. Core, Joshua J. Waterfall, John T. Lis posted to expression human rna tf by djkt on 2008-12-19 17:40:53 as along with 13 people and 1 group hagechouchin443 gdb caseybrown sebastien_vigneau bpcusack inesdesantiago skoch3 strands Glires lp2 sandersl diaz0058 jbhiatt Koch_Lab
	Divergent transcription from active promoters. [My Copy] Science (New York, N.Y.), Vol. 322, No. 5909. (19 December 2008), pp. 1849-1851. by Amy C. Seila, J. Mauro Calabrese, Stuart S. Levine, et al.Gene W. Yeo, Peter B. Rahl, Ryan A. Flynn, Richard A. Young, Phillip A. Sharp posted to chromatin expression histone human rna tf by djkt on 2008-12-19 17:39:40 as along with 16 people guhjy gdb fenghezi tonamswish emptyhb caseybrown siebert sebastien_vigneau inesdesantiago jjray strands Glires lp2 sandersl diaz0058 jbhiatt
	Genome-wide relationship between histone H3 lysine 4 mono- and tri-methylation and transcription factor binding [My Copy] Genome Research, Vol. 18, No. 12., 1906. by Robertson posted to chromatin epigenetics histone tf by djkt on 2008-12-05 03:27:42 as
	Transcriptional enhancement by GATA1-occupied DNA segments is strongly associated with evolutionary constraint on the binding site motif [My Copy] Genome Research, Vol. 18, No. 12., 1896. by Cheng posted to conservation evolution motif tf by djkt on 2008-12-05 03:23:21 as

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evolution	390
expression	250
popgen	214
selection	128
snps	126
proteins	116
human	108
metagenomics	106
microbes	101
sequencing	97
tf	96
phylogenetics	86
duplication	84
primates	83
rna	83
association	75
review	70
fly	63
conservation	59
msa	59
acceleration	57
chromatin	54
epigenetics	53
sv	51
recombination	49
yeast	47
qtl	46
arrays	44
indel	43
ecology	41
development	39
annotation	37
chromosome	36
alignment	35
diversity	34
motif	34
prediction	32
genome	31
mtp	31
rodents	31
mammals	29
repeats	27
testing	27
disease	24
divergence	23
splicing	22
chip-chip	21
demography	21
histone	21
mutation	21
variation	20
sysbio	19
molclock	18
simulation	18
virus	18
methylation	17
bgc	16
admixture	15
bayesian	15
imprinting	15
bias	14
microbiome	14
speciation	14
clustering	13
estimation	13
gccontent	13
nucleosome	13
db	12
genotyping	12
assembly	11
hmm	11
intron	11
cpg	10
domestication	10
enhancer	10
hiv	10
sex	10
stemcells	10
cancer	9
migration	9
model_selection	9
promoter	9
structure	9
design	8
environment	8
haplotype	8
community	7
dog	7
isochores	7
resampling	7
bacteria	6
brain	6
geography	6
lactation	6
replication	6
schizophrenia	6
ancient_dna	5
computing	5
foxp2	5
immunity	4
kmer	4
model	4
pathogen	4
power	4
reconstruction	4
worm	4
bioinfo	3
drift	3
gene-transfer	3
go	3
neanderthal	3
pax6	3
plants	3
synteny	3
theory	3
vertebrates	3
viualization	3
acertainment	2
aging	2
cardiovascular	2
classification	2
coalescent	2
correlation	2
diet	2
epistasis	2
ethics	2
fish	2
heterochromatin	2
mixture	2
network	2
novel	2
signalling	2
species_abundance	2
ultras	2
archaea	1
archeology	1
birds	1
centromeres	1
codon	1
ctcf	1
dimension_reduction	1
distribution	1
dna	1
enzymes	1
epidemiology	1
eukaryotes	1
forensics	1
gene_therapy	1
genome_size	1
heart	1
lactase	1
lineage_sorting	1
localization	1
lrt	1
metabolism	1
metabolomics	1
microsatellite	1
mirna	1
olfaction	1
pca	1
phosphorylation	1
placenta	1
ptmass	1
reelin	1
repeated_measures	1
roc	1
svd	1
teaching	1
teeth	1
transgenic	1
utr	1
vision	1
workflow	1

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