doktornoe's file-import-08-11-23 [at least 200 articles] Export Sort

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	$My PDF t. splettstö\ss er_08_nucleotidedependence.pdf$ Nucleotide-dependence of G-actin conformation from multiple molecular dynamics simulations and observation of a putatively polymerisation-competent superclosed state [My Copy] Proteins, in press (2008) by T. Splettstö\ss er, F. Noé and J. C. Smith posted to file-import-08-11-23 by doktornoe on 2008-11-23 18:10:41 as
	A network-based approach to biomolecular dynamics [My Copy] In From Computational Biophysics to Systems Biology (CBSB07), Vol. NIC Series 36 (2007), pp. 247-250. by F. Noé, J. C. Smith, C. Schütte edited by U. H. E. Hansmann, J. Meinke, S. Mohanty, O. Zimmermann posted to file-import-08-11-23 by doktornoe on 2008-11-23 18:10:41 as
	Data-based parameter estimation of generalized multidimensional Langevin processes [My Copy] Physical Review E, Vol. 76 (2007) by I. Horenko, C. Hartmann, C. Schütte, F. Noé posted to file-import-08-11-23 by doktornoe on 2008-11-23 18:10:41 as
	Transition networks for modeling the kinetics of conformational transitions in macromolecules [My Copy] Current Opinion in Structural Biology, Vol. 18 (2008), pp. 154-162. by F. Noé, S. Fischer posted to file-import-08-11-23 by doktornoe on 2008-11-23 18:10:41 as
	Solvent Electrostriction Driven Peptide Folding revealed by Quasi-Gaussian Entropy Theory and Molecular Dynamics Simulation [My Copy] Journal of Physical Chemistry B, Vol. 112 (2008), pp. 11155-11163. by F. Noé, I. Daidone, J. C. Smith, A. di Nola, A. Amadei posted to file-import-08-11-23 by doktornoe on 2008-11-23 18:10:41 as
	Optimizing in graphs with expensive computation of edge weights [My Copy] In Operations Research Proceedings (2007), pp. 435-440. by F. Noé, M. Oswald, G. Reinelt edited by J. Kalcsics, S. Nickel posted to file-import-08-11-23 by doktornoe on 2008-11-23 18:10:41 as
	Hierarchical Analysis of Conformational Dynamics in Biomolecules: Transition Networks of Metastable States [My Copy] Journal of Chemical Physics, Vol. 126 (2007) by F. Noé, I. Horenko, C. Schütte, J. C. Smith posted to file-import-08-11-23 by doktornoe on 2008-11-23 18:10:41 as
	AM1/d Parameters for Magnesium in Metalloenzymes [My Copy] J. Chem. Theory Comput., Vol. 2 (2006), pp. 1050-1056. by Petra Imhof, Frank Noé, Stefan Fischer, Jeremy C. Smith posted to file-import-08-11-23 by doktornoe on 2008-11-23 18:10:41 as
	Transition Networks as a unifying theme for molecular simulation and computer science [My Copy] In Mathematical Modeling of Biological Systems, Vol. Volume I (2007), pp. 125-144. by F. Noé, J. C. Smith edited by A. Deutsch, L. Brusch, H. Byrne, G. de Vries, H. P. Herzel posted to file-import-08-11-23 by doktornoe on 2008-11-23 18:10:41 as
	Computing Best Transition Pathways in High-Dimensional Dynamical Systems: Application to the alphaL - beta - alphaR Transitions in Octaalanine [My Copy] Multiscale Modeling and Simulation, Vol. 5 (2006), pp. 393-419. by F. Noé, M. Oswald, G. Reinelt, S. Fischer, J. C. Smith posted to file-import-08-11-23 by doktornoe on 2008-11-23 18:10:41 as
	Transition Networks for the Comprehensive Characterization of Complex Conformational Change in Proteins [My Copy] Journal of Chemical Theory and Computation, Vol. 2 (2006), pp. 840-857. by F. Noé, D. Krachtus, J. C. Smith, S. Fischer posted to file-import-08-11-23 by doktornoe on 2008-11-23 18:10:41 as
	Transition Networks: Computational Methods for the Comprehensive Analysis of Complex Rearrangements in Proteins [My Copy] (2006) by F. Noé posted to file-import-08-11-23 by doktornoe on 2008-11-23 18:10:41 as
	Automated Computation of Low-Energy Pathways for Complex Rearrangements in Proteins: Application to the conformational switch of Ras p21 [My Copy] Proteins, Vol. 59 (2005), pp. 534-544. by F. Noé, F. Ille, J. C. Smith, S. Fischer posted to file-import-08-11-23 by doktornoe on 2008-11-23 18:10:41 as
	Protein Dynamics: Glass Transition and Mechanical Function [My Copy] In Advances in Solid State Physics, Vol. 43 (2003), pp. 677-694. by T. Becker, S. Fischer, F. Noe edited by B. Kramer posted to file-import-08-11-23 by doktornoe on 2008-11-23 18:10:40 as
	Computational tools for analysing structural changes in proteins in solution. [My Copy] Applied Bioinformatics, Vol. 2 (2003), pp. 11-17. by F. Noé, S. M. Schwarzl, S. Fischer, J. C. Smith posted to file-import-08-11-23 by doktornoe on 2008-11-23 18:10:40 as
	Principal Components of the Protein Dynamical Transition [My Copy] Physical Review Letters, Vol. 91 (2003) by A. Tournier, J. C. Smith posted to file-import-08-11-23 by doktornoe on 2008-11-23 18:07:03 as
	Similarities between principal components of protein dynamics and random diffusion [My Copy] Physical Review E, Vol. 62 (2000) by Berk Hess posted to file-import-08-11-23 by doktornoe on 2008-11-23 18:07:03 as
	Collective NMR Relaxation Model Applied to Protein Dynamics [My Copy] Phys. Rev. Lett., Vol. 72 (1994), pp. 940-943. by R. Brüschweiler, David A. Case posted to file-import-08-11-23 by doktornoe on 2008-11-23 18:07:03 as
	Principal Component Analysis and Long Time Protein Dynamics [My Copy] J. Phys. Chem., Vol. 100 (1996), pp. 2567-2572. by M. A. Balsera, W. Wriggers, Y. Oono, K. Schulten posted to file-import-08-11-23 by doktornoe on 2008-11-23 18:07:03 as
	Analysis of a complex of statistical variables into principal components [My Copy] J. Edu. Psych., Vol. 24 (1933), pp. 417-441. by H. Hotelling posted to file-import-08-11-23 by doktornoe on 2008-11-23 18:07:03 as
	Vibrational Energy Transfer in a Protein Molecule [My Copy] Phys. Rev. Lett., Vol. 85 (2000), pp. 3970-3973. by Kei Moritsugu, Osamu Miyashita, Akinori Kidera posted to file-import-08-11-23 by doktornoe on 2008-11-23 18:07:03 as
	Gaussian dynamics of folded proteins [My Copy] Phys. Rev. Lett., Vol. 79 (1997), pp. 3090-3093. by T. Haliloglu, I. Bahar, B. Erman posted to file-import-08-11-23 by doktornoe on 2008-11-23 18:07:03 as
	Harmonic Dynamics of Proteins: Normal Modes and Fluctuations in Bovine Pancreatic Trypsin Inhibitor [My Copy] Proc. Nat. Acad. Sci. USA, Vol. 80 (1983), pp. 6571-6575. by Bernard Brooks, Martin Karplus posted to file-import-08-11-23 by doktornoe on 2008-11-23 18:07:03 as
	Computation of low-frequency normal modes in macromolecules: improvements to the method of diagonalization in a mixed basis and application to hemoglobin [My Copy] Comput. Chem., Vol. 19 (1995), pp. 241-246. by D. Perahia, L. Mouawad posted to file-import-08-11-23 by doktornoe on 2008-11-23 18:07:03 as
	Molecular Vibrations [My Copy] (1955) by E. B. Wilson, J. C. Decius, P. C. Cross posted to file-import-08-11-23 by doktornoe on 2008-11-23 18:07:03 as
	Reaction Rate Theory: Fifty Years After Kramers [My Copy] Rev. Mod. Phys., Vol. 62 (1990), pp. 251-342. by P. Hänggi, P. Talkner, M. Borkovec posted to file-import-08-11-23 by doktornoe on 2008-11-23 18:06:47 as
	Optimization of hyperplanar transition states [My Copy] Journal of Chemical Physics, Vol. 115, No. 21. (2001), pp. 9644-9656. by Gisli H. Johannesson, Hannes Jonsson posted to file-import-08-11-23 by doktornoe on 2008-11-23 18:06:47 as
	Stochastic Processes in Physics and Chemistry [My Copy] (2006) by N. G. van Kampen posted to file-import-08-11-23 by doktornoe on 2008-11-23 18:06:38 as
	Energy Landscapes [My Copy] (2003) by D. J. Wales posted to file-import-08-11-23 by doktornoe on 2008-11-23 18:06:38 as
	Parallel Computational Fluid Dynamics: Advanced Numerical Methods, Software and Applications [My Copy] (2003) by Boris Chetverushkin, A. Ecer, Jacques Periaux, N. Satofuka posted to file-import-08-11-23 by doktornoe on 2008-11-23 18:06:38 as
	Digraphs [My Copy] (2002) by Bang J. Jensen, G. Gutin posted to file-import-08-11-23 by doktornoe on 2008-11-23 18:06:38 as
	Molecular Thermodynamics [My Copy] (1999) by D. A. Mcquarrie, J. D. Simon posted to file-import-08-11-23 by doktornoe on 2008-11-23 18:06:38 as
	Statistical Mechanics of Nonequilibrium Liquids [My Copy] (1990) by D. J. Evans, G. P. Morris posted to file-import-08-11-23 by doktornoe on 2008-11-23 18:06:38 as
	Physikalische Chemie [My Copy] (1983) by W. J. Moore, D. O. Hummel posted to file-import-08-11-23 by doktornoe on 2008-11-23 18:06:38 as
	Part 1 (Statistical Physics) [My Copy] Vol. 5 (1980) by L. D. Landau, E. M. Lifshitz posted to file-import-08-11-23 by doktornoe on 2008-11-23 18:06:38 as
	Hydrophobic effects on partial molar volume [My Copy] J. Chem. Phys., Vol. 122 (2005) by Takashi Imai, Fumio Hirata posted to file-import-08-11-23 by doktornoe on 2008-11-23 18:06:28 as
	On the use of the quasi-Gaussian entropy theory in the study of simulated dilute solutions [My Copy] J. Chem. Phys., Vol. 120 (2004), pp. 5226-5234. by M. D'Abramo, M. D'Alessandro, A. Amadei posted to file-import-08-11-23 by doktornoe on 2008-11-23 18:06:27 as
	On the Use of the Quasi-Gaussian Entropy Theory in Systems of Polyatomic Flexible Molecules [My Copy] J. Phys. Chem. B, Vol. 105 (2001), pp. 1834-1844. by A. Amadei, B. Iacono, S. Grego, et al.G. Chillemi, M. E. F. Apol, E. Paci, M. Delfini, A. Di Nola posted to file-import-08-11-23 by doktornoe on 2008-11-23 18:06:27 as
	Untitled [My Copy] Curr. Opin. Struct. Biol., Vol. 11 (2001), pp. 212-216. by V. Munoz posted to file-import-08-11-23 by doktornoe on 2008-11-23 18:06:27 as
	Untitled [My Copy] J. Phys. Chem. B, Vol. 105 (2001), pp. 6387-6395. by B. Linder, R. A. Kromhout posted to file-import-08-11-23 by doktornoe on 2008-11-23 18:06:27 as
	Protein model exhibiting three folding transitions [My Copy] Physica A, Vol. 291 (2001), pp. 60-70. by A. Bakk, A. Hansen, K. Sneppen posted to file-import-08-11-23 by doktornoe on 2008-11-23 18:06:27 as
	Pathways in Two-State Protein Folding [My Copy] Biophys. J., Vol. 79 (2000), pp. 2722-2727. by A. Bakk, J. S. Hoye, A. Hansen, K. Sneppen, M. H. Jensen posted to file-import-08-11-23 by doktornoe on 2008-11-23 18:06:27 as
	Hydrophobicity at small and large length scales [My Copy] J. Phys. Chem. B, Vol. 103 (1999), pp. 4570-4577. by K. Lum, D. Chandler, J. D. Weeks posted to file-import-08-11-23 by doktornoe on 2008-11-23 18:06:27 as
	Untitled [My Copy] J. Phys. Chem. B, Vol. 103 (1999), pp. 10325-10330. by B. Linder, R. A. Kromhout posted to file-import-08-11-23 by doktornoe on 2008-11-23 18:06:27 as
	Untitled [My Copy] Phys. Rev. Lett., Vol. 82 (1999), pp. 3372-3375. by C. Micheletti, J. R. Banavar, A. Maritan, F. Seno posted to file-import-08-11-23 by doktornoe on 2008-11-23 18:06:27 as
	On the use of the quasi-Gaussian entropy theory in noncanonical ensembles. I. Prediction of density dependence of thermodynamic properties [My Copy] J. Chem. Phys, Vol. 109 (1998), pp. 3016-3027. by A. Amadei, M. E. F. Apol, H. J. C. Berendsen posted to file-import-08-11-23 by doktornoe on 2008-11-23 18:06:27 as
	On the use of the quasi-Gaussian entropy theory in noncanonical ensembles. I. Prediction of temperature dependence of thermodynamic properties [My Copy] J. Chem. Phys, Vol. 109 (1998), pp. 3004-3016. by A. Amadei, M. E. F. Apol, H. J. C. Berendsen posted to file-import-08-11-23 by doktornoe on 2008-11-23 18:06:27 as
	Extensions of the quasi-Gaussian entropy theory [My Copy] J. Chem. Phys, Vol. 106 (1997), pp. 1893-1912. by A. Amadei, M. E. F. Apol, H. J. C. Berendsen posted to file-import-08-11-23 by doktornoe on 2008-11-23 18:06:27 as
	The quasi-Gaussian entropy theory: Free energy calculations based on the potential energy distribution function [My Copy] J. Chem. Phys, Vol. 104 (1996), pp. 1560-1574. by A. Amadei, M. E. F. Apol, A. Di Nola, H. J. C. Berendsen posted to file-import-08-11-23 by doktornoe on 2008-11-23 18:06:27 as
	A theoretical search for folding/unfolding nuclei in three-dimensional protein structures [My Copy] Proc. Nat. Acad. Sci. USA, Vol. 96 (1996), pp. 11311-11316. by O. V. Galzitskaya, Alexei V. Finkelstein posted to file-import-08-11-23 by doktornoe on 2008-11-23 18:06:27 as

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