dmitry_s_yershov's library 76 articles Export

	A Simple Algorithm for Complete Motion Planning of Translating Polyhedral Robots [My Copy] The International Journal of Robotics Research, Vol. 24, No. 11. (1 November 2005), pp. 983-995. by Gokul Varadhan, Shankar Krishnan, Sriram, Dinesh Manocha posted to roadmap motion_planning by dmitry_s_yershov on 2009-11-04 17:25:33 as
	Variable Resolution Discretization in Optimal Control [My Copy] Machine Learning, Vol. 49, No. 2. (1 November 2002), pp. 291-323. by Rémi Munos, Andrew Moore posted to no-tag by dmitry_s_yershov on 2009-10-02 18:27:42 as along with 1 person dayadvham
	Efficient algorithms for globally optimal trajectories [My Copy] Automatic Control, IEEE Transactions on In Automatic Control, IEEE Transactions on, Vol. 40, No. 9. (06 August 2002), pp. 1528-1538. by J. N. Tsitsiklis posted to variation system_of_equations jacobi_equation iterative_methods by dmitry_s_yershov on 2009-10-02 17:53:56 as along with 1 person tyler
	A smooth permittivity function for Poisson-Boltzmann solvation methods [My Copy] Journal of Computational Chemistry, Vol. 22, No. 6. (2001), pp. 608-640. by J. Andrew Grant, Barry T. Pickup, Anthony Nicholls posted to no-tag by dmitry_s_yershov on 2009-07-30 19:22:11 as along with 4 people nickolay stephenbond cen4ik onufriev
	Multilevel Summation for the Fast Evaluation of Forces for the Simulation of Biomolecules [My Copy] (May 2006) by David J. Hardy posted to electrostatics multigrid multilevel_sumation_method poisson poisson-boltzmann by dmitry_s_yershov on 2009-07-30 16:24:18 as
	Solvation and Polarization of the N-Methyl Amine Molecule in Aqueous Solution: A Combined Study of Quantum Mechanics and Integral Equation Theory in Three Dimensions [My Copy] The Journal of Physical Chemistry B, Vol. 107, No. 48. (1 December 2003), pp. 13463-13470. by Qishi Du, Dongqing Wei posted to no-tag by dmitry_s_yershov on 2009-06-22 19:00:24 as
	Numerical solution of the hypernetted chain equation for a solute of arbitrary geometry in three dimensions [My Copy] The Journal of Chemical Physics, Vol. 103, No. 1. (1995), pp. 360-364. by Dmitrii Beglov, Benoît Roux posted to no-tag by dmitry_s_yershov on 2009-06-16 23:08:01 as
	Density functional theory of nonuniform polyatomic systems. I. General formulation [My Copy] The Journal of Chemical Physics, Vol. 85, No. 10. (1986), pp. 5971-5976. by David Chandler, John D. Mccoy, Sherwin J. Singer posted to no-tag by dmitry_s_yershov on 2009-06-11 20:48:43 as
	Pair correlations in an NaCl-SPC water model -- Simulations versus extended RISM computations [My Copy] Molecular Physics: An International Journal at the Interface Between Chemistry and Physics, Vol. 77, No. 4. (1992), pp. 769-785. by Gerhard Hummer, Dikeos M. Soumpasis, Martin Neumann posted to no-tag by dmitry_s_yershov on 2009-06-05 19:34:42 as
	Hydration of an &agr;-Helical peptide: comparison of theory and molecular dynamics simulation [My Copy] Proteins: Structure, Function, and Genetics, Vol. 27, No. 4. (1997), pp. 471-480. by Angel E. García, Gerhard Hummer, Dikeos M. Soumpasis posted to no-tag by dmitry_s_yershov on 2009-06-05 19:31:18 as
	Computation of the water density distribution at the ice-water interface using the potentials-of-mean-force expansion [My Copy] Physical Review E, Vol. 49, No. 1. (Jan 1994), pp. 591-596. by Gerhard Hummer, Dikeos M. Soumpasis posted to no-tag by dmitry_s_yershov on 2009-06-05 19:28:45 as
	Apparent Local Dielectric Response around Ions in Water: A Method for Its Determination and Its Applications [My Copy] The Journal of Physical Chemistry, Vol. 99, No. 14. (1 April 1995), pp. 5187-5195. by Jin-Kee Hyun, Satheesan C. Babu, Toshiko Ichiye posted to no-tag by dmitry_s_yershov on 2009-06-05 19:26:15 as
	An integral equation theory for the structure of water around globular solutes [My Copy] Chemical Physics Letters, Vol. 231, No. 4-6. (30 December 1994), pp. 380-386. by Y. Liu posted to no-tag by dmitry_s_yershov on 2009-06-05 19:19:28 as
	A three-dimensional reduction of the Ornstein--Zernicke equation for molecular liquids [My Copy] The Journal of Chemical Physics, Vol. 107, No. 16. (1997), pp. 6400-6414. by Christian M. Cortis, Peter J. Rossky, Richard A. Friesner posted to no-tag by dmitry_s_yershov on 2009-06-05 19:17:10 as
	Solvation Free Energy of Polar and Nonpolar Molecules in Water: An Extended Interaction Site Integral Equation Theory in Three Dimensions [My Copy] J. Phys. Chem. B, Vol. 104, No. 4. (3 February 2000), pp. 796-805. by Q. Du, D. Beglov, B. Roux posted to no-tag by dmitry_s_yershov on 2009-06-05 19:13:03 as along with 1 person and 1 group sobolevnrm baker-group
	Solvation and Polarization of the N-Methyl Amine Molecule in Aqueous Solution: A Combined Study of Quantum Mechanics and Integral Equation Theory in Three Dimensions [My Copy] The Journal of Physical Chemistry B, Vol. 111, No. 48. (1 December 2007), pp. 13658-13658. by Qishi Du, Dmitri Beglov, Dongqing Wei, Benoit Roux posted to no-tag by dmitry_s_yershov on 2009-06-05 19:12:00 as
	Conformations of the glycine dipeptide [My Copy] Biopolymers, Vol. 26, No. 11. (1987), pp. 1817-1831. by Wan F. Lau, Montgomery B. Pettitt posted to no-tag by dmitry_s_yershov on 2009-06-05 19:02:08 as
	The potential of mean force surface for the alanine dipeptide in aqueous solution: a theoretical approach [My Copy] Chemical Physics Letters, Vol. 121, No. 3. (8 November 1985), pp. 194-201. by Montgomery posted to no-tag by dmitry_s_yershov on 2009-06-05 18:58:17 as
	The structure of water surrounding a peptide: a theoretical approach [My Copy] Chemical Physics Letters, Vol. 136, No. 5. (15 May 1987), pp. 383-386. by B. Montgomerypettitt, M. Karplus posted to no-tag by dmitry_s_yershov on 2009-06-05 18:57:25 as
	Hydrophobicity at Small and Large Length Scales [My Copy] The Journal of Physical Chemistry B, Vol. 103, No. 22. (1 June 1999), pp. 4570-4577. by Ka Lum, David Chandler, John D. Weeks posted to no-tag by dmitry_s_yershov on 2009-06-05 16:49:03 as along with 3 people softsimu mijam sas
	Ion sizes and finite-size corrections for ionic-solvation free energies [My Copy] The Journal of Chemical Physics, Vol. 107, No. 21. (1997), pp. 9275-9277. by Gerhard Hummer, Lawrence R. Pratt, Angel E. Garc\ía posted to no-tag by dmitry_s_yershov on 2009-06-03 20:51:21 as
	Hydrophobic hydration: Inhomogeneous water structure near nonpolar molecular solutes [My Copy] Physical Review E, Vol. 53, No. 5. (May 1996), pp. R4310-R4313. by Shekhar Garde, Gerhard Hummer, Angel E. García, Lawrence R. Pratt, Michael E. Paulaitis posted to no-tag by dmitry_s_yershov on 2009-06-03 20:50:11 as
	An information theory model of hydrophobic interactions [My Copy] Proceedings of the National Academy of Sciences of the United States of America, Vol. 93, No. 17. (20 August 1996), pp. 8951-8955. by G. Hummer, S. Garde, A. E. GarcÃa, A. Pohorille, L. R. Pratt posted to no-tag by dmitry_s_yershov on 2009-06-03 20:47:28 as along with 2 people softsimu mijam
	The interpretation of protein structures: estimation of static accessibility. [My Copy] J Mol Biol, Vol. 55, No. 3. (14 February 1971), pp. 379-400. by B. Lee, F. M. Richards posted to no-tag by dmitry_s_yershov on 2009-06-03 20:28:04 as along with 3 people sebk ashaytan bicko
	Free energy simulations: The meaning of the individual contributions from a component analysis [My Copy] Proteins: Structure, Function, and Genetics, Vol. 20, No. 1. (1994), pp. 25-33. by Stefan Boresch, Georgios Archontis, Martin Karplus posted to no-tag by dmitry_s_yershov on 2009-06-03 20:17:51 as
	Some exact results and the application of the mean spherical approximation to charged hard spheres near a charged hard wall [My Copy] The Journal of Chemical Physics, Vol. 69, No. 12. (1978), pp. 5441-5449. by Douglas Henderson, Lesser Blum posted to no-tag by dmitry_s_yershov on 2009-06-02 17:46:20 as
	An exact formula for the contact value of the density profile of a system of charged hard spheres near a charged wall [My Copy] Journal of Electroanalytical Chemistry, Vol. 102, No. 3. (10 October 1979), pp. 315-319. by D. Henderson, L. Blum, J. Lebowitz posted to no-tag by dmitry_s_yershov on 2009-06-02 00:58:18 as
	Application of the generalized mean spherical approximation to the electric double layer [My Copy] Surface Science, Vol. 101, No. 1-3. (December 1980), pp. 189-193. by D. Henderson, L. Blum posted to no-tag by dmitry_s_yershov on 2009-06-02 00:49:47 as
	Calculating electrostatic forces from grid-calculated potentials [My Copy] Journal of Computational Chemistry, Vol. 11, No. 3. (1990), pp. 401-409. by M. E. Davis, J. A. Mccammon posted to no-tag by dmitry_s_yershov on 2009-06-01 23:19:55 as
	Computation of electrostatic forces on solvated molecules using the Poisson-Boltzmann equation [My Copy] The Journal of Physical Chemistry, Vol. 97, No. 14. (1 April 1993), pp. 3591-3600. by Michael K. Gilson, Malcolm E. Davis, Brock A. Luty, Andrew J. Mccammon posted to no-tag by dmitry_s_yershov on 2009-06-01 22:14:04 as
	Role of Long-Range Repulsive Interactions in Two-Dimensional Colloidal Aggregation: Experiments and Simulations [My Copy] Langmuir, Vol. 18, No. 24. (1 November 2002), pp. 9183-9191. by A. Moncho-Jorda, F. Martinez-Lopez, A. E. Gonzalez, R. Hidalgo-Alvarez posted to no-tag by dmitry_s_yershov on 2009-06-01 18:35:18 as
	Accurate Calculation of Hydration Free Energies Using Macroscopic Solvent Models [My Copy] The Journal of Physical Chemistry, Vol. 98, No. 7. (1 February 1994), pp. 1978-1988. by Doree Sitkoff, Kim A. Sharp, Barry Honig posted to delphi electrostatics finite_difference nonpolar_energy poisson solvation_energy surface_tension by dmitry_s_yershov on 2009-05-27 19:59:20 as along with 4 people melo_mcr onufriev flbarroso dfgreen
	Fast algorithms for Helmholtz Green's functions [My Copy] Proceedings of the Royal Society A: Mathematical, Physical and Engineering Sciences, Vol. 464, No. 2100. (December 2008), pp. 3301-3326. by Gregory Beylkin, Christopher Kurcz, Lucas Monzón posted to no-tag by dmitry_s_yershov on 2009-05-07 00:53:17 as
	Multilevel Evaluation of Integral Transforms with Asymptotically Smooth Kernels [My Copy] SIAM Journal on Scientific Computing, Vol. 19, No. 2. (1998), pp. 468-492. by A. Brandt, C. H. Venner posted to no-tag by dmitry_s_yershov on 2009-04-26 21:37:03 as
	Multilevel matrix multiplication and fast solution of integral equations☆ [My Copy] Journal of Computational Physics, Vol. 90, No. 2. (October 1990), pp. 348-370. by A. Brandt, A. Lubrecht posted to no-tag by dmitry_s_yershov on 2009-04-26 21:34:30 as
	Correcting mesh-based force calculations to conserve both energy and momentum in molecular dynamics simulations [My Copy] Journal of Computational Physics, Vol. 225, No. 1. (01 July 2007), pp. 1-5. by R. Skeel, D. Hardy, J. Phillips posted to no-tag by dmitry_s_yershov on 2009-04-14 19:21:18 as along with 1 person RamuAnandakrishnan
	The fast multipole boundary element method for molecular electrostatics: An optimal approach for large systems [My Copy] Journal of Computational Chemistry, Vol. 16, No. 7. (1995), pp. 898-913. by Ranganathan Bharadwaj, Andreas Windemuth, S. Sridharan, Barry Honig, Anthony Nicholls posted to boundary_elements electrostatics fast_multipole_method poisson solvation_energy by dmitry_s_yershov on 2009-04-09 20:05:27 as
	Theory of Solutions of Molecules Containing Widely Separated Charges with Special Application to Zwitterions [My Copy] The Journal of Chemical Physics, Vol. 2, No. 7. (1934), pp. 351-361. by John G. Kirkwood posted to boundary_integral electrostatics helmholtz mathematical_physics spherical_harmonics by dmitry_s_yershov on 2009-04-02 22:26:40 as along with 2 people stephenbond mikaellund
	Adaptive multilevel finite element solution of the Poisson-Boltzmann equation I. Algorithms and examples [My Copy] Journal of Computational Chemistry, Vol. 21, No. 15. (2000), pp. 1319-1342. by M. Holst, N. Baker, F. Wang posted to no-tag by dmitry_s_yershov on 2009-03-26 19:08:00 as along with 1 person stephenbond
	Numerical solution of the Poisson-Boltzmann equation using tetrahedral finite-element meshes [My Copy] Journal of Computational Chemistry, Vol. 18, No. 13. (1997), pp. 1591-1608. by Christian M. Cortis, Richard A. Friesner posted to no-tag by dmitry_s_yershov on 2009-03-26 19:05:31 as
	Solving the finite difference linearized Poisson-Boltzmann equation: A comparison of relaxation and conjugate gradient methods [My Copy] Journal of Computational Chemistry, Vol. 10, No. 3. (1989), pp. 386-391. by M. E. Davis, J. A. Mccammon posted to no-tag by dmitry_s_yershov on 2009-03-26 19:00:39 as along with 1 person dfgreen
	The electric potential of a macromolecule in a solvent: A fundamental approach [My Copy] Journal of Computational Physics, Vol. 97, No. 1. (November 1991), pp. 144-171. by A. Juffer, E. Botta, B. Vankeulen, A. Vanderploeg, H. Berendsen posted to no-tag by dmitry_s_yershov on 2009-03-26 18:58:42 as
	A boundary element method for molecular electrostatics with electrolyte effects [My Copy] Journal of Computational Chemistry, Vol. 11, No. 9. (1990), pp. 1080-1086. by Byung J. Yoon, A. M. Lenhoff posted to electrostatics poisson solvation_energy boundary_elements poisson-boltzmann by dmitry_s_yershov on 2009-03-26 18:12:01 as along with 1 person stephenbond
	Calculating total electrostatic energies with the nonlinear Poisson-Boltzmann equation [My Copy] The Journal of Physical Chemistry, Vol. 94, No. 19. (1990), pp. 7684-7692. by Kim A. Sharp, Barry Honig posted to no-tag by dmitry_s_yershov on 2009-03-26 17:58:12 as along with 2 people Elena_Zubova dfgreen
	Calculating the electrostatic potential of molecules in solution: Method and error assessment [My Copy] Journal of Computational Chemistry, Vol. 9, No. 4. (1988), pp. 327-335. by Michael K. Gilson, Kim A. Sharp, Barry H. Honig posted to delphi electrostatics grid_refinement solvation_energy finite_difference by dmitry_s_yershov on 2009-03-26 17:51:00 as along with 2 people dfgreen RamuAnandakrishnan
	Continuum Electrostatic Energies of Macromolecules in Aqueous Solutions [My Copy] The Journal of Physical Chemistry A, Vol. 101, No. 43. (1 October 1997), pp. 8098-8106. by M. Scarsi, J. Apostolakis, A. Caflisch posted to solvation_energy generalized_born by dmitry_s_yershov on 2009-03-26 16:17:51 as along with 3 people flbarroso onufriev RamuAnandakrishnan
	Adaptive multilevel finite element solution of the Poisson-Boltzmann equation II. Refinement at solvent-accessible surfaces in biomolecular systems [My Copy] Journal of Computational Chemistry, Vol. 21, No. 15. (2000), pp. 1343-1352. by N. Baker, M. Holst, F. Wang posted to finite_element poisson-boltzmann by dmitry_s_yershov on 2009-03-26 16:12:07 as along with 1 person stephenbond
	Theoretical Numerical Analysis: A Functional Analysis Framework (Texts in Applied Mathematics) [My Copy] (21 June 2007) by Kendall Atkinson, Weimin Han posted to functional_analysis numerical_analysis by dmitry_s_yershov on 2009-03-25 18:48:38 as along with 1 person nmdang
	Classical Electrodynamics Third Edition [My Copy] (10 August 1998) by John D. Jackson posted to electrodynamics electrostatics mathematical_physics by dmitry_s_yershov on 2009-03-25 18:42:54 as along with 7 people swuestner hdobbins convulted andreasdeschka chrisk NitinCR dhbradshaw
	Comparison of implicit solvent models for the simulation of protein-surface interactions [My Copy] Journal of Computational Chemistry, Vol. 27, No. 16. (2006), pp. 1908-1922. by Yu Sun, Robert A. Latour posted to no-tag by dmitry_s_yershov on 2009-03-25 18:33:39 as along with 2 people stephenbond hlwoodcock

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electrostatics	9
solvation_energy	6
poisson	5
boundary_elements	4
poisson-boltzmann	4
boundary_integral	2
delphi	2
finite_difference	2
mathematical_physics	2
multigrid	2
multilevel_sumation_method	2
electrodynamics	1
fast_multipole_method	1
finite_element	1
functional_analysis	1
generalized_born	1
grid_refinement	1
helmholtz	1
iterative_methods	1
jacobi_equation	1
motion_planning	1
nonpolar_energy	1
numerical_analysis	1
roadmap	1
spherical_harmonics	1
surface_tension	1
system_of_equations	1
thermodynamic_integration	1
variation	1

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