The Yeast Gene Order Browser: Combining curated homology and syntenic context reveals gene fate in polyploid species

by: Kevin P Byrne, Kenneth H Wolfe

Genome Res., Vol. 15, No. 10. (1 October 2005), pp. 1456-1461.

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Abstract

We developed the Yeast Gene Order Browser (YGOB; http://wolfe.gen.tcd.ie/ygob) to facilitate visual comparisons and computational analysis of synteny relationships in yeasts. The data presented in YGOB, currently covering seven species, are based on sets of homologous genes that have been intensively manually curated based on both sequence similarity and genomic context (synteny). We reconciled different laboratories' lists of paralogous Saccharomyces cerevisiae gene pairs formed by genome duplication (ohnologs), and present near-exhaustive lists of the ohnolog pairs retained in S. cerevisiae (551, including 22 previously unidentified), Saccharomyces castellii (599), and Candida glabrata (404). 10.1101/gr.3672305

@article{citeulike:2484511, abstract = {We developed the Yeast Gene Order Browser (YGOB; http://wolfe.gen.tcd.ie/ygob) to facilitate visual comparisons and computational analysis of synteny relationships in yeasts. The data presented in YGOB, currently covering seven species, are based on sets of homologous genes that have been intensively manually curated based on both sequence similarity and genomic context (synteny). We reconciled different laboratories' lists of paralogous Saccharomyces cerevisiae gene pairs formed by genome duplication (ohnologs), and present near-exhaustive lists of the ohnolog pairs retained in S. cerevisiae (551, including 22 previously unidentified), Saccharomyces castellii (599), and Candida glabrata (404). 10.1101/gr.3672305}, author = {Byrne, Kevin P. and Wolfe, Kenneth H. }, citeulike-article-id = {2484511}, doi = {10.1101/gr.3672305}, journal = {Genome Res.}, keywords = {sgrp}, month = {October}, number = {10}, pages = {1456--1461}, posted-at = {2008-03-07 13:46:22}, priority = {2}, title = {The Yeast Gene Order Browser: Combining curated homology and syntenic context reveals gene fate in polyploid species}, url = {http://dx.doi.org/10.1101/gr.3672305}, volume = {15}, year = {2005} }

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TY - JOUR ID - citeulike:2484511 L3 - citeulike-article-id:2484511 TI - The Yeast Gene Order Browser: Combining curated homology and syntenic context reveals gene fate in polyploid species JF - Genome Res. VL - 15 IS - 10 SP - 1456 EP - 1461 N2 - We developed the Yeast Gene Order Browser (YGOB; http://wolfe.gen.tcd.ie/ygob) to facilitate visual comparisons and computational analysis of synteny relationships in yeasts. The data presented in YGOB, currently covering seven species, are based on sets of homologous genes that have been intensively manually curated based on both sequence similarity and genomic context (synteny). We reconciled different laboratories' lists of paralogous Saccharomyces cerevisiae gene pairs formed by genome duplication (ohnologs), and present near-exhaustive lists of the ohnolog pairs retained in S. cerevisiae (551, including 22 previously unidentified), Saccharomyces castellii (599), and Candida glabrata (404). 10.1101/gr.3672305 KW - sgrp AU - Byrne, Kevin AU - Wolfe, Kenneth PY - 2005/10/01/ UR - http://dx.doi.org/10.1101/gr.3672305 ER -

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