doktornoe's library 436 articles Export

	Time-resolved X-ray crystallographic study of the conformational change in Ha-Ras p21 protein on GTP hydrolysis [My Copy] Nature, Vol. 345, No. 6273. (24 May 1990), pp. 309-315. by Ilme Schlichting, Steven C. Almo, Gert Rapp, et al.Keith Wilson, Kyriakos Petratos, Arno Lentfer, Alfred Wittinghofer, Wolfgang Kabsch, Emil F. Pai, Gregory A. Petsko, Roger S. Goody posted to no-tag by doktornoe on 2009-11-27 15:56:38 as along with 1 person and 1 group tomatoman Oxford Hooker Group
	Decoding the pattern of photon colors in single-molecule FRET. [My Copy] The journal of physical chemistry. B, Vol. 113, No. 31. (6 August 2009), pp. 10965-10973. by Irina V. Gopich, Attila Szabo posted to no-tag by doktornoe on 2009-10-29 11:10:54 as along with 3 people and 1 group quanwang marissalee samjlord moernerlab
	Unfolded Protein and Peptide Dynamics Investigated with Single-Molecule FRET and Correlation Spectroscopy from Picoseconds to Seconds† [My Copy] The Journal of Physical Chemistry B, Vol. 112, No. 19. (1 May 2008), pp. 6137-6146. by Daniel Nettels, Armin Hoffmann, Benjamin Schuler posted to no-tag by doktornoe on 2009-10-28 17:38:37 as along with 1 person quanwang
	One- and Two-Photon Excited Fluorescence Lifetimes and Anisotropy Decays of Green Fluorescent Proteins [My Copy] Biophysical Journal, Vol. 78, No. 3. (March 2000), pp. 1589-1598. by A. Volkmer posted to no-tag by doktornoe on 2009-10-28 17:35:49 as
	Pressure-Jump Small-Angle X-Ray Scattering Detected Kinetics of Staphylococcal Nuclease Folding [My Copy] Biophysical Journal, Vol. 80, No. 3. (March 2001), pp. 1518-1523. by J. Woenckhaus posted to no-tag by doktornoe on 2009-10-28 17:32:23 as
	Reaching the protein folding speed limit with large, sub-microsecond pressure jumps [My Copy] Nature Methods, Vol. 6, No. 7. (31 May 2009), pp. 515-519. by Charles Dumont, Tryggvi Emilsson, Martin Gruebele posted to no-tag by doktornoe on 2009-10-28 17:30:36 as
	Dynamical transition of myoglobin revealed by inelastic neutron scattering [My Copy] Nature, Vol. 337, No. 6209. (23 February 1989), pp. 754-756. by Wolfgang Doster, Stephen Cusack, Winfried Petry posted to no-tag by doktornoe on 2009-10-28 17:26:56 as along with 1 person r2s2
	Correlated Dynamics Determining X-Ray Diffuse Scattering from a Crystalline Protein Revealed by Molecular Dynamics Simulation [My Copy] Physical Review Letters, Vol. 95, No. 21. (Nov 2005), 218103. by Lars Meinhold, Jeremy C. Smith posted to no-tag by doktornoe on 2009-10-28 17:25:42 as
	Parametric Inference for Diffusion Processes Observed at Discrete Points in Time: a Survey [My Copy] Internat. Statist. Rev., Vol. 72 (2004), pp. 337-354. by Helle Sorensen posted to no-tag by doktornoe on 2009-10-27 11:55:01 as
	Exact and computationally efficient likelihood-based estimation for discretely observed diffusion processes (with discussion) [My Copy] Journal of the Royal Statistical Society: Series B (Statistical Methodology), Vol. 68, No. 3. (June 2006), pp. 333-382. by Alexandros Beskos, Omiros Papaspiliopoulos, Gareth O. Roberts, Paul Fearnhead posted to no-tag by doktornoe on 2009-10-27 11:49:38 as
	Likelihood Inference for Discretely Observed Nonlinear Diffusions [My Copy] Econometrica, Vol. 69, No. 4. (2001), pp. 959-993. by Ola Elerian, Siddhartha Chib, Neil Shephard posted to no-tag by doktornoe on 2009-10-27 11:39:59 as along with 1 person Borelli
	Experimental determination of upper bound for transition path times in protein folding from single-molecule photon-by-photon trajectories [My Copy] Proceedings of the National Academy of Sciences, Vol. 106, No. 29. (21 July 2009), pp. 11837-11844. by Hoi S. Chung, John M. Louis, William A. Eaton posted to no-tag by doktornoe on 2009-10-25 15:11:57 as along with 5 people and 1 group yanjiang quanwang apaydin paulschlesinger samjlord moernerlab
	Single-molecule nonequilibrium periodic Mg2+-concentration jump experiments reveal details of the early folding pathways of a large RNA [My Copy] Proceedings of the National Academy of Sciences, Vol. 105, No. 18. (6 May 2008), pp. 6602-6607. by Xiaohui Qu, Glenna J. Smith, Kang T. Lee, Tobin R. Sosnick, Tao Pan, Norbert F. Scherer posted to no-tag by doktornoe on 2009-10-25 15:04:39 as along with 1 person zwang
	Observation of a single-beam gradient force optical trap for dielectric particles [My Copy] Opt. Lett., Vol. 11, No. 5. (1 May 1986), pp. 288-290. by A. Ashkin, J. M. Dziedzic, J. E. Bjorkholm, Steven Chu posted to no-tag by doktornoe on 2009-10-25 14:09:32 as along with 8 people nagyd mvanleest tboats dchen weeks hamidohadi kristgy rodney
	Fluorescence Spectroscopy of Single Biomolecules [My Copy] Science, Vol. 283, No. 5408. (12 March 1999), pp. 1676-1683. by Shimon Weiss posted to no-tag by doktornoe on 2009-10-25 13:36:14 as along with 5 people and 1 group haisent toerst FBerkemeier rodney yusdi Kopelman_Group
	Imaging of single molecule diffusion [My Copy] Proceedings of the National Academy of Sciences of the United States of America, Vol. 93, No. 7. (2 April 1996), pp. 2926-2929. by T. Schmidt, G. J. Schütz, W. Baumgartner, H. J. Gruber, H. Schindler posted to no-tag by doktornoe on 2009-10-25 13:33:27 as along with 1 person and 1 group samjlord moernerlab
	Myosin V Walks Hand-Over-Hand: Single Fluorophore Imaging with 1.5-nm Localization [My Copy] Science, Vol. 300, No. 5628. (27 June 2003), pp. 2061-2065. by Ahmet Yildiz, Joseph N. Forkey, Sean A. McKinney, Taekjip Ha, Yale E. Goldman, Paul R. Selvin posted to no-tag by doktornoe on 2009-10-25 13:31:39 as along with 5 people and 3 groups OliverHarriman jdecarre baniel barry rodney structural_bioinformatics Bioinformatics Kopelman_Group
	Multicolor Single-Molecule Spectroscopy with Alternating Laser Excitation for the Investigation of Interactions and Dynamics [My Copy] The Journal of Physical Chemistry B, Vol. 111, No. 2. (1 January 2007), pp. 321-326. by Joachim Ross, Peter Buschkamp, Daniel Fetting, Achim Donnermeyer, Christian M. Roth, Philip Tinnefeld posted to no-tag by doktornoe on 2009-10-25 13:25:38 as along with 4 people and 1 group quanwang samjlord yusdi toerst moernerlab
	Bayesian analysis of single-molecule experimental data [My Copy] Journal of the Royal Statistical Society: Series C (Applied Statistics), Vol. 54, No. 3. (June 2005), pp. 469-506. by S. C. Kou, X. Sunney Xie, Jun S. Liu posted to no-tag by doktornoe on 2009-10-24 18:58:33 as along with 1 person jo_davies
	Protein dynamics from single-molecule fluorescence intensity correlation functions [My Copy] The Journal of Chemical Physics, Vol. 131, No. 9. (2009), 095102. by Irina V. Gopich, Daniel Nettels, Benjamin Schuler, Attila Szabo posted to no-tag by doktornoe on 2009-10-24 18:54:26 as along with 1 person paulschlesinger
	Optical trapping and manipulation of single cells using infrared laser beams [My Copy] Nature, Vol. 330, No. 6150. (31 December 1987), pp. 769-771. by A. Ashkin, J. M. Dziedzic, T. Yamane posted to no-tag by doktornoe on 2009-10-24 18:45:04 as along with 3 people fkowald kristgy NicMag
	Atomic Force Microscope [My Copy] Physical Review Letters, Vol. 56, No. 9. (3 Mar 1986), pp. 930-933. by G. Binnig, C. F. Quate, Ch posted to no-tag by doktornoe on 2009-10-24 18:42:57 as along with 14 people philip-eecs akriesch Boxus devinli shrikondra hannesjouhikainen ewmoore gane5h physicsninja hearoplane bobturner sjanusz ahe davidpearmain
	Mg2+-dependent conformational change of RNA studied by fluorescence correlation and FRET on immobilized single molecules [My Copy] Proceedings of the National Academy of Sciences of the United States of America, Vol. 99, No. 7. (2 April 2002), pp. 4284-4289. by Harold D. Kim, G. Ulrich Nienhaus, Taekjip Ha, Jeffrey W. Orr, James R. Williamson, Steven Chu posted to no-tag by doktornoe on 2009-10-24 18:41:05 as along with 2 people quanwang toerst
	Monitoring the interaction of a single G-protein key binding site with rhodopsin disk membranes upon light activation. [My Copy] Biochemistry, Vol. 48, No. 18. (12 May 2009), pp. 3801-3803. by Tai-Yang Y. Kim, Hiroshi Uji-i, Martina Möller, Benoit Muls, Johan Hofkens, Ulrike Alexiev posted to no-tag by doktornoe on 2009-10-24 18:37:17 as
	Visualizing spatial and temporal heterogeneity of single molecule rotational diffusion in a glassy polymer by defocused wide-field imaging [My Copy] Polymer, Vol. 47, No. 7. (22 March 2006), pp. 2511-2518. by Hiroshi Uji-i, Sergey M. Melnikov, Ania Deres, et al.Giacomo Bergamini, Frans De Schryver, Andreas Herrmann, Klaus Müllen, Jörg Enderlein, Johan Hofkens posted to no-tag by doktornoe on 2009-10-24 18:35:40 as
	Theory of time-resolved single-molecule fluorescence spectroscopy [My Copy] Chemical Physics Letters, Vol. 318, No. 4-5. (25 February 2000), pp. 325-332. by Andrzej Molskia, Johan Hofkens, Thomas Genscha, Noël Boensa, Frans De Schryvera posted to no-tag by doktornoe on 2009-10-24 18:33:31 as
	Probing the free-energy surface for protein folding with single-molecule fluorescence spectroscopy [My Copy] Nature, Vol. 419, No. 6908. (17 October 2002), pp. 743-747. by Benjamin Schuler, Everett A. Lipman, William A. Eaton posted to no-tag by doktornoe on 2009-10-24 18:24:16 as along with 5 people kjell yanjiang toerst FBerkemeier yusdi
	Illuminating Single Molecules in Condensed Matter [My Copy] Science, Vol. 283, No. 5408. (12 March 1999), pp. 1670-1676. by W. E. Moerner, Michel Orrit posted to no-tag by doktornoe on 2009-10-24 18:22:36 as along with 2 people and 1 group samjlord yusdi moernerlab
	Breaking the diffraction resolution limit by stimulated emission: stimulated-emission-depletion fluorescence microscopy [My Copy] Opt. Lett., Vol. 19, No. 11. (1 June 1994), pp. 780-782. by Stefan W. Hell, Jan Wichmann posted to no-tag by doktornoe on 2009-10-24 18:18:08 as along with 7 people Sese marissalee toerst holx pick600 bobturner cherrie
	Imaging Intracellular Fluorescent Proteins at Nanometer Resolution [My Copy] Science, Vol. 313, No. 5793. (15 September 2006), pp. 1642-1645. by Eric Betzig, George H. Patterson, Rachid Sougrat, et al.O. Wolf Lindwasser, Scott Olenych, Juan S. Bonifacino, Michael W. Davidson, Jennifer Lippincott-Schwartz, Harald F. Hess posted to no-tag by doktornoe on 2009-10-24 18:10:06 as along with 13 people and 1 group victorclaessen Sese schmidtm OliverHarriman gabe_rosser ts3435 marissalee baniel samjlord dayjm eyliu lechristophe melting moernerlab
	Peptide Loop-Closure Kinetics from Microsecond Molecular Dynamics Simulations in Explicit Solvent [My Copy] Journal of the American Chemical Society, Vol. 124, No. 23. (1 June 2002), pp. 6563-6568. by In-Chul Yeh, Gerhard Hummer posted to no-tag by doktornoe on 2009-09-24 14:37:22 as
	Single-Molecule Fluorescence Spectroscopy of Protein Folding [My Copy] ChemPhysChem, Vol. 6, No. 7. (2005), pp. 1206-1220. by Benjamin Schuler posted to no-tag by doktornoe on 2009-09-24 14:32:11 as
	Transition States in Protein Folding Kinetics: Modeling Phi-Values of Small Beta-Sheet Proteins [My Copy] Biophys. J., Vol. 94, No. 3. (1 February 2008), pp. 929-937. by Thomas R. Weikl posted to no-tag by doktornoe on 2009-04-08 15:25:16 as
	TRANSITION PATH SAMPLING: Throwing Ropes Over Rough Mountain Passes, in the Dark [My Copy] Annual Review of Physical Chemistry, Vol. 53, No. 1. (2002), pp. 291-318. by Peter G. Bolhuis, David Chandler, Christoph Dellago, Phillip L. Geissler posted to no-tag by doktornoe on 2009-04-08 11:12:33 as along with 5 people Diego_Prada cjryan apaydin allmensch jun
	Structure-function-folding relationship in a WW domain. [My Copy] Proc Natl Acad Sci U S A (28 June 2006) by Marcus Jäger, Yan Zhang, Jan Bieschke, et al.Houbi Nguyen, Maria Dendle, Marianne E E. Bowman, Joseph P P. Noel, Martin Gruebele, Jeffery W W. Kelly posted to no-tag by doktornoe on 2009-04-08 11:06:06 as
	[beta]-Sheet folding mechanisms from perturbation energetics [My Copy] Current Opinion in Structural Biology In Protein-nucleic acid interactions/Folding and binding - Wei Yang and Gregory D Van Dyne/Mikael Oliveberg and Eugene I Shakhnovich, Vol. 16, No. 1. (February 2006), pp. 94-101. by Songpon Deechongkit, Houbi Nguyen, Marcus Jager, Evan T. Powers, Martin Gruebele, Jeffery W. Kelly posted to no-tag by doktornoe on 2009-04-08 11:05:08 as along with 1 person choonpeng
	Engineering a <img src="http://pubs.acs.org/images/gifchars/beta2.gif" border="0" align="middle">-Sheet Protein toward the Folding Speed Limit [My Copy] J. Phys. Chem. B, Vol. 109, No. 32. (18 August 2005), pp. 15182-15186. by H. Nguyen, M. Jager, J. W. Kelly, M. Gruebele posted to no-tag by doktornoe on 2009-04-08 11:04:13 as along with 1 person choonpeng
	Context-dependent contributions of backbone hydrogen bonding to [beta]-sheet folding energetics [My Copy] Nature, Vol. 430, No. 6995. (1 July 2004), pp. 101-105. by Songpon Deechongkit, Houbi Nguyen, Evan T. Powers, Philip E. Dawson, Martin Gruebele, Jeffery W. Kelly posted to no-tag by doktornoe on 2009-04-08 10:59:45 as
	Illustration of transition path theory on a collection of simple examples. [My Copy] The Journal of chemical physics, Vol. 125, No. 8. (28 August 2006) by P. Metzner, C. Schütte, E. Vanden-Eijnden posted to no-tag by doktornoe on 2009-04-08 10:53:36 as along with 1 person Martin8223
	Ten-microsecond MD simulation of a fast-folding WW domain [My Copy] Biophys. J. (13 March 2008), biophysj.108.131565. by Peter L. Freddolino, Feng Liu, Martin H. Gruebele, Klaus Schulten posted to no-tag by doktornoe on 2009-04-08 10:42:24 as along with 7 people and 1 group r2s2 flbarroso RamuAnandakrishnan paulschlesinger skoch3 samjlord biehl Koch_Lab
	Folding free-energy landscape of villin headpiece subdomain from molecular dynamics simulations [My Copy] Proceedings of the National Academy of Sciences, Vol. 104, No. 12. (20 March 2007), pp. 4925-4930. by Hongxing Lei, Chun Wu, Haiguang Liu, Yong Duan posted to no-tag by doktornoe on 2009-04-08 10:41:14 as
	Absolute comparison of simulated and experimental protein-folding dynamics [My Copy] Nature, Vol. 420, No. 6911. (20 October 2002), pp. 102-106. by Christopher D. Snow, Houbi Nguyen, Vijay S. Pande, Martin Gruebele posted to no-tag by doktornoe on 2009-04-08 10:40:06 as along with 3 people Diego_Prada fjc1 samjlord
	Folding simulations of a three-stranded antiparallel β-sheet peptide [My Copy] Proceedings of the National Academy of Sciences of the United States of America, Vol. 97, No. 20. (2000), pp. 10780-10785. by Philippe Ferrara, Amedeo Caflisch posted to no-tag by doktornoe on 2009-04-08 10:35:43 as along with 1 person onufriev
	Pathways to a protein folding intermediate observed in a 1-microsecond simulation in aqueous solution. [My Copy] Science (New York, N.Y.), Vol. 282, No. 5389. (23 October 1998), pp. 740-744. by Y. Duan, P. A. Kollman posted to no-tag by doktornoe on 2009-04-08 10:34:40 as along with 6 people flbarroso Diego_Prada j3xucite allmensch RamuAnandakrishnan choonpeng
	Heterogeneity even at the speed limit of folding: large-scale molecular dynamics study of a fast-folding variant of the villin headpiece. [My Copy] Journal of molecular biology, Vol. 374, No. 3. (30 November 2007), pp. 806-816. by D. L. Ensign, P. M. Kasson, V. S. Pande posted to no-tag by doktornoe on 2009-04-08 10:33:17 as along with 1 person allmensch
	Analysis of single-molecule FRET trajectories using hidden Markov modeling. [My Copy] Biophysical journal, Vol. 91, No. 5. (1 September 2006), pp. 1941-1951. by S. A. McKinney, C. Joo, T. Ha posted to fret hmm by doktornoe on 2009-03-26 13:28:28 as along with 3 people toerst lukzky waszak
	Effect of artificial periodicity in simulations of biomolecules under Ewald boundary conditions: a continuum electrostatics study. [My Copy] Biophysical chemistry, Vol. 78, No. 1-2. (5 April 1999), pp. 69-88. by P. H. Hünenberger, J. A. McCammon posted to no-tag by doktornoe on 2009-02-21 22:17:12 as
	Markov Chains [My Copy] (1998) by J. R. Norris posted to no-tag by doktornoe on 2009-02-21 21:42:05 as
	Assessing the influence of electrostatic schemes on molecular dynamics simulations of secondary structure forming peptides [My Copy] Journal of Physics: Condensed Matter, Vol. 18, No. 14. (2006), pp. S329-S345. by Luca Monticelli, Carlos Simoes, Laura Belvisi, Giorgio Colombo posted to no-tag by doktornoe on 2009-02-20 05:33:58 as
	The Influence of Different Treatments of Electrostatic Interactions on the Thermodynamics of Folding of Peptides† [My Copy] The Journal of Physical Chemistry B, Vol. 109, No. 45. (1 November 2005), pp. 21322-21328. by Andrij Baumketner, Joan-Emma Shea posted to no-tag by doktornoe on 2009-02-20 05:24:40 as