dpollard's library 484 articles Export

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	Genetic architecture of complex traits: Large phenotypic effects and pervasive epistasis [My Copy] Proceedings of the National Academy of Sciences, Vol. 105, No. 50. (16 December 2008), pp. 19910-19914. by Haifeng Shao, Lindsay C. Burrage, David S. Sinasac, et al.Annie E. Hill, Sheila R. Ernest, William O'Brien, Hayden-William Courtland, Karl J. Jepsen, Andrew Kirby, E. J. Kulbokas, Mark J. Daly, Karl W. Broman, Eric S. Lander, Joseph H. Nadeau posted to effect_size epistasis qtl rockman_journal_club by dpollard on 2009-02-05 20:56:22 as along with 4 people and 1 group zwang turnersd daveGerrard lp2 RockmanLab
	Rapid SNP Discovery and Genetic Mapping Using Sequenced RAD Markers [My Copy] PLoS ONE, Vol. 3, No. 10. (13 October 2008), e3376. by Nathan A. Baird, Paul D. Etter, Tressa S. Atwood, et al.Mark C. Currey, Anthony L. Shiver, Zachary A. Lewis, Eric U. Selker, William A. Cresko, Eric A. Johnson posted to mapping method rockman_journal_club snps by dpollard on 2009-01-05 19:47:49 as along with 1 group RockmanLab
	THE GENETICS OF CAENORHABDITIS ELEGANS [My Copy] Genetics, Vol. 77, No. 1. (1 May 1974), pp. 71-94. by S. Brenner posted to c_elegans rockman_journal_club by dpollard on 2008-12-09 22:10:10 as along with 4 people and 2 groups duncan742 thegoose2 zuludigital tharris RockmanLab C. elegans / WormBase
	Sequential Elimination of Major-Effect Contributors Identifies Additional Quantitative Trait Loci Conditioning High-Temperature Growth in Yeast [My Copy] Genetics, Vol. 180, No. 3. (1 November 2008), pp. 1661-1670. by Himanshu Sinha, Lior David, Renata C. Pascon, et al.Sandra Clauder-Munster, Sujatha Krishnakumar, Michelle Nguyen, Getao Shi, Jed Dean, Ronald W. Davis, Peter J. Oefner, John H. Mccusker, Lars M. Steinmetz posted to effect_size qtl rockman_journal_club yeast by dpollard on 2008-12-02 19:21:14 as along with 1 group RockmanLab
	A genome-wide approach to identifying novel-imprinted genes. [My Copy] Hum Genet, Vol. 122, No. 6. (January 2008), pp. 625-634. by K. S. Pollard, D. Serre, X. Wang, et al.H. Tao, E. Grundberg, T. J. Hudson, A. G. Clark, K. Frazer posted to allele-specific array expression method rockman_journal_club by dpollard on 2008-06-27 21:03:45 as along with 4 people and 1 group alweber bpcusack nolodie gjuggler RockmanLab
	Genome-wide allele-specific expression analysis using Massively Parallel Signature Sequencing (MPSS) reveals cis- and trans-effects on gene expression in maize hybrid meristem tissue. [My Copy] Plant molecular biology, Vol. 66, No. 5. (March 2008), pp. 551-563. by M. Guo, S. Yang, M. Rupe, et al.B. Hu, D. R. Bickel, L. Arthur, O. Smith posted to allele-specific expression massively_parallel_signature_sequencing method rockman_journal_club by dpollard on 2008-06-27 21:00:03 as along with 1 person and 1 group caseybrown RockmanLab
	Analysis of allelic differential expression in human white blood cells [My Copy] Genome Res., Vol. 16, No. 3. (1 March 2006), pp. 331-339. by Krishna P. V. Pant, Heng Tao, Erica J. Beilharz, Dennis G. Ballinger, David R. Cox, Kelly A. Frazer posted to allele-specific array expression method rockman_journal_club by dpollard on 2008-06-27 20:54:12 as along with 5 people and 1 group xwbcn RMGraze qfwills emarker mimulus_99 RockmanLab
	SNP-specific array-based allele-specific expression analysis. [My Copy] Genome research, Vol. 18, No. 5. (27 May 2008), pp. 771-779. by H. T. Bjornsson, T. J. Albert, C. M. Ladd-Acosta, et al.R. D. Green, M. A. Rongione, C. M. Middle, R. A. Irizarry, K. W. Broman, A. P. Feinberg posted to allele-specific array expression method rockman_journal_club by dpollard on 2008-06-27 20:50:13 as along with 5 people and 1 group vplagnol gruberjd xwbcn guhjy rschulz RockmanLab
	Allelic Variation in Gene Expression Is Common in the Human Genome [My Copy] Genome Res., Vol. 13, No. 8. (1 August 2003), pp. 1855-1862. by Shuen H. Lo, Zhining Wang, Ying Hu, et al.Howard H. Yang, Sheryl Gere, Kenneth H. Buetow, Maxwell P. Lee posted to affy_array allele-specific expression method rockman_journal_club by dpollard on 2008-06-27 20:44:16 as along with 4 people and 1 group RMGraze qfwills emarker mimulus_99 RockmanLab
	Differential allelic expression in the human genome: a robust approach to identify genetic and epigenetic cis-acting mechanisms regulating gene expression. [My Copy] PLoS genetics, Vol. 4, No. 2. (29 February 2008), e1000006. by D. Serre, S. Gurd, B. Ge, et al.R. Sladek, D. Sinnett, E. Harmsen, M. Bibikova, E. Chudin, D. L. Barker, T. Dickinson, J. B. Fan, T. J. Hudson posted to allele-specific expression illumina_beads method rockman_journal_club by dpollard on 2008-06-27 20:36:21 as along with 6 people and 2 groups fenghezi athma gruberjd guhjy vplagnol caseybrown cis-regulatory-evolution RockmanLab
	PPW-1, a PAZ/PIWI protein required for efficient germline RNAi, is defective in a natural isolate of C. elegans. [My Copy] Curr Biol, Vol. 12, No. 17. (3 September 2002), pp. 1535-1540. by M. Tijsterman, K. L. Okihara, K. Thijssen, R. H. Plasterk posted to c_elegans natural_variation rnai rockman_journal_club worms by dpollard on 2008-05-29 00:22:53 as along with 3 people and 2 groups thegoose2 tharris tardigrade C. elegans / WormBase RockmanLab
	Mapping mendelian factors underlying quantitative traits using RFLP linkage maps. [My Copy] Genetics, Vol. 121, No. 1. (January 1989), pp. 185-199. by E. S. Lander, D. Botstein posted to interval_mapping qtl rockman_journal_club seminal_paper by dpollard on 2008-05-22 21:34:29 as along with 6 people and 1 group fisherp Hans45 Ayest raiyar lp2 mcgannd RockmanLab
	The evolutionary significance of cis-regulatory mutations [My Copy] Nature Reviews Genetics, Vol. 8, No. 3., pp. 206-216. by Gregory A. Wray posted to cis_regulatory_elements polymorphism regulatory_evolution review variation by dpollard on 2007-11-08 00:12:33 as along with 9 people and 4 groups athma maximilianh provero brant dchughes lusk mimulus_99 cisevol emptyhb EisenLab G4ID Genetics-of-Gambling cis-regulatory-evolution
	A stochastic model for the evolution of transcription factor binding site abundance. [My Copy] J Theor Biol (7 March 2007) by Günter P P. Wagner, Wolfgang Otto, Vincent Lynch, Peter F F. Stadler posted to binding_site model turnover by dpollard on 2007-05-23 01:02:56 as along with 3 people and 2 groups thegoose bmajoros cisevol EisenLab cis-regulatory-evolution
	Flexible promoter architecture requirements for coactivator recruitment [My Copy] BMC Molecular Biology, Vol. 7, No. 1. (28 April 2006), 16. by Derek Y. Chiang, David A. Nix, Ryan K. Shultzaberger, Audrey P. Gasch, Michael B. Eisen posted to binding expression grammar promoter spacing transcription yeast by dpollard on 2006-05-21 05:08:26 as along with 2 people and 1 group JustinCrocker postrational EisenLab
	Strong region-specific heterogeneity in base composition evolution on the Drosophila X chromosome. [My Copy] Genetics (17 March 2006) by Wen-Ya Y. Ko, Shengfu Piao, Hiroshi Akashi posted to base composition drosophila evolution gene nonstationary rate reconstruction tree variation by dpollard on 2006-03-31 23:50:30 as along with 1 group EisenLab
	Contrasting the efficacy of selection on the X and autosomes in Drosophila. [My Copy] Molecular biology and evolution, Vol. 25, No. 2. (1 February 2008), pp. 454-467. by Nadia D. Singh, Amanda M. Larracuente, Andrew G. Clark posted to drosophila selection x_vs_autosomes by dpollard on 2008-01-11 18:03:53 as along with 1 person and 1 group daveGerrard EisenLab
	MORPH: Probabilistic Alignment Combined with Hidden Markov Models of cis-Regulatory Modules [My Copy] PLoS Computational Biology, Vol. 3, No. 11. (1 November 2007), e216. by Saurabh Sinha, Xin He posted to alignment alignment_accuracy binding_site_alignment brant_presented cis_regulatory_elements eisen_journal_club method round_robin by dpollard on 2007-11-16 23:53:34 as along with 7 people and 2 groups ana cjeans zwang maximilianh hpaces Ema uwe EisenLab cis-regulatory-evolution
	The locus of evolution: evo devo and the genetics of adaptation. [My Copy] Evolution; international journal of organic evolution, Vol. 61, No. 5. (May 2007), pp. 995-1016. by Hopi E. Hoekstra, Jerry A. Coyne posted to adaptation cis_vs_trans evo_devo regulatory_evolution review by dpollard on 2007-06-14 23:50:07 as along with 15 people and 3 groups isimpson qwermish jbsaltz gjuggler stevanspringer mcphee balicea bpcusack TaqSys epigenetics jayster4 mimulus_99 mjoach kndiaye rvosa Jarman Lab EisenLab FAB-lab
	Large Scale Discovery of Promoter Motifs in Drosophila melanogaster [My Copy] PLoS Computational Biology, Vol. preprint, No. 2006. (1 December 2006), e7.eor. by Thomas A. Down, Casey M. Bergman, Jing Su, Tim J. Hubbard posted to drosophila eisen_journal_club emily_presented motif prediction promoter round_robin by dpollard on 2006-12-13 22:18:54 as along with 1 group EisenLab
	Estimating the Neutral Rate of Nucleotide Substitution Using Introns. [My Copy] Mol Biol Evol (22 November 2006) by Michael M M. Hoffman, Ewan Birney posted to evolution neutral rate by dpollard on 2006-12-01 23:24:04 as along with 1 group EisenLab
	Evolutionary population genetics of promoters: Predicting binding sites and functional phylogenies. [My Copy] Proc Natl Acad Sci U S A, Vol. 102, No. 44. (1 November 2005), pp. 15936-15941. by V. Mustonen, M. Lässig posted to binding evolution polymorphism promoter selection transcription turnover by dpollard on 2006-06-10 00:48:36 as along with 4 people and 2 groups kaarsinogen lusk cisevol emptyhb EisenLab cis-regulatory-evolution
	Ubiquitous selective constraints in the Drosophila genome revealed by a genome-wide interspecies comparison. [My Copy] Genome Res (2 June 2006) by Daniel L L. Halligan, Peter D D. Keightley posted to constraint drosophila evolution purifying selection by dpollard on 2006-06-09 22:48:45 as along with 7 people and 3 groups tkmaia caseybrown RMGraze penka jri cisevol emptyhb EisenLab Nie cis-regulatory-evolution
	Recently evolved genes identified from Drosophila yakuba and D. erecta accessory gland ESTs. [My Copy] Genetics (16 December 2005) by David Begun, Heather Lindfors, Melissa Thompson, Alisha Holloway posted to adaptive drosophila evolution gene noncoding by dpollard on 2006-03-21 19:56:01 as along with 1 group EisenLab
	Toward Automatic Reconstruction of a Highly Resolved Tree of Life [My Copy] Science, Vol. 311, No. 5765. (3 March 2006), pp. 1283-1287. by Francesca D. Ciccarelli, Tobias Doerks, Christian von Mering, Christopher J. Creevey, Berend Snel, Peer Bork posted to concatonation life phylogeny reconstruction tree by dpollard on 2006-03-21 19:02:31 as along with 20 people and 6 groups pablocarb cmura adampah druvus fhsantanna kinestetika dparks Retchless knaseanka tny dchughes nirfriedman cmm azazello wenhan maximilianh cmzmasek lonshy diamantis Ema microbiology_nijmegen EisenLab FAB-lab G4ID Genetics-of-Gambling MBLAB
	PLoS Computational Biology: Genome-Wide Identification of Human Functional DNA Using a Neutral Indel Model [My Copy] posted to drosophila evolution intergenic mutation by dpollard on 2006-01-13 01:59:45 as along with 1 group EisenLab
	Differential chromatin marking of introns and expressed exons by H3K36me3. [My Copy] Nature genetics (1 February 2009) by Paulina Kolasinska-Zwierz, Thomas Down, Isabel Latorre, Tao Liu, X Shirley S. Liu, Julie Ahringer posted to c_elegans chromatin_modification by dpollard on 2009-05-05 17:00:25 as along with 8 people and 1 group bpcusack inesdesantiago absterga fenghezi Dulcinea dchughes djkt WanderingAengus RockmanLab
	A study on the mapping of quantitative trait loci in advanced populations derived from two inbred lines. [My Copy] Genetical research, Vol. 91, No. 2. (April 2009), pp. 85-99. by C. H. Kao, M. H. Zeng posted to advanced_intercross inbred_lines mapping qtl by dpollard on 2009-05-05 16:25:56 as along with 1 group RockmanLab
	The Genetic Signatures of Noncoding RNAs [My Copy] PLoS Genet, Vol. 5, No. 4. (24 April 2009), e1000459. by John S. Mattick posted to effect_size noncoding_rna phenotypic_effect by dpollard on 2009-05-05 16:18:19 as along with 21 people and 2 groups Zephyrus antonkratz bertelsen frohike natstreet guhjy gdb giovenko galka8_diploma aditi9783 daforerog ealloza hrogers coela ilyashl fenghezi reyez maximilianh giovanni djkt stajich RockmanLab Mycology
	High Nucleotide Divergence in Developmental Regulatory Genes Contrasts with the Structural Elements of Olfactory Pathways in Caenorhabditis. [My Copy] Genetics (25 February 2009) by Richard Jovelin, Joseph P P. Dunham, Frances S S. Sung, Patrick C C. Phillips posted to c_elegans rockman_journal_club substitution_rate_variation by dpollard on 2009-04-30 19:44:46 as along with 1 person and 1 group JustinCrocker RockmanLab
	Big Genomes Facilitate the Comparative Identification of Regulatory Elements [My Copy] PLoS ONE, Vol. 4, No. 3. (4 March 2009), e4688. by Brant K. Peterson, Emily E. Hare, Venky N. Iyer, et al.Steven Storage, Laura Conner, Daniel R. Papaj, Rick Kurashima, Eric Jang, Michael B. Eisen posted to constraint drosophila genome_size noncoding_dna by dpollard on 2009-04-15 20:05:54 as along with 8 people and 2 groups natstreet lusk JustinCrocker daveGerrard emmahe maximilianh trfield idoerg RockmanLab BergmanLab
	Local DNA topography correlates with functional noncoding regions of the human genome. [My Copy] Science (New York, N.Y.), Vol. 324, No. 5925. (17 April 2009), pp. 389-392. by Stephen C. Parker, Loren Hansen, Hatice Ozel O. Abaan, Thomas D. Tullius, Elliott H. Margulies posted to conservation noncoding_dna structure by dpollard on 2009-03-24 00:19:34 as along with 38 people and 6 groups daveGerrard operon sujaikumar antonkratz pradiptaray roys gjuggler benjaminsb gdb hagechouchin443 tomtullius scjparker psique orzenil emptyhb ilyashl coela VGreiff APRegier myzhang pkonings akundaje athma absterga rpatward timflutre stajich bpcusack jbhiatt djkt dhlbh friendpine inesdesantiago JustinCrocker aprasad maximilianh idonaldson kshundyak BergmanLab Mycology structural_bioinformatics RockmanLab EisenLab cis-regulatory-evolution
	ChIP-seq accurately predicts tissue-specific activity of enhancers [My Copy] Nature, Vol. 457, No. 7231. (12 February 2009), pp. 854-858. by Axel Visel, Matthew J. Blow, Zirong Li, et al.Tao Zhang, Jennifer A. Akiyama, Amy Holt, Ingrid Plajzer-Frick, Malak Shoukry, Crystal Wright, Feng Chen, Veena Afzal, Bing Ren, Edward M. Rubin, Len A. Pennacchio posted to chip_seq method by dpollard on 2009-02-12 22:09:48 as along with 22 people and 2 groups tonamswish ewilban1 samanthacooper ashkelon13 isimpson gdb dnewburger jochenG bertelsen oelemento rpatward cajunsushi WanderingAengus absterga provero cassj anphony caseybrown biomcgary xingxu idonaldson djkt RockmanLab cis-regulatory-evolution
	Epistasis [mdash] the essential role of gene interactions in the structure and evolution of genetic systems [My Copy] Nat Rev Genet, Vol. 9, No. 11. (November 2008), pp. 855-867. by Patrick C. Phillips posted to epistasis review by dpollard on 2009-02-10 23:08:14 as along with 12 people and 1 group Zephyrus guhjy misonneh maren daveGerrard lp2 xingxu pkonings jbhiatt yyby cheyloveday dchughes RockmanLab
	Purification of proteins associated with specific genomic Loci. [My Copy] Cell, Vol. 136, No. 1. (9 January 2009), pp. 175-186. by Jérôme Déjardin, Robert E. Kingston posted to method protein_dna_interaction proteomics transcription_factor by dpollard on 2009-02-10 20:46:54 as along with 8 people and 1 group TorstenWaldminghaus rschulz fenghezi xingxu christoffpale ericsuh faion rjlawren RockmanLab
	Evolution of Regulatory Sequences in 12 Drosophila Species [My Copy] PLoS Genet, Vol. 5, No. 1. (January 2009), e1000330. by Jaebum Kim, Xin He, Saurabh Sinha posted to drosophila regulatory_sequence_evolution by dpollard on 2009-01-16 17:14:18 as along with 12 people and 3 groups daveGerrard kevinemamy caseybrown druvus WanderingAengus JustinCrocker cisevol cajunsushi djkt emptyhb cabbagesofdoom Stew RockmanLab BergmanLab cis-regulatory-evolution
	Analysis of combinatorial cis-regulation in synthetic and genomic promoters [My Copy] Nature, Vol. 457, No. 7226. (23 November 2008), pp. 215-218. by Jason Gertz, Eric D. Siggia, Barak A. Cohen posted to grammar regulatory_sequence yeast by dpollard on 2009-01-14 16:02:20 as along with 17 people and 4 groups Vincent_Rouilly pcarbo emptyhb TRHvidsten rpatward jbhiatt lusk maximilianh roys druvus sebastien_vigneau pengchy sandersl djkt siebert isimpson xianjun TranscriptionalRegulationWithThermodynamicModels RockmanLab cis-regulatory-evolution microbiology_nijmegen
	Hitchhiking effects of recurrent beneficial amino acid substitutions in the Drosophila melanogaster genome [My Copy] Genome Research, Vol. 17, No. 12. (7 December 2007), pp. 1755-1762. by Peter Andolfatto posted to drosophila hitchhiking positive_selection by dpollard on 2008-02-13 06:38:24 as along with 5 people and 1 group druvus djkt usagi-kirin mimulus_99 emptyhb EisenLab
	Gene network inference via structural equation modeling in genetical genomics experiments. [My Copy] Genetics, Vol. 178, No. 3. (3 March 2008), pp. 1763-1776. by B. Liu, A. de la Fuente, I. Hoeschele posted to eqtl method network system by dpollard on 2008-02-12 23:12:26 as along with 8 people and 1 group roys Scis0000002 orzenil raiyar xingxu caseybrown smgomez guhjy EisenLab
	Alignment Uncertainty and Genomic Analysis [My Copy] Science, Vol. 319, No. 5862. (25 January 2008), pp. 473-476. by Karen M. Wong, Marc A. Suchard, John P. Huelsenbeck posted to alignment alignment_accuracy by dpollard on 2008-02-01 06:16:50 as along with 32 people and 2 groups operon walshtp darian ptrobajo friendpine skembel druvus treangen bpb aprasad dayjm pradiptaray tny djkt cjeans zwang lisa1 cactus biomcgary lilou dandaman gjuggler renatomilani mclarenv youdon bpcusack guhjy jdelcampo adacier gracio timflutre jfr EisenLab microbiology_nijmegen
	Inferring genome-scale rearrangement phylogeny and ancestral gene order: a Drosophila case study [My Copy] Genome Biology, Vol. 8, No. 11. (08 November 2007), R236. by Arjun Bhutkar, William Gelbart, Temple Smith posted to drosophila phylogeny by dpollard on 2008-01-11 18:06:11 as along with 7 people and 1 group daveGerrard operon indigoviolet balicea maximilianh hpaces isimpson EisenLab
	Characterization of the Duffy gene promoter: evidence for tissue-specific abolishment of expression in Fy(a-b-) of black individuals. [My Copy] Biochem Biophys Res Commun, Vol. 222, No. 3. (24 May 1996), pp. 852-859. by S. Iwamoto, J. Li, N. Sugimoto, H. Okuda, E. Kajii posted to cis_regulatory_elements expression_divergence expression_pattern expression_polymorphism human modularity regulatory_evolution regulatory_sequence_evolution by dpollard on 2007-12-05 23:03:10 as along with 2 groups EisenLab cis-regulatory-evolution
	Detection of the signature of natural selection in humans: evidence from the Duffy blood group locus. [My Copy] Am J Hum Genet, Vol. 66, No. 5. (May 2000), pp. 1669-1679. by M. T. Hamblin, A. Di Rienzo posted to binding_site cis_regulatory_elements regulatory_evolution regulatory_polymorphism regulatory_sequence_evolution turnover by dpollard on 2007-12-05 22:53:19 as along with 2 groups EisenLab cis-regulatory-evolution
	Disruption of a GATA motif in the Duffy gene promoter abolishes erythroid gene expression in Duffy-negative individuals. [My Copy] Nat Genet, Vol. 10, No. 2. (June 1995), pp. 224-228. by C. Tournamille, Y. Colin, J. P. Cartron, C. Le Van Kim posted to binding_site cis_regulatory_elements regulatory_evolution regulatory_polymorphism regulatory_sequence_evolution turnover by dpollard on 2007-12-05 22:51:01 as along with 2 groups EisenLab cis-regulatory-evolution
	Dominant gain-of-function mutations that lead to misregulation of the C. elegans heterochronic gene lin-14, and the evolutionary implications of dominant mutations in pattern-formation genes. [My Copy] Dev Suppl, Vol. 1 (1991), pp. 47-54. by G. Ruvkun, B. Wightman, T. Bürglin, P. Arasu posted to cis_regulatory_elements co_dominance dominance nematode semi_dominance seminal_paper by dpollard on 2007-11-26 00:38:21 as along with 2 people and 2 groups thegoose2 tharris C. elegans / WormBase EisenLab
	Accounting for Bias from Sequencing Error in Population Genetic Estimates. [My Copy] Mol Biol Evol (2 November 2007) by Philip L F L. Johnson, Montgomery Slatkin posted to parameter_estimation polymorphism population_genetics sequencing_error by dpollard on 2007-11-25 05:46:42 as along with 3 people and 1 group bpb jmeppley bpcusack EisenLab
	Natural selection on protein-coding genes in the human genome [My Copy] Nature, Vol. 437, No. 7062. (20 October 2005), pp. 1153-1157. by Carlos D. Bustamante, Adi Fledel-Alon, Scott Williamson, et al.Rasmus Nielsen, Melissa Todd Hubisz, Stephen Glanowski, David M. Tanenbaum, Thomas J. White, John J. Sninsky, Ryan D. Hernandez, Daniel Civello, Mark D. Adams, Michele Cargill, Andrew G. Clark posted to gene human population_genetics test_for_selection by dpollard on 2007-11-19 07:34:51 as along with 24 people and 5 groups tomhebbron VGreiff ilyashl athma provero jimithystok gjuggler renewang jo_davies stevanspringer operon jwortman aprasad dayjm balajis marcius hdopazo djkt JBEgwa01 ramensky Garamonfok iris42 dmc shoshin EisenLab FAB-lab BioinfoCIPF SGU-CIPF Durbin group
	The cost of inbreeding in Arabidopsis. [My Copy] Nature, Vol. 416, No. 6880. (4 April 2002), pp. 531-534. by C. D. Bustamante, R. Nielsen, S. A. Sawyer, K. M. Olsen, M. D. Purugganan, D. L. Hartl posted to method population_genetics test_for_selection by dpollard on 2007-11-19 07:32:25 as along with 2 people and 1 group emptyhb djkt EisenLab
	Reliable prediction of regulator targets using 12 Drosophila genomes [My Copy] Genome Research, Vol. 17, No. 12. (7 December 2007), pp. 1919-1931. by Pouya Kheradpour, Alexander Stark, Sushmita Roy, Manolis Kellis posted to cis_regulatory_elements drosophila eisen_journal_club matt_presented prediction round_robin by dpollard on 2007-11-17 00:01:32 as along with 9 people and 2 groups heliopais valeriehilgers lp2 nklee maximilianh roys caseybrown emptyhb barwil EisenLab cis-regulatory-evolution
	Similar Levels of X-linked and Autosomal Nucleotide Variation in African and non-African populations of Drosophila melanogaster [My Copy] BMC Evolutionary Biology, Vol. 7 (25 October 2007), 202. by Nadia D. Singh, Michael J. Macpherson, Jeffrey D. Jensen, Dmitri A. Petrov posted to drosophila polymorphism population_genetics population_structure by dpollard on 2007-11-14 20:37:17 as along with 1 person and 1 group PetrovLab EisenLab

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drosophila	119
eisen_journal_club	115
round_robin	94
evolution	71
method	56
cis_regulatory_elements	51
gene	45
prediction	43
expression	40
binding_site	32
transcription	27
alignment	25
yeast	25
review	24
development	22
variation	22
in_depth_suggestion	20
transcription_factor	19
motif	18
phylogeny	18
selection	18
expression_pattern	17
turnover	17
binding	16
genome_architecture	16
polymorphism	16
regulatory_evolution	16
rockman_journal_club	16
adaptive	15
conserved	15
dan_presented	15
network	15
qtl	15
rate	15
gene_expression	14
human	14
modeling	14
devin_presented	13
genome_size	13
noncoding	13
c_elegans	12
colin_presented	12
grammar	12
indels	12
pattern	12
population_genetics	12
chip_chip	11
in_depth	11
promoter	11
rnai	11
embryonic_patterning	10
regulatory_sequence_evolution	10
rich_presented	10
allele-specific	9
association_mapping	9
eqtl	9
expression_divergence	9
insect	9
model	9
ab_initio	8
alignment_accuracy	8
angela_presented	8
duplication	8
mammal	8
regulatory_sequence	8
small_rnas	8
stuart_presented	8
venky_presented	8
adaptation	7
chromatin	7
constraint	7
lab_library	7
matt_presented	7
protein	7
pwm	7
regulation	7
speciation	7
annotation	6
array	6
clustering	6
comparative	6
conservation	6
crm	6
embryo	6
emily_presented	6
epistasis	6
expression_polymorphism	6
regulatory_polymorphism	6
brain	5
enhancer	5
evo_devo	5
insulators	5
motif_detection	5
mutation	5
nucleosome	5
population_structure	5
recombination	5
reconstruction	5
regulatory_network	5
seminal_paper	5
structure	5
system	5
transposable_elements	5
vertebrate	5
bacteria	4
brant_presented	4
chromatin_modification	4
discovery	4
dynamics	4
environment	4
gene_family	4
genome_wide	4
indel	4
insects	4
lenny_presented	4
nervous	4
neuro	4
snps	4
te	4
worms	4
accuracy	3
affinity	3
argonaute	3
cis_vs_trans	3
coactivator	3
comparative_genomics	3
correlation	3
dominance	3
effect_size	3
enhanceosome	3
experimental_evolution	3
fitness	3
genome	3
genome_sequence	3
genomic	3
intergenic	3
mapping	3
mechanism	3
microrna	3
morphological_evolution	3
mouse	3
multiple_alignment	3
nematode	3
neutral	3
noncoding_dna	3
spacing	3
stew_presented	3
test_for_selection	3
tree	3
whole_genome	3
3utr	2
adaptive_evolution	2
association	2
binding_site_alignment	2
bootstrap	2
cis	2
coexpression	2
color_variation	2
complex_trait	2
composition	2
concatonation	2
convergent	2
corepression	2
database	2
divergence_estimation	2
gene_prediction	2
gene_tree	2
germline	2
gradient	2
histone	2
hitchhiking	2
hox	2
hybrid	2
hypersensitive	2
in-depth	2
inversion	2
kenetics	2
length	2
lineage_specific	2
linkage	2
loss	2
meiosis	2
modularity	2
noncoding_rna	2
noncoding_transcription	2
non-essential	2
parameter_estimation	2
pigmentation	2
placticity	2
positive_selection	2
protein_function_evolution	2
proteomics	2
pseudogene	2
purifying	2
repression	2
rna	2
sechellia	2
sequence_specificity	2
specific	2
translation_rate	2
vertibrates	2
website	2
454	1
acid	1
advanced_intercross	1
affy_array	1
americana	1
amino	1
amino_acid	1
anterior_posterior	1
antisense	1
antiviral	1
ap_x_dv	1
assembly	1
background_selection	1
base	1
bee	1
biochemical	1
biophysical_model	1
body	1
bristle	1
browser	1
cgh	1
chimp	1
chimpanzee	1
chip_seq	1
cis_reg_polymorphism	1
cnv	1
co_dominance	1
codon_usage	1
coevolution	1
cofactor	1
cognative_evolution	1
computational	1
concordance	1
cutoff	1
danr_presented	1
data	1
degredation	1
demography	1
detection	1
diffusion	1
disease	1
dnasei	1
dn_ds_ratio	1
domain	1
domains	1
domestication	1
dosage_compensation	1
encode	1
energy_landscape	1
eukaryote	1
even-skipped	1
experimental	1
experssion_pattern	1
extension	1
extrinsic	1
false_positive	1
fish	1
formation	1
fst	1
ftz	1
gc_content	1
genealogy	1
gene_by_environment_interaction	1
gene-expression	1
gene_function_evolution	1
genetic	1
genetic_interactions	1
genetic_screen	1
gene_vs_species_tree	1
genome_structure	1
germ	1
gwas	1
haplotype_inference	1
heart	1
helical_phasing	1
heterogeneity	1
heterotachy	1
horizontal_transfer	1
illumina_beads	1
imprinting	1
inbred_lines	1
in_situ	1
integration	1
interval_mapping	1
intron	1
intron_evolution	1
in_vitro	1
in_vivo	1
karyotype	1
lethality	1
life	1
lineage	1
low_frequency	1
markov	1
massively_parallel_signature_sequencing	1
maternal	1
matrix	1
metazoan	1
micro_array	1
morphology	1
multi-copy	1
multiple_testing	1
mutational_load	1
natural_selection	1
natural_variation	1
neo-y	1
neural	1
next_gen_sequencing	1
noise	1
non-neutral	1
nonstationary	1
not_recommended	1
odorant	1
paleoecology	1
parallel_evolution	1
paralog	1
paralog_divergence	1
phenotype	1
phenotypic_effect	1
physical	1
pirna	1
plan	1
plants	1
post_transcriptional_modification	1
properties	1
protein_dna_interaction	1
qst	1
range	1
rapid	1
regular_expressions	1
response	1
rna_structure	1
rnp	1
rules	1
scaling	1
segmentation	1
semi_dominance	1
sequence_properties	1
sequencing_error	1
sequencing_technology	1
sex	1
short	1
similarity	1
simulation	1
slightly_deleterious_mutations	1
snp	1
solexa	1
sorting	1
specialization	1
sperm	1
splicing	1
steric_repression	1
strains	1
structural_variation	1
substitution_rate_variation	1
symbiont	1
synteny	1
targets	1
theory	1
threshold	1
timing	1
tissue_specific	1
tissue-specific	1
trait_covariance	1
trait_decomposition	1
tree_topology	1
tribolium	1
virilis	1
weak	1
x_inactivation	1
x_vs_autosomes	1
zygotic	1

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