dlobo's grn [58 articles] Export

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	Gene regulatory networks for development. [My Copy] Proceedings of the National Academy of Sciences of the United States of America, Vol. 102, No. 14. (5 April 2005), pp. 4936-4942. by Michael Levine, Eric H. Davidson posted to grn development biology by dlobo on 2009-09-03 11:24:36 as along with 5 people and 2 groups daveGerrard Happybene Liusha margaritis jtomasch GEB BergmanLab
	The large-scale organization of metabolic networks [My Copy] Nature, Vol. 407, No. 6804. (05 October 2000), pp. 651-654. by H. Jeong, B. Tombor, R. Albert, Z. N. Oltvai, A. L. Barabasi posted to biology grn by dlobo on 2009-07-03 15:28:29 as along with 30 people and 3 groups jmenche tomhebbron asadrahman sergiun schwartzjmc muraken kentz camster snuppepuppan jpmague mague alexisgallagher bjorns Borelli shivaram lfriedl cmmorel alexg Shirakawa ddahlem gcalda grahamc jrbanga karfunkel Evangelia shung pmendes stefanoallesina shikin dylanwalker GEB dbk-lab kdl
	The ensemble approach to understand genetic regulatory networks [My Copy] Physica A Statistical Mechanics and its Applications, Vol. 340 (September 2004), pp. 733-740. by S. Kauffman posted to grn by dlobo on 2009-04-22 17:06:31 as along with 2 people and 3 groups kinop mattjb GEB ComplexAdaptiveSystems DSTO-CAS
	Gene regulatory networks and the evolution of animal body plans. [My Copy] Science, Vol. 311, No. 5762. (10 February 2006), pp. 796-800. by E. H. Davidson, D. H. Erwin posted to biology development evolution grn by dlobo on 2009-04-22 17:03:28 as along with 20 people and 5 groups mjoach anphony qwermish sWorgan Lauren_Jones eldan bayesian dpollard xico dchughes brixtonmc Liusha margaritis josepe cjeans sujaikumar Garamonfok jtomasch Ema natstreet GEB EisenLab WetBiology G4ID Genetics-of-Gambling
	Dynamics of chronic myeloid leukaemia [My Copy] Nature, Vol. 435, No. 7046., pp. 1267-1270. by Franziska Michor, Timothy P. Hughes, Yoh Iwasa, et al.Susan Branford, Neil P. Shah, Charles L. Sawyers, Martin A. Nowak posted to biology grn by dlobo on 2009-02-04 16:21:57 as along with 4 people and 1 group kentsis tuck sharatjv Koh GEB
	Computational Modelling Of Gene Regulatory Networks -- A Primer [My Copy] (13 August 2008) by Hamid Bolouri posted to book grn by dlobo on 2009-02-04 16:06:02 as along with 1 person and 1 group antonkratz GEB
	Drug target validation and identification of secondary drug target effects using DNA microarrays [My Copy] Nat Med, Vol. 4, No. 11. (November 1998), pp. 1293-1301. by Matthew J. Marton, Joseph L. Derisi, Holly A. Bennett, et al.Vishwanath R. Iyer, Michael R. Meyer, Christopher J. Roberts, Roland Stoughton, Julja Burchard, David Slade, Hongyue Dai, Douglas E. Bassett, Leland H. Hartwell, Patrick O. Brown, Stephen H. Friend posted to biology grn by dlobo on 2009-02-04 16:03:34 as along with 1 group GEB
	Systems biology in drug discovery. [My Copy] Nature biotechnology, Vol. 22, No. 10. (October 2004), pp. 1253-1259. by E. C. Butcher, E. L. Berg, E. J. Kunkel posted to biology grn by dlobo on 2009-02-04 15:59:43 as along with 9 people and 4 groups flbarroso ubcg08l Yanno rhem1224 tny karthikram mingzhi maburkitt kengg GEB TCR_Signaling Neoscientists SysbioMPI-TCells
	Functional classification of drugs by properties of their pairwise interactions [My Copy] Nature Genetics, Vol. 38, No. 4. (19 March 2006), pp. 489-494. by Pamela Yeh, Ariane I. Tschumi, Roy Kishony posted to biology grn by dlobo on 2009-02-04 15:56:38 as along with 4 people and 2 groups lingchong nirfriedman madhadron nickluscombe GEB EBI-regulation
	The engineering of gene regulatory networks. [My Copy] Annu Rev Biomed Eng, Vol. 5 (2003), pp. 179-206. by M. Kaern, W. J. Blake, J. J. Collins posted to grn review by dlobo on 2009-02-04 14:23:18 as along with 4 people and 1 group rklancer biozhang2001 dbikard dylanwalker GEB
	String variable grammar: A logic grammar formalism for the biological language of DNA [My Copy] The Journal of Logic Programming, Vol. 24, No. 1-2. (August 1995), pp. 73-102. by D. Searls posted to grammars grn modeling by dlobo on 2009-02-02 17:48:10 as along with 1 group GEB
	Formal grammars for intermolecular structure [My Copy] In INBS '95: Proceedings of the First International Symposium on Intelligence in Neural and Biological Systems (INBS'95) (1995) by D. B. Searls posted to grammars grn modeling by dlobo on 2009-02-02 17:29:33 as along with 1 group GEB
	Stochastic context-free grammars for tRNA modeling. [My Copy] Nucleic Acids Res, Vol. 22, No. 23. (25 November 1994), pp. 5112-5120. by Y. Sakakibara, M. Brown, R. Hughey, et al.I. S. Mian, K. Sjölander, R. C. Underwood, D. Haussler posted to grammars grn modeling by dlobo on 2009-02-02 17:26:50 as along with 1 person and 1 group gemammr GEB
	RNA modeling using Gibbs sampling and stochastic context free grammars [My Copy] In 2nd Internat. Conf. on Intelligent Systems for Molecular Biology, ISMB-94, Vol. 2 (1994), pp. 138-146. by Leslie Grate, Mark Herbster, Richard Hughey, David Haussler, Saira I. Mian, Harry Noller posted to grammars grn modeling by dlobo on 2009-02-02 17:22:53 as along with 1 person and 1 group gemammr GEB
	Genome structure described by formal languages [My Copy] Nucl. Acids Res., Vol. 12, No. 5. (12 March 1984), pp. 2561-2568. by V. Brendel, H. G. Busse posted to grn modeling by dlobo on 2009-02-02 17:03:26 as along with 2 people and 1 group gemammr quianominorleo GEB
	Identification of genetic networks by strategic gene disruptions and gene overexpressions under a boolean model [My Copy] Theoretical Computer Science, Vol. 298, No. 1. (04 April 2003), pp. 235-251. by T. Akutsu posted to boolnet grn modeling by dlobo on 2009-02-02 16:38:38 as along with 1 group GEB
	Temporal constraints in the logical analysis of regulatory networks [My Copy] Theoretical Computer Science, Vol. 391, No. 3. (14 February 2008), pp. 258-275. by H. Siebert, A. Bockmayr posted to grn modeling by dlobo on 2009-02-02 15:55:59 as along with 1 group GEB
	Modeling genetic networks and their evolution: a complex dynamical systems perspective. [My Copy] Biological chemistry, Vol. 382, No. 9. (September 2001), pp. 1289-1299. by S. Bornholdt posted to evolution grn modeling review by dlobo on 2009-01-28 17:03:20 as along with 1 person and 1 group mjoach GEB
	Generative Network Automata: A Generalized Framework for Modeling Adaptive Network Dynamics Using Graph Rewritings [My Copy] In Adaptive Networks: Theory, Models and Applications (2 Jan 2009) by Hiroki Sayama, Craig Laramee edited by Thilo Gross, Hiroki Sayama posted to grn rewriting by dlobo on 2009-01-20 11:50:25 as along with 1 person and 1 group isotelesis GEB
	The Evolution of Morphology Using Kauffman Nets [My Copy] In Genetic Algorithms in Engineering Systems: Innovations and Applications (12-14 September 1995) by Ian East, Jon Rowe posted to boolnet evolution grn by dlobo on 2009-01-19 10:53:47 as along with 1 group GEB
	On Learning Gene Regulatory Networks Under the Boolean Network Model [My Copy] Mach. Learn., Vol. 52, No. 1-2. (2003), pp. 147-167. by Harri Lähdesmäki, Ilya Shmulevich, Olli Y. Harja posted to boolnet grn by dlobo on 2009-01-19 09:45:02 as along with 1 group GEB
	Modeling the complexity of genetic networks: Understanding multigenic and pleiotropic regulation [My Copy] Complexity, Vol. 1 (1996), pp. 45-63. by R. Somogyi, C. Sniegoski posted to grn by dlobo on 2009-01-19 09:21:11 as along with 1 person and 1 group kentz GEB
	Programming the Drosophila embryo. [My Copy] Journal of theoretical biology, Vol. 188, No. 4. (21 October 1997), pp. 391-445. by J. W. Bodnar posted to grn by dlobo on 2009-01-16 16:58:07 as along with 1 group GEB
	Evolving complex dynamics in electronic models of genetic networks. [My Copy] Chaos, Vol. 14, No. 3. (September 2004), pp. 707-715. by J. Mason, P. S. Linsay, J. J. Collins, L. Glass posted to grn by dlobo on 2009-01-16 15:40:30 as along with 2 people and 1 group eldan dbikard GEB
	Modeling transcriptional control in gene networks—methods, recent results, and future directions [My Copy] Bulletin of Mathematical Biology, Vol. 62, No. 2. (1 March 2000), pp. 247-292. by Paul Smolen, Douglas Baxter, John Byrne posted to grn review by dlobo on 2009-01-16 15:38:12 as along with 3 people and 1 group antonkratz klo wnpx GEB
	Modeling and Simulation of Genetic Regulatory Systems: A Literature Review [My Copy] Journal of Computational Biology, Vol. 9, No. 1. (January 2002), pp. 67-103. by Hidde de Jong posted to grn review by dlobo on 2009-01-16 15:32:11 as along with 28 people and 6 groups fjvico mjoach Borelli qluo antonkratz reyez tlse65 wangbo jago behindtherabbit cswinburne ggallone softsimu eldan tmmurali bayesian balicea Happybene wnpx kengg noano sstoma josepe dagmar jo_davies roys maburkitt phoenixzxl smac GEB Jarman Lab VirtualPlants Plantandetc compneur
	Robustness and evolvability in genetic regulatory networks [My Copy] Journal of Theoretical Biology, Vol. 245, No. 3. (07 April 2007), pp. 433-448. by M. Aldana, E. Balleza, S. Kauffman, O. Resendiz posted to evolution grn by dlobo on 2009-01-16 14:58:28 as along with 1 person and 1 group kinop GEB
	The topology of the regulatory interactions predicts the expression pattern of the segment polarity genes in Drosophila melanogaster [My Copy] Journal of Theoretical Biology, Vol. 223, No. 1. (07 July 2003), pp. 1-18. by R. Albert, H. G. Othmer posted to grn regulation by dlobo on 2009-01-16 14:40:17 as along with 3 people and 1 group Dangerfc winterstream joseph_x_zhou GEB
	The Origins of Order: Self-Organization and Selection in Evolution [My Copy] (10 June 1993) by Stuart A. Kauffman posted to book boolnet evolution grn by dlobo on 2009-01-16 11:11:30 as along with 19 people and 3 groups Kubke kinop adamnellis knuu Adso sjung eldan bayesian balicea pchiusano voiklis daveh echinotrix spirit_of_numenor kray avo mjoach MarkVanHeeswijk santi515 GEB ComplexAdaptiveSystems ColDyn
	Is Morphogenesis an Intrinsically Robust Process? [My Copy] Journal of Theoretical Biology, Vol. 163, No. 1. (1 July 1993), pp. 135-144. by Brian C. Goodwin, Stuart Kauffman, J. D. Murray posted to grn by dlobo on 2009-01-16 10:54:43 as along with 2 people and 1 group josedavid nsamways GEB
	Critical Dynamics in Genetic Regulatory Networks: Examples from Four Kingdoms [My Copy] PLoS ONE, Vol. 3, No. 6. (18 June 2008), e2456. by Enrique Balleza, Elena R. Alvarez-Buylla, Alvaro Chaos, Stuart Kauffman, Ilya Shmulevich, Maximino Aldana posted to grn by dlobo on 2009-01-16 10:54:38 as along with 2 people and 1 group niallhaslam josedavid GEB
	Gene expression dynamics in the macrophage exhibit criticality [My Copy] Proceedings of the National Academy of Sciences of the United States of America (2008) by M. Nykter, N. Price, M. Aldana, et al.S. Ramsey, S. Kauffman, L. Hood, Yli O. Harja, I. Shmulevich posted to grn by dlobo on 2009-01-16 10:54:30 as along with 1 group GEB
	Biased eukaryotic gene regulation rules suggest genome behaviour is near edge of chaos [My Copy] (1997) by E. Harris, B. Sawhill, A. Wuensche, S. Kauffman posted to grn regulation by dlobo on 2009-01-16 10:53:38 as along with 1 group GEB
	Neural Model of the Genetic Network [My Copy] J. Biol. Chem., Vol. 276, No. 39. (21 September 2001), pp. 36168-36173. by Jiri Vohradsky posted to ann grn modeling by dlobo on 2008-12-03 15:56:04 as along with 1 group GEB
	Neutrality and Robustness in Evo-Devo: Emergence of Lateral Inhibition [My Copy] PLoS Comput Biol, Vol. 4, No. 11. (21 November 2008), e1000226. by Andreea Munteanu, Ricard V. Solé posted to evo-devo evolution grn by dlobo on 2008-11-24 09:30:06 as along with 3 people and 3 groups joseph_x_zhou bayesian bpcusack Evolutionary Dynamics Math Bio bioNetwork_sysBio GEB
	Robustness can evolve gradually in complex regulatory gene networks with varying topology [My Copy] PLoS Computational Biology, Vol. 3, No. 2. (2007) by S. Ciliberti, O. Martin, A. Wagner posted to grn by dlobo on 2008-11-21 10:18:55 as along with 1 group GEB
	Innovation and robustness in complex regulatory gene networks [My Copy] Proceedings of the National Academy of Sciences, Vol. 104, No. 34. (21 August 2007), pp. 13591-13596. by S. Ciliberti, O. C. Martin, A. Wagner posted to grn regulation by dlobo on 2008-11-21 10:16:35 as along with 12 people and 3 groups abhishek_tiwari mjoach ocs benjaminsb balicea dakelley cmzmasek jmenche dpollard sebastien_vigneau zwang cisevol GEB EisenLab cis-regulatory-evolution
	The transition from differential equations to Boolean networks: A case study in simplifying a regulatory network model [My Copy] Journal of Theoretical Biology, Vol. 255, No. 3. (07 December 2008), pp. 269-277. by M. Davidich, S. Bornholdt posted to grn regulation by dlobo on 2008-11-14 16:46:05 as along with 2 people and 1 group Dangerfc schwartzjmc GEB
	On Learning Gene Regulatory Networks Under the Boolean Network Model [My Copy] Machine Learning, Vol. 52, No. 1. (1 July 2003), pp. 147-167. by Harri Lähdesmäki, Ilya Shmulevich, Olli Yli-Harja posted to grn modeling by dlobo on 2008-11-11 17:19:01 as along with 1 group GEB
	Do motifs reflect evolved function?—No convergent evolution of genetic regulatory network subgraph topologies☆ [My Copy] Biosystems (20 June 2008) by J. Knabe, C. Nehaniv, M. Schilstra posted to evolution grn by dlobo on 2008-11-03 15:50:45 as along with 2 people and 1 group mjoach jknabe GEB
	Mathematical modelling in the post-genome era: understanding genome expression and regulation—a system theoretic approach [My Copy] Biosystems, Vol. 65, No. 1. (February 2002), pp. 1-18. by O. Wolkenhauer posted to grn modeling by dlobo on 2008-10-29 17:36:52 as along with 1 group GEB
	An End to Endless Forms: Epistasis, Phenotype Distribution Bias, and Nonuniform Evolution [My Copy] PLoS Comput Biol, Vol. 4, No. 10. (24 October 2008), e1000202. by Elhanan Borenstein, David C. Krakauer posted to complexity grn by dlobo on 2008-10-27 12:12:59 as along with 12 people and 2 groups qwermish bpcusack joseph_x_zhou bayesian biomcgary davfre jago Zephyrus mjoach grahamc alhufton djkt R.E.A.D GEB
	Modeling the fitness of plant morphologies across three levels of complexity [My Copy] Biosystems, Vol. 94, No. 1-2. (October 2008), pp. 182-190. by J. Watson, J. Hanan, J. Wiles posted to development grn indirect by dlobo on 2008-10-20 17:09:50 as along with 1 group GEB
	Network motifs: theory and experimental approaches [My Copy] Nature Reviews Genetics In Nat Rev Genet, Vol. 8, No. 6. (01 June 2007), pp. 450-461. by Uri Alon posted to grn regulation by dlobo on 2008-09-22 08:55:32 as along with 35 people and 4 groups rst phoenixzxl yoshiness Katieleonard nurban mjoach vtraag mlee1 myzhang hkuhn mtagaya cambray dswan renatomilani heliopais snow_dragon druvus pengchy cswinburne kentz icases aalibes cmmorel jtaylor dbikard margaritis shigepong zwang grinfish Pascalichouchou xingxu karfunkel vietanh0 haarcuba Borelli GEB TNT Centre de Recherches Interdisciplinaires SynBioSys
	Transcriptional Autoregulatory Loops Are Highly Conserved in Vertebrate Evolution [My Copy] PLoS ONE, Vol. 3, No. 9. (2008), e3210. by Szymon M. Kiełbasa, Martin Vingron posted to evolution grn regulation by dlobo on 2008-09-22 08:53:34 as along with 1 group GEB
	Biologically Inspired Evolutionary Development [My Copy] Evolvable Systems: From Biology to Hardware (2003), pp. 99-106. by Sanjeev Kumar, Peter J. Bentley posted to development differentiation grn indirect by dlobo on 2008-09-15 17:20:15 as along with 1 person and 1 group wangbo GEB
	Evolving Embodied Genetic Regulatory Network-Driven Control Systems [My Copy] Advances in Artificial Life In Seventh European Conference on Artificial Life (2003), pp. 266-277. by Tom Quick, Chrystopher L. Nehaniv, Kerstin Dautenhahn, Graham Roberts posted to grn indirect by dlobo on 2008-09-15 17:01:10 as along with 1 group GEB
	Evolving Biological Clocks using Genetic Regulatory Networks [My Copy] In Artificial Life X : Proceedings of the Tenth International Conference on the Simulation and Synthesis of Living Systems (1 August 2006), pp. 15-21. by Johannes F. Knabe, Chrystpoher L. Nehaniv, Maria J. Schilstra, Tom Quick edited by Luis M. Rocha, Larry S. Yaeger, Mark A. Bedau, Dario Floreano, Robert L. Goldstone, Alessandro Vespignani posted to grn indirect regulation by dlobo on 2008-09-15 16:49:07 as along with 3 people and 1 group eldan jknabe darkmaul GEB
	Metabolic stability and epigenesis in randomly constructed genetic nets [My Copy] Journal of Theoretical Biology, Vol. 22, No. 3. (1969), pp. 437-467. by S. Kauffman posted to boolnet grn by dlobo on 2008-09-15 15:57:04 as along with 1 group GEB
	Evolutionary Robustness of Differentiation in Genetic Regulatory Networks [My Copy] In 7th German Workshop on Artificial Life 2006 (GWAL-7) (2006), pp. 75-84. by Johannes F. Knabe, Chrystopher L. Nehaniv, Maria J. Schilstra posted to differentiation grn by dlobo on 2008-09-15 11:24:47 as along with 1 group GEB

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indirect	181
evolution	102
grn	58
biology	55
boolnet	40
development	37
graph	37
machinemetabolism	36
genetics	23
regulation	21
grammars	21
modeling	21
agrn	20
l-systems	18
direct	18
review	18
alife	15
robotics	15
l-system	13
complexity	13
ann	12
paidi	9
reconfiguration	9
hpc	8
book	8
neuroevolution	7
evoprog	6
rewriting	6
speciation	5
differentiation	5
evo-devo	5
open-ended	5
tensegrity	4
languages	4
evolvability	3
behavior	3
ca	2
robustness	2
pso	2
ai	2
sex	1
geneticprogramming	1
genetic-prog	1
automata	1
for:fjvico	1
symmetry	1
metascience	1
theory	1
distcomp	1
image_synthesis	1
books	1
gene	1
bioe	1
life	1
ga	1
epigenetic	1

dlobo's grn [58 articles] Export

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